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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RAB11FIP1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
87.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
72.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
68.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
59.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
55.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
44.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
44.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
42.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
37.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
34.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
29.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
28.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
27.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
26.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
25.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
23.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
20.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
20.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
20.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
20.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
18.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
18.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
17.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
17.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
17.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
16.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
16.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
16.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
16.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
16.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
16.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
16.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
15.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
15.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
15.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
14.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
14.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
14.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
14.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
13.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
13.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
13.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
13.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
13.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
13.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
12.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
12.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
12.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
12.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
12.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
12.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
12.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
12.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
12.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
12.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
12.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
12.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
11.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
11.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
11.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
11.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
11.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
11.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
11.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
11.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
11.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
11.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
10.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
10.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
10.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
9.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
9.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
9.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
9.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
9.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
9.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
9.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
9.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
9.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
9.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
8.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
8.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
8.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
8.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
8.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
8.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
8.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
8.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
8.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
8.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
8.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
7.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
7.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
7.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
7.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
7.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
7.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
7.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
7.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
7.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
7.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
7.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
7.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
7.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
7.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
7.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
6.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
6.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
6.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
6.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
6.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
6.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
6.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
6.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
6.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
6.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
6.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
6.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
6.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
6.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
6.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
6.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
5.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
5.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
5.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
5.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
5.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
5.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
5.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
5.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
5.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
5.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
5.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
5.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
5.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
5.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
5.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
5.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
5.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
5.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
5.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
4.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
4.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
4.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
4.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
4.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
4.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
4.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
4.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
4.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
4.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
4.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
4.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
4.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
4.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
4.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
4.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
4.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
4.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
4.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
4.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
4.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
3.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
3.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
3.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
3.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
3.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
3.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
3.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
3.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
3.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
3.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
3.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
3.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
3.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
3.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
3.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
3.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
3.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
3.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
3.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
3.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
3.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
3.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
3.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
3.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
3.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
3.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
3.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
3.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
3.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
3.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
3.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
3.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
3.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
3.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
3.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
3.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
3.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
3.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
3.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
3.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
3.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
3.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
3.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
3.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
3.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
3.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
3.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
3.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
3.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
2.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
2.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
2.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
2.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
2.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
2.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
2.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
2.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
2.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
2.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
2.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
2.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
2.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
2.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
2.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
2.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
2.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
2.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
2.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
2.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
2.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
2.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
2.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
2.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
2.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
2.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
2.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
2.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
2.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
2.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
2.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
2.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
2.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
2.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
2.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
2.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
2.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
2.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
2.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
2.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
2.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
2.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
2.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
2.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
1.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
1.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
1.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
1.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
1.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
1.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
1.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
1.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
1.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
1.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
1.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
1.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
1.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
1.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
1.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
1.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
1.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
1.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
1.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
1.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
1.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
1.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
1.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
1.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
1.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
1.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
1.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
1.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
1.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
1.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
1.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
1.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
1.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
1.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
1.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
1.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RAB11FIP1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.0
Number of samples
231
Samples
Sample
Description
TPM
DO45211
0 years, male, NA, stage:3, alive, 240 days
89.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
71.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
51.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
35.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
33.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
33.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
33.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
30.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
28.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
27.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
27.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
24.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
23.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
23.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
22.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
22.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
20.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
19.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
19.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
19.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
19.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
18.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
17.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
17.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
16.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
16.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
15.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
15.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
15.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
14.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
14.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
14.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
13.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
12.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
12.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
12.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
11.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
11.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
11.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
11.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
11.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
11.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
11.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
11.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
10.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
10.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
10.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
10.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
10.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
9.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
9.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
9.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
9.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
9.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
9.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
9.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
9.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
8.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
8.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
8.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
8.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
8.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
8.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
8.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
8.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
8.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
8.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
8.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
8.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
7.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
7.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
7.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
7.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
7.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
7.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
7.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
7.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
7.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
7.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
6.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
6.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
6.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
6.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
6.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
6.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
6.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
6.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
6.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
6.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
6.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
6.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
6.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
6.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
6.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
6.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
6.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
6.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
6.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
6.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
6.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
6.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
6.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
6.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
5.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
5.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
5.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
5.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
5.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
5.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
5.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
5.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
5.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
5.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
5.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
5.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
4.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
4.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
4.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
4.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
4.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
4.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
4.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
4.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
4.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
4.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
4.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
4.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
4.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
4.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
4.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
4.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
4.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
3.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
3.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
3.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
3.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
3.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
3.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
3.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
3.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
3.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
3.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
3.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
3.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
3.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
3.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
3.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
3.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
3.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
3.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
3.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
3.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
3.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
3.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
3.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
3.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
3.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
3.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
3.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
3.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
3.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
3.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
3.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
3.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
3.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
3.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
3.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
3.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
3.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
3.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
3.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
3.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
3.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
2.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
2.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
2.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
2.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
2.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
2.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
2.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
2.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
2.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
2.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
2.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
2.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
2.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
2.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
2.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
2.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
2.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
2.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
2.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
2.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
2.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
2.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
2.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
2.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
2.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
2.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
2.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
2.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
2.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
2.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
2.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
2.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
2.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
2.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
2.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
2.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
2.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
2.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
1.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
1.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
1.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
1.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
1.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
1.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
1.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
1.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
1.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
1.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
1.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
1.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
1.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
1.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
1.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
1.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
641
Tumor
1.8
917
Tumor
1.7
921
Tumor
1.7
211
Tumor
1.5
497
Tumor
1.3
881
Tumor
1.2
951
Tumor
1.2
427
Tumor
1.2
413
Tumor
1.1
221
Tumor
1.1
375
Tumor
1.1
663
Tumor
1.0
125
Tumor
1.0
817
Tumor
0.9
271
Tumor
0.9
313
Tumor
0.9
395
Tumor
0.9
385
Tumor
0.9
545
Tumor
0.9
553
Tumor
0.9
493
Tumor
0.8
975
Tumor
0.8
737
Tumor
0.8
697
Tumor
0.8
311
Tumor
0.7
331
Tumor
0.7
745
Tumor
0.7
851
Tumor
0.6
533
Tumor
0.6
527
Tumor
0.6
523
Tumor
0.5
191
Tumor
0.5
1021
Tumor
0.5
957
Tumor
0.5
365
Tumor
0.4
513
Tumor
0.4
141
Tumor
0.4
471
Tumor
0.4
473
Tumor
0.4
425
Tumor
0.4
343
Tumor
0.4
131
Tumor
0.4
123
Tumor
0.4
135
Tumor
0.4
977
Tumor
0.4
147
Tumor
0.4
1027
Tumor
0.4
755
Tumor
0.3
524
Normal
0.3
455
Tumor
0.3
671
Tumor
0.3
937
Tumor
0.3
383
Tumor
0.3
171
Tumor
0.3
213
Tumor
0.3
863
Tumor
0.3
491
Tumor
0.2
823
Tumor
0.2
777
Tumor
0.2
444
Normal
0.2
411
Tumor
0.2
963
Tumor
0.2
478
Normal
0.2
195
Tumor
0.2
217
Tumor
0.2
635
Tumor
0.2
498
Normal
0.2
447
Tumor
0.2
865
Tumor
0.2
536
Normal
0.2
813
Tumor
0.2
351
Tumor
0.2
415
Tumor
0.2
483
Tumor
0.2
268
Normal
0.2
563
Tumor
0.2
814
Normal
0.2
467
Tumor
0.2
355
Tumor
0.2
393
Tumor
0.1
661
Tumor
0.1
743
Tumor
0.1
983
Tumor
0.1
461
Tumor
0.1
283
Tumor
0.1
943
Tumor
0.1
224
Normal
0.1
492
Normal
0.1
724
Normal
0.1
685
Tumor
0.1
785
Tumor
0.1
913
Tumor
0.1
297
Tumor
0.1
463
Tumor
0.1
873
Tumor
0.1
857
Tumor
0.1
538
Normal
0.1
515
Tumor
0.1
277
Tumor
0.1
672
Normal
0.0
916
Normal
0.0
223
Tumor
0.0
435
Tumor
0.0
192
Normal
0.0
567
Tumor
0.0
925
Tumor
0.0
978
Normal
0.0
1031
Tumor
0.0
537
Tumor
0.0
666
Normal
0.0
713
Tumor
0.0
284
Normal
0.0
465
Tumor
0.0
218
Normal
0.0
386
Normal
0.0
423
Tumor
0.0
535
Tumor
0.0
883
Tumor
0.0
525
Tumor
-0.1
662
Normal
-0.1
954
Normal
-0.1
647
Tumor
-0.1
434
Normal
-0.1
477
Tumor
-0.1
966
Normal
-0.1
938
Normal
-0.1
187
Tumor
-0.1
976
Normal
-0.1
451
Tumor
-0.1
286
Normal
-0.1
944
Normal
-0.1
231
Tumor
-0.1
911
Tumor
-0.1
642
Normal
-0.1
861
Tumor
-0.1
364
Normal
-0.1
852
Normal
-0.1
328
Normal
-0.1
361
Tumor
-0.1
396
Normal
-0.1
363
Tumor
-0.1
627
Tumor
-0.1
443
Tumor
-0.2
482
Normal
-0.2
526
Normal
-0.2
956
Normal
-0.2
474
Normal
-0.2
424
Normal
-0.2
955
Tumor
-0.2
664
Normal
-0.2
727
Tumor
-0.2
472
Normal
-0.2
261
Tumor
-0.2
557
Tumor
-0.2
285
Tumor
-0.2
722
Normal
-0.2
884
Normal
-0.2
161
Tumor
-0.2
878
Normal
-0.2
858
Normal
-0.2
431
Tumor
-0.2
384
Normal
-0.2
394
Normal
-0.2
185
Tumor
-0.2
312
Normal
-0.2
262
Normal
-0.2
142
Normal
-0.2
214
Normal
-0.2
112
Tumor
-0.2
124
Normal
-0.2
1013
Tumor
-0.2
392
Normal
-0.2
573
Tumor
-0.2
877
Tumor
-0.2
212
Normal
-0.2
714
Normal
-0.2
721
Tumor
-0.2
298
Normal
-0.2
648
Normal
-0.2
716
Normal
-0.2
494
Normal
-0.2
388
Normal
-0.2
778
Normal
-0.3
391
Tumor
-0.3
636
Normal
-0.3
818
Normal
-0.3
696
Normal
-0.3
228
Normal
-0.3
387
Tumor
-0.3
815
Tumor
-0.3
958
Normal
-0.3
414
Normal
-0.3
462
Normal
-0.3
188
Normal
-0.3
715
Tumor
-0.3
257
Tumor
-0.3
546
Normal
-0.3
786
Normal
-0.3
422
Normal
-0.3
416
Normal
-0.3
145
Tumor
-0.3
222
Normal
-0.3
816
Normal
-0.3
137
Tumor
-0.3
433
Tumor
-0.3
574
Normal
-0.3
953
Tumor
-0.3
882
Normal
-0.3
1016
Normal
-0.3
314
Normal
-0.3
488
Normal
-0.3
1045
Tumor
-0.3
868
Normal
-0.3
126
Normal
-0.3
695
Tumor
-0.3
196
Normal
-0.3
617
Tumor
-0.3
952
Normal
-0.3
332
Normal
-0.3
1014
Normal
-0.3
558
Normal
-0.3
412
Normal
-0.3
428
Normal
-0.3
1015
Tumor
-0.3
267
Tumor
-0.3
484
Normal
-0.3
514
Normal
-0.3
984
Normal
-0.3
138
Normal
-0.3
1028
Normal
-0.3
1044
Normal
-0.3
554
Normal
-0.3
686
Normal
-0.3
1025
Tumor
-0.4
518
Normal
-0.4
874
Normal
-0.4
982
Normal
-0.4
516
Normal
-0.4
914
Normal
-0.4
912
Normal
-0.4
1032
Normal
-0.4
628
Normal
-0.4
481
Tumor
-0.4
421
Tumor
-0.4
926
Normal
-0.4
964
Normal
-0.4
918
Normal
-0.4
866
Normal
-0.4
452
Normal
-0.4
341
Tumor
-0.4
968
Normal
-0.4
922
Normal
-0.4
146
Normal
-0.4
468
Normal
-0.4
756
Normal
-0.4
534
Normal
-0.4
915
Tumor
-0.4
272
Normal
-0.4
1042
Normal
-0.4
113
Tumor
-0.4
665
Tumor
-0.4
1026
Normal
-0.4
728
Normal
-0.4
426
Normal
-0.4
227
Tumor
-0.4
114
Normal
-0.4
1043
Tumor
-0.5
528
Normal
-0.5
965
Tumor
-0.5
362
Normal
-0.5
1041
Tumor
-0.5
568
Normal
-0.5
356
Normal
-0.5
824
Normal
-0.5
864
Normal
-0.5
862
Normal
-0.5
738
Normal
-0.5
278
Normal
-0.5
327
Tumor
-0.5
456
Normal
-0.5
232
Normal
-0.5
698
Normal
-0.5
464
Normal
-0.5
924
Normal
-0.5
366
Normal
-0.5
352
Normal
-0.5
127
Tumor
-0.5
923
Tumor
-0.5
448
Normal
-0.5
741
Tumor
-0.5
618
Normal
-0.5
616
Normal
-0.6
258
Normal
-0.6
162
Normal
-0.6
368
Normal
-0.6
1046
Normal
-0.6
354
Normal
-0.6
723
Tumor
-0.6
1022
Normal
-0.6
132
Normal
-0.6
487
Tumor
-0.6
111
Normal
-0.6
564
Normal
-0.6
172
Normal
-0.6
867
Tumor
-0.6
615
Tumor
-0.6
446
Normal
-0.6
572
Normal
-0.6
367
Tumor
-0.6
148
Normal
-0.6
128
Normal
-0.6
136
Normal
-0.7
344
Normal
-0.7
744
Normal
-0.7
517
Tumor
-0.7
186
Normal
-0.7
742
Normal
-0.7
357
Tumor
-0.7
466
Normal
-0.7
967
Tumor
-0.7
981
Tumor
-0.8
358
Normal
-0.8
432
Normal
-0.8
571
Tumor
-0.8
445
Tumor
-0.8
342
Normal
-0.8
746
Normal
-0.9
353
Tumor
-0.9
376
Normal
-0.9
436
Normal
-1.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
