We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
UQCRB is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
355.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
1116.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
1075.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
1060.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
899.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
847.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
824.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
818.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
804.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
778.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
778.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
720.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
717.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
705.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
699.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
691.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
679.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
656.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
654.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
648.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
644.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
641.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
636.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
635.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
635.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
634.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
633.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
630.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
621.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
619.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
613.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
611.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
605.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
605.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
591.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
585.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
578.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
572.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
572.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
568.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
567.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
566.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
560.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
557.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
556.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
555.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
551.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
550.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
545.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
542.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
539.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
530.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
527.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
523.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
523.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
521.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
519.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
519.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
517.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
515.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
514.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
512.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
512.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
508.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
503.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
502.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
497.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
494.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
493.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
492.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
490.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
487.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
483.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
482.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
477.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
476.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
472.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
472.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
472.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
471.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
470.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
469.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
465.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
464.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
464.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
462.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
462.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
453.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
452.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
450.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
445.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
443.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
443.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
440.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
440.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
439.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
436.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
432.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
431.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
431.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
430.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
429.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
429.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
428.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
427.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
421.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
420.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
419.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
418.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
417.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
417.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
416.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
415.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
412.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
409.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
401.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
401.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
398.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
398.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
397.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
397.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
397.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
392.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
391.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
391.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
390.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
389.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
388.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
387.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
387.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
386.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
386.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
381.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
378.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
373.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
372.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
370.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
368.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
364.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
364.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
363.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
363.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
362.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
359.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
355.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
353.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
352.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
351.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
347.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
347.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
347.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
346.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
345.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
345.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
339.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
339.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
338.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
337.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
336.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
336.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
336.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
334.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
332.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
331.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
331.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
330.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
330.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
329.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
325.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
325.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
325.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
325.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
324.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
321.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
319.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
316.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
316.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
312.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
311.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
310.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
310.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
310.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
310.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
309.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
308.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
308.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
308.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
307.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
306.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
305.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
304.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
304.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
304.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
303.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
302.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
301.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
298.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
298.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
298.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
297.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
296.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
296.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
294.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
293.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
293.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
293.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
292.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
292.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
292.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
289.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
289.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
289.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
289.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
288.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
286.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
286.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
286.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
286.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
285.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
285.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
284.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
283.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
283.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
283.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
282.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
279.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
279.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
275.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
275.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
274.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
273.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
273.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
273.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
271.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
271.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
270.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
269.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
266.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
266.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
265.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
264.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
263.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
262.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
260.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
258.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
258.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
256.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
256.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
255.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
254.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
254.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
253.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
253.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
251.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
251.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
251.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
250.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
249.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
248.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
248.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
245.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
243.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
242.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
242.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
240.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
240.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
238.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
238.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
236.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
235.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
235.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
230.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
230.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
228.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
227.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
227.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
225.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
225.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
225.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
221.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
220.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
219.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
219.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
218.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
218.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
217.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
216.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
215.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
215.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
214.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
213.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
212.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
209.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
209.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
208.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
208.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
207.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
206.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
206.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
206.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
205.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
205.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
205.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
204.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
204.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
204.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
199.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
197.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
197.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
197.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
196.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
196.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
195.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
194.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
194.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
194.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
194.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
193.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
193.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
192.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
191.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
190.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
186.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
186.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
185.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
184.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
183.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
182.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
182.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
180.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
178.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
177.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
177.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
176.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
175.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
173.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
171.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
167.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
157.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
156.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
156.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
154.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
153.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
152.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
148.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
145.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
145.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
144.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
144.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
142.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
142.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
141.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
140.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
140.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
132.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
131.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
129.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
128.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
126.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
121.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
120.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
119.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
UQCRB is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
56.8
Number of samples
231
Samples
Sample
Description
TPM
DO48672
0 years, male, NA, stage:2, alive, 450 days
210.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
163.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
159.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
155.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
150.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
147.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
144.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
144.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
137.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
134.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
125.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
123.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
123.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
123.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
117.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
117.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
116.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
115.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
112.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
111.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
109.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
109.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
107.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
107.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
105.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
105.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
104.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
102.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
102.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
98.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
96.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
96.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
94.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
92.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
92.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
87.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
87.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
83.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
83.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
82.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
81.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
80.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
79.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
78.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
78.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
76.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
75.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
74.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
72.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
72.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
71.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
71.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
68.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
68.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
66.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
64.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
64.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
64.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
64.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
64.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
63.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
62.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
62.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
61.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
61.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
60.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
60.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
60.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
59.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
59.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
58.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
58.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
57.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
57.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
57.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
57.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
57.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
56.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
56.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
55.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
55.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
54.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
54.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
53.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
53.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
53.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
52.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
52.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
52.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
52.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
52.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
52.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
51.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
51.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
51.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
50.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
50.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
50.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
49.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
49.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
49.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
49.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
49.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
48.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
48.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
48.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
48.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
48.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
48.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
48.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
47.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
47.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
47.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
47.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
47.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
47.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
47.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
46.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
46.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
46.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
46.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
46.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
45.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
45.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
45.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
44.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
44.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
43.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
43.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
43.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
43.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
43.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
42.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
42.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
42.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
41.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
41.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
41.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
41.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
41.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
41.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
41.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
41.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
41.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
41.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
41.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
41.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
41.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
40.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
40.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
40.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
40.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
40.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
39.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
39.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
39.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
39.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
39.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
38.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
38.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
38.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
38.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
38.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
37.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
37.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
37.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
36.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
36.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
36.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
36.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
36.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
36.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
36.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
35.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
35.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
35.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
34.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
34.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
34.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
34.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
34.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
33.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
33.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
33.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
33.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
32.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
32.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
32.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
32.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
31.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
31.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
31.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
31.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
31.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
30.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
30.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
30.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
30.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
30.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
30.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
30.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
30.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
29.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
28.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
28.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
28.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
28.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
28.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
28.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
27.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
27.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
27.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
27.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
26.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
26.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
26.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
26.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
25.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
25.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
24.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
24.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
24.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
23.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
23.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
23.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
23.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
23.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
21.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
20.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
20.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
15.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
231
Tumor
1.2
627
Tumor
1.2
227
Tumor
1.1
571
Tumor
0.9
745
Tumor
0.9
915
Tumor
0.9
557
Tumor
0.8
487
Tumor
0.8
423
Tumor
0.8
867
Tumor
0.8
411
Tumor
0.7
1041
Tumor
0.7
636
Normal
0.6
911
Tumor
0.6
922
Normal
0.6
327
Tumor
0.5
912
Normal
0.5
145
Tumor
0.5
713
Tumor
0.5
537
Tumor
0.5
698
Normal
0.5
466
Normal
0.5
685
Tumor
0.5
356
Normal
0.5
616
Normal
0.5
267
Tumor
0.5
172
Normal
0.5
944
Normal
0.5
171
Tumor
0.4
435
Tumor
0.4
878
Normal
0.4
341
Tumor
0.4
1043
Tumor
0.4
376
Normal
0.4
686
Normal
0.4
462
Normal
0.4
448
Normal
0.4
981
Tumor
0.4
755
Tumor
0.4
862
Normal
0.4
451
Tumor
0.4
882
Normal
0.4
554
Normal
0.4
491
Tumor
0.4
483
Tumor
0.4
488
Normal
0.4
546
Normal
0.4
534
Normal
0.4
648
Normal
0.3
128
Normal
0.3
564
Normal
0.3
954
Normal
0.3
344
Normal
0.3
695
Tumor
0.3
232
Normal
0.3
342
Normal
0.3
924
Normal
0.3
572
Normal
0.3
1045
Tumor
0.3
278
Normal
0.3
162
Normal
0.3
864
Normal
0.3
615
Tumor
0.3
824
Normal
0.3
484
Normal
0.3
298
Normal
0.3
1013
Tumor
0.3
756
Normal
0.3
642
Normal
0.3
746
Normal
0.3
918
Normal
0.3
818
Normal
0.3
722
Normal
0.3
328
Normal
0.3
436
Normal
0.3
955
Tumor
0.3
416
Normal
0.3
786
Normal
0.3
866
Normal
0.3
723
Tumor
0.3
868
Normal
0.3
114
Normal
0.3
858
Normal
0.3
214
Normal
0.3
314
Normal
0.3
635
Tumor
0.3
332
Normal
0.3
1032
Normal
0.3
196
Normal
0.2
714
Normal
0.2
525
Tumor
0.2
465
Tumor
0.2
468
Normal
0.2
528
Normal
0.2
426
Normal
0.2
452
Normal
0.2
473
Tumor
0.2
558
Normal
0.2
568
Normal
0.2
663
Tumor
0.2
1046
Normal
0.2
1014
Normal
0.2
228
Normal
0.2
513
Tumor
0.2
148
Normal
0.2
925
Tumor
0.2
394
Normal
0.2
916
Normal
0.2
984
Normal
0.2
938
Normal
0.2
618
Normal
0.2
926
Normal
0.2
132
Normal
0.2
982
Normal
0.2
431
Tumor
0.2
392
Normal
0.2
958
Normal
0.2
721
Tumor
0.2
112
Tumor
0.2
728
Normal
0.2
138
Normal
0.2
161
Tumor
0.2
113
Tumor
0.2
142
Normal
0.2
1022
Normal
0.2
414
Normal
0.2
358
Normal
0.2
1025
Tumor
0.2
696
Normal
0.2
628
Normal
0.2
482
Normal
0.2
738
Normal
0.2
873
Tumor
0.2
964
Normal
0.2
195
Tumor
0.2
514
Normal
0.2
258
Normal
0.2
481
Tumor
0.1
472
Normal
0.1
874
Normal
0.1
364
Normal
0.1
1015
Tumor
0.1
641
Tumor
0.1
861
Tumor
0.1
852
Normal
0.1
742
Normal
0.1
957
Tumor
0.1
388
Normal
0.1
1028
Normal
0.1
111
Normal
0.1
664
Normal
0.1
212
Normal
0.1
1026
Normal
0.1
433
Tumor
0.1
422
Normal
0.1
186
Normal
0.1
518
Normal
0.1
446
Normal
0.1
516
Normal
0.1
816
Normal
0.1
1044
Normal
0.1
223
Tumor
0.1
432
Normal
0.1
716
Normal
0.1
368
Normal
0.1
424
Normal
0.1
124
Normal
0.1
937
Tumor
0.1
538
Normal
0.1
914
Normal
0.1
428
Normal
0.1
354
Normal
0.1
313
Tumor
0.1
272
Normal
0.1
952
Normal
0.1
494
Normal
0.1
778
Normal
0.1
524
Normal
0.1
136
Normal
0.1
361
Tumor
0.1
262
Normal
0.1
352
Normal
0.1
865
Tumor
0.0
1042
Normal
0.0
978
Normal
0.0
923
Tumor
0.0
913
Tumor
0.0
662
Normal
0.0
257
Tumor
0.0
221
Tumor
0.0
526
Normal
0.0
464
Normal
0.0
1016
Normal
0.0
126
Normal
0.0
284
Normal
0.0
666
Normal
0.0
573
Tumor
0.0
366
Normal
0.0
218
Normal
0.0
474
Normal
0.0
744
Normal
0.0
976
Normal
0.0
261
Tumor
0.0
123
Tumor
0.0
224
Normal
0.0
127
Tumor
0.0
353
Tumor
0.0
396
Normal
0.0
672
Normal
0.0
286
Normal
0.0
222
Normal
0.0
191
Tumor
0.0
146
Normal
0.0
968
Normal
0.0
312
Normal
0.0
953
Tumor
0.0
188
Normal
0.0
434
Normal
0.0
741
Tumor
-0.1
492
Normal
-0.1
884
Normal
-0.1
135
Tumor
-0.1
268
Normal
-0.1
456
Normal
-0.1
966
Normal
-0.1
187
Tumor
-0.1
384
Normal
-0.1
415
Tumor
-0.1
617
Tumor
-0.1
956
Normal
-0.1
498
Normal
-0.1
553
Tumor
-0.1
386
Normal
-0.1
497
Tumor
-0.1
517
Tumor
-0.1
727
Tumor
-0.1
185
Tumor
-0.1
393
Tumor
-0.1
665
Tumor
-0.1
478
Normal
-0.1
963
Tumor
-0.2
574
Normal
-0.2
387
Tumor
-0.2
863
Tumor
-0.2
444
Normal
-0.2
563
Tumor
-0.2
427
Tumor
-0.2
365
Tumor
-0.2
277
Tumor
-0.2
461
Tumor
-0.2
477
Tumor
-0.2
363
Tumor
-0.2
785
Tumor
-0.2
493
Tumor
-0.2
857
Tumor
-0.2
777
Tumor
-0.2
147
Tumor
-0.2
1021
Tumor
-0.2
213
Tumor
-0.2
355
Tumor
-0.3
715
Tumor
-0.3
533
Tumor
-0.3
412
Normal
-0.3
141
Tumor
-0.3
743
Tumor
-0.3
467
Tumor
-0.3
395
Tumor
-0.3
1031
Tumor
-0.3
536
Normal
-0.3
413
Tumor
-0.3
977
Tumor
-0.3
523
Tumor
-0.4
271
Tumor
-0.4
217
Tumor
-0.4
965
Tumor
-0.4
697
Tumor
-0.4
367
Tumor
-0.4
362
Normal
-0.4
192
Normal
-0.4
443
Tumor
-0.4
357
Tumor
-0.4
823
Tumor
-0.4
471
Tumor
-0.4
567
Tumor
-0.4
445
Tumor
-0.5
647
Tumor
-0.5
137
Tumor
-0.5
1027
Tumor
-0.5
943
Tumor
-0.5
883
Tumor
-0.5
951
Tumor
-0.5
881
Tumor
-0.5
515
Tumor
-0.5
383
Tumor
-0.5
921
Tumor
-0.5
447
Tumor
-0.6
851
Tumor
-0.6
297
Tumor
-0.6
813
Tumor
-0.6
975
Tumor
-0.6
421
Tumor
-0.6
877
Tumor
-0.6
814
Normal
-0.6
463
Tumor
-0.7
917
Tumor
-0.7
331
Tumor
-0.7
125
Tumor
-0.7
983
Tumor
-0.7
815
Tumor
-0.7
343
Tumor
-0.7
211
Tumor
-0.7
817
Tumor
-0.7
351
Tumor
-0.8
375
Tumor
-0.8
737
Tumor
-0.8
967
Tumor
-0.8
527
Tumor
-0.8
671
Tumor
-0.8
425
Tumor
-0.9
385
Tumor
-0.9
724
Normal
-0.9
285
Tumor
-0.9
455
Tumor
-0.9
311
Tumor
-1.0
535
Tumor
-1.1
391
Tumor
-1.1
131
Tumor
-1.1
545
Tumor
-1.1
283
Tumor
-1.2
661
Tumor
-1.2
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.