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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SCAF4 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
20.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
20.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
20.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
18.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
16.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
16.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
16.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
14.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
14.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
14.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
14.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
13.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
13.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
13.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
13.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
13.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
13.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
13.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
12.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
12.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
12.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
12.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
12.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
11.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
11.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
11.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
11.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
11.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
11.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
11.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
11.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
11.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
10.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
10.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
10.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
10.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
10.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
10.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
10.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
10.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
10.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
10.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
10.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
10.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
10.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
10.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
10.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
10.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
10.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
10.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
10.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
10.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
10.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
9.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
9.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
9.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
9.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
9.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
9.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
9.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
9.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
9.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
9.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
9.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
9.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
9.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
9.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
9.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
9.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
9.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
9.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
9.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
9.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
9.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
8.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
8.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
8.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
8.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
8.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
8.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
8.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
8.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
8.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
8.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
8.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
8.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
8.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
8.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
8.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
8.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
8.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
8.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
8.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
8.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
8.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
8.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
8.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
8.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
8.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
8.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
8.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
8.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
8.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
8.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
8.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
8.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
8.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
7.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
7.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
7.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
7.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
7.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
7.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
7.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
7.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
7.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
7.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
7.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
7.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
7.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
7.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
7.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
7.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
7.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
7.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
7.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
7.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
7.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
7.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
7.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
7.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
7.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
7.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
7.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
7.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
7.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
7.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
7.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
7.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
7.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
6.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
6.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
6.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
6.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
6.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
6.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
6.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
6.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
6.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
6.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
6.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
6.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
6.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
6.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
6.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
6.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
6.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
6.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
6.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
6.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
6.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
6.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
6.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
6.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
6.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
6.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
6.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
6.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
6.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
6.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
6.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
6.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
6.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
6.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
6.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
6.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
6.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
6.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
6.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
5.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
5.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
5.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
5.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
5.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
5.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
5.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
5.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
5.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
5.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
5.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
5.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
5.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
5.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
5.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
5.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
5.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
5.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
5.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
5.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
5.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
5.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
5.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
5.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
5.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
5.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
5.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
5.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
5.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
5.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
5.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
5.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
5.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
5.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
5.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
5.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
5.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
5.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
5.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
5.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
5.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
5.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
4.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
4.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
4.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
4.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
4.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
4.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
4.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
4.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
4.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
4.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
4.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
4.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
4.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
4.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
4.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
4.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
4.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
4.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
4.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
4.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
4.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
4.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
4.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
4.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
4.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
4.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
4.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
4.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
3.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
3.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
3.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
3.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
3.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
3.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
3.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
3.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
3.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
2.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
2.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
2.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
2.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SCAF4 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.1
Number of samples
231
Samples
Sample
Description
TPM
DO45299
0 years, female, NA, stage:1, alive, 1440 days
21.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
18.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
16.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
16.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
14.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
14.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
14.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
14.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
13.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
13.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
13.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
13.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
13.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
12.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
12.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
12.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
12.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
12.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
12.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
12.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
12.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
12.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
12.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
12.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
12.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
12.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
12.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
12.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
11.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
11.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
11.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
11.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
11.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
11.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
11.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
11.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
11.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
11.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
11.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
10.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
10.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
10.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
10.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
10.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
10.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
10.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
10.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
10.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
10.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
10.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
10.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
10.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
10.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
10.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
10.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
10.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
10.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
9.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
9.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
9.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
9.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
9.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
9.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
9.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
9.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
9.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
9.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
9.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
9.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
9.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
9.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
9.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
9.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
9.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
9.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
9.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
9.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
9.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
9.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
9.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
8.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
8.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
8.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
8.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
8.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
8.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
8.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
8.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
8.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
8.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
8.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
8.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
8.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
8.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
8.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
8.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
8.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
8.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
8.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
8.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
8.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
8.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
8.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
8.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
8.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
8.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
7.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
7.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
7.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
7.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
7.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
7.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
7.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
7.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
7.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
7.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
7.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
7.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
7.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
7.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
7.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
7.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
7.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
7.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
7.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
7.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
7.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
7.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
7.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
7.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
7.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
7.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
7.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
7.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
7.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
7.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
7.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
7.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
7.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
7.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
6.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
6.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
6.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
6.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
6.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
6.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
6.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
6.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
6.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
6.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
6.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
6.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
6.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
6.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
6.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
6.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
6.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
6.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
6.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
6.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
6.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
6.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
6.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
6.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
6.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
6.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
6.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
6.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
5.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
5.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
5.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
5.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
5.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
5.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
5.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
5.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
5.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
5.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
5.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
5.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
5.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
5.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
5.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
5.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
5.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
5.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
5.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
5.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
5.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
5.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
5.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
5.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
5.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
5.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
5.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
5.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
5.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
5.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
5.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
5.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
5.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
4.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
4.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
4.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
4.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
4.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
4.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
4.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
4.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
4.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
4.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
4.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
3.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
3.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
3.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
3.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
3.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
3.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
3.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
3.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
2.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
2.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
2.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
743
Tumor
1.1
131
Tumor
1.0
277
Tumor
0.8
695
Tumor
0.8
425
Tumor
0.8
517
Tumor
0.7
921
Tumor
0.7
865
Tumor
0.7
357
Tumor
0.7
965
Tumor
0.7
341
Tumor
0.6
977
Tumor
0.6
737
Tumor
0.6
957
Tumor
0.6
271
Tumor
0.6
533
Tumor
0.6
463
Tumor
0.6
881
Tumor
0.5
331
Tumor
0.5
411
Tumor
0.5
445
Tumor
0.5
815
Tumor
0.5
983
Tumor
0.5
641
Tumor
0.5
951
Tumor
0.5
413
Tumor
0.5
523
Tumor
0.5
975
Tumor
0.5
953
Tumor
0.5
817
Tumor
0.5
393
Tumor
0.5
1021
Tumor
0.4
1031
Tumor
0.4
1013
Tumor
0.4
1025
Tumor
0.4
355
Tumor
0.4
351
Tumor
0.4
923
Tumor
0.4
727
Tumor
0.4
443
Tumor
0.4
431
Tumor
0.4
515
Tumor
0.4
227
Tumor
0.4
427
Tumor
0.4
285
Tumor
0.4
647
Tumor
0.4
473
Tumor
0.4
567
Tumor
0.3
395
Tumor
0.3
493
Tumor
0.3
471
Tumor
0.3
1043
Tumor
0.3
435
Tumor
0.3
867
Tumor
0.3
221
Tumor
0.3
671
Tumor
0.3
1045
Tumor
0.3
661
Tumor
0.3
513
Tumor
0.3
571
Tumor
0.3
477
Tumor
0.3
877
Tumor
0.3
483
Tumor
0.2
123
Tumor
0.2
161
Tumor
0.2
553
Tumor
0.2
813
Tumor
0.2
497
Tumor
0.2
363
Tumor
0.2
814
Normal
0.2
527
Tumor
0.2
211
Tumor
0.2
147
Tumor
0.2
917
Tumor
0.2
861
Tumor
0.2
465
Tumor
0.2
715
Tumor
0.2
311
Tumor
0.2
487
Tumor
0.2
112
Tumor
0.2
433
Tumor
0.2
498
Normal
0.2
537
Tumor
0.2
873
Tumor
0.2
525
Tumor
0.2
1041
Tumor
0.2
756
Normal
0.2
943
Tumor
0.2
883
Tumor
0.1
492
Normal
0.1
365
Tumor
0.1
534
Normal
0.1
884
Normal
0.1
524
Normal
0.1
1032
Normal
0.1
192
Normal
0.1
516
Normal
0.1
421
Tumor
0.1
915
Tumor
0.1
447
Tumor
0.1
451
Tumor
0.1
724
Normal
0.1
785
Tumor
0.1
481
Tumor
0.1
297
Tumor
0.1
858
Normal
0.1
778
Normal
0.1
744
Normal
0.1
741
Tumor
0.1
1046
Normal
0.1
484
Normal
0.1
444
Normal
0.1
1042
Normal
0.1
171
Tumor
0.1
367
Tumor
0.1
663
Tumor
0.1
563
Tumor
0.1
546
Normal
0.1
697
Tumor
0.1
488
Normal
0.1
518
Normal
0.1
698
Normal
0.1
385
Tumor
0.1
918
Normal
0.1
384
Normal
0.1
954
Normal
0.1
141
Tumor
0.1
528
Normal
0.1
721
Tumor
0.1
866
Normal
0.0
882
Normal
0.0
635
Tumor
0.0
538
Normal
0.0
536
Normal
0.0
327
Tumor
0.0
863
Tumor
0.0
343
Tumor
0.0
874
Normal
0.0
912
Normal
0.0
786
Normal
0.0
617
Tumor
0.0
284
Normal
0.0
878
Normal
0.0
434
Normal
0.0
728
Normal
0.0
554
Normal
0.0
416
Normal
0.0
937
Tumor
0.0
714
Normal
0.0
391
Tumor
0.0
824
Normal
0.0
662
Normal
0.0
615
Tumor
0.0
955
Tumor
0.0
922
Normal
0.0
286
Normal
0.0
864
Normal
0.0
213
Tumor
0.0
268
Normal
0.0
353
Tumor
0.0
666
Normal
0.0
1014
Normal
0.0
267
Tumor
0.0
545
Tumor
0.0
366
Normal
0.0
146
Normal
0.0
298
Normal
0.0
746
Normal
0.0
984
Normal
0.0
664
Normal
0.0
777
Tumor
0.0
1026
Normal
0.0
364
Normal
0.0
375
Tumor
0.0
696
Normal
0.0
362
Normal
0.0
648
Normal
0.0
926
Normal
0.0
195
Tumor
0.0
564
Normal
0.0
448
Normal
0.0
387
Tumor
0.0
328
Normal
0.0
137
Tumor
0.0
823
Tumor
0.0
125
Tumor
0.0
911
Tumor
0.0
713
Tumor
0.0
914
Normal
0.0
686
Normal
0.0
716
Normal
0.0
462
Normal
0.0
113
Tumor
0.0
816
Normal
0.0
685
Tumor
0.0
467
Tumor
0.0
455
Tumor
0.0
461
Tumor
0.0
258
Normal
-0.1
217
Tumor
-0.1
956
Normal
-0.1
283
Tumor
-0.1
978
Normal
-0.1
494
Normal
-0.1
352
Normal
-0.1
514
Normal
-0.1
482
Normal
-0.1
376
Normal
-0.1
1027
Tumor
-0.1
818
Normal
-0.1
672
Normal
-0.1
982
Normal
-0.1
464
Normal
-0.1
924
Normal
-0.1
342
Normal
-0.1
474
Normal
-0.1
135
Tumor
-0.1
446
Normal
-0.1
212
Normal
-0.1
742
Normal
-0.1
966
Normal
-0.1
1028
Normal
-0.1
356
Normal
-0.1
1044
Normal
-0.1
368
Normal
-0.1
436
Normal
-0.1
938
Normal
-0.1
361
Tumor
-0.1
574
Normal
-0.1
472
Normal
-0.1
231
Tumor
-0.1
862
Normal
-0.1
952
Normal
-0.1
456
Normal
-0.1
1022
Normal
-0.1
312
Normal
-0.1
526
Normal
-0.1
852
Normal
-0.1
976
Normal
-0.1
224
Normal
-0.1
142
Normal
-0.1
478
Normal
-0.1
968
Normal
-0.1
627
Tumor
-0.1
396
Normal
-0.1
261
Tumor
-0.1
257
Tumor
-0.1
868
Normal
-0.1
452
Normal
-0.1
228
Normal
-0.1
916
Normal
-0.1
383
Tumor
-0.1
358
Normal
-0.1
386
Normal
-0.1
1016
Normal
-0.1
944
Normal
-0.1
755
Tumor
-0.1
572
Normal
-0.1
344
Normal
-0.1
722
Normal
-0.1
423
Tumor
-0.1
468
Normal
-0.1
967
Tumor
-0.1
138
Normal
-0.1
738
Normal
-0.1
132
Normal
-0.1
262
Normal
-0.2
568
Normal
-0.2
981
Tumor
-0.2
723
Tumor
-0.2
354
Normal
-0.2
964
Normal
-0.2
628
Normal
-0.2
412
Normal
-0.2
426
Normal
-0.2
851
Tumor
-0.2
114
Normal
-0.2
636
Normal
-0.2
185
Tumor
-0.2
415
Tumor
-0.2
642
Normal
-0.2
232
Normal
-0.2
272
Normal
-0.2
466
Normal
-0.2
392
Normal
-0.2
857
Tumor
-0.2
432
Normal
-0.2
388
Normal
-0.2
573
Tumor
-0.2
126
Normal
-0.2
136
Normal
-0.2
124
Normal
-0.2
618
Normal
-0.2
963
Tumor
-0.2
186
Normal
-0.2
188
Normal
-0.2
332
Normal
-0.2
958
Normal
-0.2
223
Tumor
-0.2
394
Normal
-0.2
196
Normal
-0.2
925
Tumor
-0.2
491
Tumor
-0.2
222
Normal
-0.2
214
Normal
-0.2
1015
Tumor
-0.2
278
Normal
-0.2
314
Normal
-0.2
557
Tumor
-0.3
558
Normal
-0.3
187
Tumor
-0.3
148
Normal
-0.3
665
Tumor
-0.3
162
Normal
-0.3
913
Tumor
-0.3
145
Tumor
-0.3
745
Tumor
-0.3
218
Normal
-0.3
313
Tumor
-0.3
414
Normal
-0.3
191
Tumor
-0.3
422
Normal
-0.3
535
Tumor
-0.3
111
Normal
-0.3
424
Normal
-0.3
172
Normal
-0.3
616
Normal
-0.3
428
Normal
-0.4
128
Normal
-0.4
127
Tumor
-0.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
