MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:19.8 nTPM
HPA Brain:43.2 nTPM
GTEx:19.8 nTPM
FANTOM5:82.2 Scaled Tags Per Million
Pig:97.9 nTPM
Mouse:80.6 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 43.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 36.9
1870 Female, age 42, unknown 48.2
1830 Male, age 51, unknown 46.4
1833 Male, age 53, unknown 45.1
2411 Female, age 72, unknown 42.1
2019 Male, age 18, unknown 37.2
1827 Male, age 72, unknown 34.6
2828 Female, age 72, unknown 32.0
2666 Male, age 74, left hemisphere 29.6
2219 Male, age 76, both hemispheres 27.6
2586 Male, age 75, left hemisphere 26.5
Dorsal raphe nucleus
nTPM: 41.1
2750 Male, age 76, both hemispheres 45.2
2016 Female, age 72, unknown 44.3
2298 Female, age 72, unknown 40.4
1828 Male, age 53, unknown 39.7
2047 Male, age 72, unknown 35.8
Inferior colliculus
nTPM: 36.9
2097 Female, age 72, unknown 41.1
1890 Male, age 53, unknown 35.9
1848 Female, age 42, unknown 35.7
2849 Male, age 72, unknown 34.9
Median raphe nucleus
nTPM: 33.2
2220 Male, age 76, midline 33.2
Periaquaductal grey, anterior
nTPM: 33.2
1947 Male, age 18, unknown 35.7
2502 Female, age 75, unknown 33.8
1795 Male, age 51, unknown 30.0
Periaquaductal grey, dorsal
nTPM: 39.5
2850 Male, age 76, both hemispheres 47.0
1831 Male, age 72, unknown 39.5
2464 Female, age 72, unknown 37.3
1840 Male, age 53, unknown 34.4
Periaquaductal grey, lateral
nTPM: 39.7
2140 Male, age 76, both hemispheres 42.0
2272 Male, age 74, both hemispheres 38.6
2053 Male, age 18, unknown 38.5
Pretectal area
nTPM: 34.7
2273 Male, age 74, both hemispheres 41.6
2316 Male, age 76, right hemisphere 41.2
2825 Male, age 18, unknown 39.9
2667 Female, age 75, unknown 38.4
2224 Female, age 72, unknown 36.9
1815 Male, age 53, unknown 35.8
1817 Female, age 42, unknown 31.3
2407 Male, age 75, both hemispheres 31.1
2007 Male, age 72, unknown 30.3
1944 Female, age 72, unknown 29.3
1816 Male, age 51, unknown 25.6
Red nucleus
nTPM: 43.2
1821 Female, age 72, unknown 51.8
2823 Male, age 76, right hemisphere 51.8
1904 Male, age 53, unknown 50.9
1954 Female, age 42, unknown 50.2
1865 Male, age 51, unknown 49.4
2227 Male, age 72, unknown 44.0
2769 Male, age 72, unknown 43.8
2503 Female, age 72, unknown 42.3
2785 Male, age 18, unknown 38.7
2725 Female, age 75, unknown 36.5
2588 Male, age 74, left hemisphere 30.6
2584 Male, age 75, left hemisphere 28.8
Substantia nigra
nTPM: 37.9
2409 Female, age 72, unknown 48.9
2241 Male, age 72, unknown 43.3
2699 Male, age 18, unknown 39.4
2590 Female, age 75, unknown 38.8
1851 Male, age 51, unknown 37.7
1889 Female, age 72, unknown 36.3
2583 Male, age 75, right hemisphere 35.1
1916 Female, age 42, unknown 33.8
2665 Male, age 74, both hemispheres 33.2
1941 Male, age 53, unknown 32.3
Superior colliculus
nTPM: 36.8
1913 Female, age 42, unknown 46.8
1995 Male, age 72, unknown 41.9
2587 Male, age 74, left hemisphere 41.8
1839 Male, age 51, unknown 40.6
1895 Male, age 76, right hemisphere 39.4
2668 Female, age 75, unknown 35.8
2087 Female, age 72, unknown 33.2
1796 Male, age 53, unknown 32.0
2261 Male, age 18, unknown 30.3
2664 Male, age 75, both hemispheres 26.3
Ventral tegmental area
nTPM: 37.1
2410 Female, age 72, unknown 41.9
2223 Female, age 72, unknown 41.2
2021 Male, age 53, unknown 37.8
2218 Male, age 76, both hemispheres 36.5
1915 Female, age 42, unknown 32.7
1942 Male, age 51, unknown 32.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 19.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 19.8
Samples: 139

Max nTPM: 37.2
Min nTPM: 7.2
Std nTPM: 6.1
Median nTPM: 19.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 37.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 34.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 32.9
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 32.8
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 32.5
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 30.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 30.8
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 29.6
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 29.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 29.5
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 29.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 82.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 82.2
FF:10158-103A5 76 years, female 82.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 97.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 81.3
Samples: 4

Max nTPM: 98.2
Min nTPM: 69.5
Sample A Female 98.2
Sample B Female 71.4
Sample C Male 85.9
Sample D Male 69.5
Midbrain
nTPM: 87.3
Samples: 4

Max nTPM: 103.8
Min nTPM: 74.2
Sample A Female 87.8
Sample B Female 83.4
Sample C Male 103.8
Sample D Male 74.2
Periaqueductal gray
nTPM: 73.7
Samples: 3

Max nTPM: 80.1
Min nTPM: 68.4
Sample B Female 68.4
Sample C Male 80.1
Sample D Male 72.7
Superior colliculi
nTPM: 97.9
Samples: 4

Max nTPM: 119.1
Min nTPM: 86.1
Sample A Female 92.1
Sample B Female 86.1
Sample C Male 119.1
Sample D Male 94.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 80.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 80.6
Samples: 4

Max nTPM: 85.9
Min nTPM: 77.5
Sample A Male 78.6
Sample B Male 77.5
Sample C Female 80.2
Sample D Female 85.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
69549176 Antisense, RP_050118_02_H05, Mouse strain C57BL/6J (56 days, male) 0.0

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