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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
194.9
nTPM
FANTOM5:
301.1
Scaled Tags Per Million
Pig:
104.7
nTPM
Allen mouse:
10.9
Expression energy
PONS - Annotated protein expression
Pending normal tissue analysis
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
194.9
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 104.9
2188
Female, age 91, both hemispheres
128.9
1984
Male, age 76, both hemispheres
104.4
2301
Female, age 85, both hemispheres
100.5
2090
Male, age 80, both hemispheres
85.7
Dorsal cochlear nucleus nTPM: 82.6
2802
Male, age 74, right hemisphere
104.6
2187
Female, age 91, both hemispheres
95.4
2378
Male, age 80, both hemispheres
87.1
2058
Male, age 76, both hemispheres
65.1
2370
Male, age 61, both hemispheres
60.7
Dorsal tegmental nucleus nTPM: 77.4
2326
Male, age 74, both hemispheres
93.4
2083
Male, age 80, both hemispheres
85.4
1936
Male, age 76, left hemisphere
72.4
2358
Male, age 61, both hemispheres
58.4
Dorsolateral tegmental area nTPM: 64.2
2654
Male, age 80, both hemispheres
82.7
2751
Female, age 85, both hemispheres
78.2
2360
Male, age 74, both hemispheres
62.5
2337
Male, age 61, both hemispheres
55.6
2141
Male, age 76, both hemispheres
41.9
Kolliker-Fuse nucleus nTPM: 96.2
2793
Female, age 91, left hemisphere
154.4
2163
Male, age 80, both hemispheres
71.7
2315
Male, age 76, right hemisphere
62.7
Lateral lemniscal nuclei nTPM: 172.6
2169
Male, age 76, both hemispheres
221.7
2036
Male, age 80, both hemispheres
177.7
2453
Male, age 74, right hemisphere
166.5
2320
Female, age 91, left hemisphere
151.4
2746
Female, age 85, left hemisphere
145.9
Lateral parabrachial nucleus nTPM: 109.3
2139
Female, age 85, right hemisphere
154.1
2013
Male, age 80, both hemispheres
115.5
2790
Male, age 61, both hemispheres
84.0
2792
Male, age 76, both hemispheres
83.6
Lateral vestibular nucleus nTPM: 67.5
2311
Male, age 80, both hemispheres
67.8
2184
Male, age 76, both hemispheres
67.2
Locus coeruleus nTPM: 55.5
2720
Male, age 74, both hemispheres
79.2
2162
Male, age 80, both hemispheres
58.2
2123
Female, age 91, both hemispheres
57.7
2788
Male, age 74, unknown
54.4
2317
Female, age 72, unknown
49.4
2014
Male, age 55, unknown
49.3
1980
Male, age 76, both hemispheres
40.0
Medial parabrachial nucleus nTPM: 73.2
2854
Male, age 80, both hemispheres
103.3
2170
Female, age 91, both hemispheres
84.8
2156
Male, age 61, both hemispheres
68.2
2463
Female, age 85, right hemisphere
63.7
2786
Male, age 76, both hemispheres
45.7
Medial periolivary nuclei nTPM: 165.6
2063
Male, age 76, both hemispheres
226.5
2171
Female, age 85, both hemispheres
226.0
2791
Male, age 74, right hemisphere
142.6
2458
Female, age 91, both hemispheres
129.5
2081
Male, age 80, both hemispheres
103.4
Motor facial nucleus nTPM: 155.9
2062
Male, age 76, both hemispheres
231.7
2365
Male, age 74, right hemisphere
170.5
2697
Female, age 85, both hemispheres
160.7
2327
Male, age 80, both hemispheres
143.7
2795
Female, age 91, both hemispheres
140.9
2126
Male, age 61, both hemispheres
88.1
Motor trigeminal nucleus nTPM: 101.9
2560
Male, age 74, both hemispheres
141.9
2079
Male, age 80, both hemispheres
134.5
2321
Female, age 91, both hemispheres
109.4
2335
Male, age 61, both hemispheres
63.2
2309
Male, age 76, both hemispheres
60.3
Nuclei of the trapezoid body nTPM: 194.9
2159
Male, age 61, both hemispheres
280.9
1983
Male, age 76, both hemispheres
207.4
2735
Female, age 85, both hemispheres
206.0
2368
Female, age 91, both hemispheres
146.3
2166
Male, age 80, both hemispheres
133.7
Nucleus raphe magnus nTPM: 188.5
2160
Male, age 61, both hemispheres
253.5
2172
Female, age 85, both hemispheres
223.1
2051
Male, age 76, both hemispheres
177.3
2455
Male, age 74, both hemispheres
171.1
2459
Female, age 91, both hemispheres
155.0
2328
Male, age 80, both hemispheres
151.1
Paramedian reticular nucleus nTPM: 108.6
2050
Female, age 85, both hemispheres
198.4
2057
Male, age 80, both hemispheres
85.8
2052
Male, age 76, both hemispheres
80.2
2313
Male, age 61, both hemispheres
70.0
Pedunculopontine tegmental nucleus nTPM: 74.3
2338
Male, age 61, both hemispheres
88.6
1921
Female, age 85, both hemispheres
67.5
2334
Male, age 80, both hemispheres
66.6
Pontine nuclei nTPM: 187.9
1863
Male, age 55, unknown
251.1
2727
Male, age 61, right hemisphere
240.2
2787
Female, age 85, both hemispheres
197.6
1968
Male, age 76, left hemisphere
196.5
2109
Female, age 72, unknown
189.9
2454
Male, age 74, left hemisphere
187.7
2319
Female, age 91, both hemispheres
133.4
2115
Male, age 80, left hemisphere
106.8
Pontine raphe nucleus nTPM: 101.6
2122
Female, age 85, midline
154.0
2853
Male, age 76, midline
49.2
Posteroventral cochlear nucleus nTPM: 94.5
2135
Female, age 91, both hemispheres
114.6
2341
Male, age 80, both hemispheres
97.9
2752
Female, age 85, both hemispheres
94.3
2070
Male, age 76, both hemispheres
90.4
2371
Male, age 61, both hemispheres
75.4
Principal sensory trigeminal nucleus nTPM: 141.2
2158
Male, age 61, both hemispheres
211.7
2008
Male, age 80, left hemisphere
153.6
2367
Female, age 91, left hemisphere
142.0
2324
Male, age 76, both hemispheres
57.3
Reticular pontine nucleus, caudal nTPM: 143.7
2092
Male, age 76, both hemispheres
156.4
2457
Female, age 91, both hemispheres
148.9
2332
Male, age 80, right hemisphere
143.0
2559
Male, age 74, both hemispheres
126.5
Reticular pontine nucleus, oral nTPM: 122.1
2361
Male, age 74, both hemispheres
170.3
2012
Female, age 85, both hemispheres
148.6
2366
Female, age 91, both hemispheres
147.9
1939
Male, age 80, both hemispheres
81.6
2167
Male, age 76, both hemispheres
62.0
Reticulotegmental nucleus nTPM: 107.8
2452
Male, age 74, both hemispheres
118.6
2325
Male, age 76, both hemispheres
109.9
2322
Female, age 91, both hemispheres
101.7
2333
Male, age 80, both hemispheres
101.0
Spinal trigeminal nucleus, oral nTPM: 66.1
2164
Male, age 80, both hemispheres
74.0
2737
Female, age 85, both hemispheres
63.4
1978
Male, age 76, both hemispheres
60.9
Subcoeruleus area nTPM: 97.8
2089
Male, age 76, left hemisphere
142.0
1958
Male, age 80, both hemispheres
113.0
2369
Female, age 85, left hemisphere
90.9
2451
Male, age 74, both hemispheres
74.3
2323
Female, age 91, left hemisphere
68.6
Superior olive nTPM: 154.4
1875
Female, age 85, both hemispheres
200.7
2020
Male, age 76, both hemispheres
154.8
2364
Male, age 74, right hemisphere
149.4
2561
Female, age 91, both hemispheres
137.7
2329
Male, age 80, right hemisphere
129.3
Ventral periolivary nuclei nTPM: 158.4
2130
Female, age 85, both hemispheres
189.4
2165
Male, age 80, both hemispheres
167.2
2023
Male, age 76, both hemispheres
147.9
2794
Female, age 91, left hemisphere
128.9
Ventrolateral tegmental area, A5 NE cell group nTPM: 131.5
2449
Male, age 74, both hemispheres
165.9
1959
Male, age 76, both hemispheres
163.6
2456
Female, age 91, both hemispheres
130.6
2161
Male, age 80, both hemispheres
126.6
2840
Female, age 85, both hemispheres
118.9
2359
Male, age 61, both hemispheres
83.5
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
104.7
Pig sample
Sample description
nTPM
Pons nTPM: 104.8
Samples: 4
Max nTPM: 206.5
Min nTPM: 36.9
Sample A
Female
206.5
Sample B
Female
36.9
Sample C
Male
37.0
Sample D
Male
138.6
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
