MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.5 nTPM
HPA Brain:112.8 nTPM
GTEx:16.5 nTPM
FANTOM5:220.8 Scaled Tags Per Million
Pig:125.1 nTPM
Mouse:62.2 nTPM
Allen mouse:14.3 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 112.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 84.3
2019 Male, age 18, unknown 168.1
2411 Female, age 72, unknown 97.0
2666 Male, age 74, left hemisphere 83.8
1827 Male, age 72, unknown 81.1
1830 Male, age 51, unknown 78.3
1870 Female, age 42, unknown 75.6
2828 Female, age 72, unknown 74.1
1833 Male, age 53, unknown 70.6
2586 Male, age 75, left hemisphere 65.0
2219 Male, age 76, both hemispheres 49.1
Dorsal raphe nucleus
nTPM: 42.2
2750 Male, age 76, both hemispheres 59.0
1828 Male, age 53, unknown 45.7
2016 Female, age 72, unknown 42.2
2298 Female, age 72, unknown 34.6
2047 Male, age 72, unknown 29.4
Inferior colliculus
nTPM: 51.3
1848 Female, age 42, unknown 57.4
2097 Female, age 72, unknown 56.5
1890 Male, age 53, unknown 47.6
2849 Male, age 72, unknown 43.6
Median raphe nucleus
nTPM: 41.0
2220 Male, age 76, midline 41.0
Periaquaductal grey, anterior
nTPM: 41.8
1795 Male, age 51, unknown 45.3
1947 Male, age 18, unknown 40.5
2502 Female, age 75, unknown 39.7
Periaquaductal grey, dorsal
nTPM: 42.0
1831 Male, age 72, unknown 62.5
2464 Female, age 72, unknown 60.5
1840 Male, age 53, unknown 22.9
2850 Male, age 76, both hemispheres 22.0
Periaquaductal grey, lateral
nTPM: 46.3
2272 Male, age 74, both hemispheres 65.2
2053 Male, age 18, unknown 51.3
2140 Male, age 76, both hemispheres 22.4
Pretectal area
nTPM: 112.8
1944 Female, age 72, unknown 205.3
1816 Male, age 51, unknown 190.4
2007 Male, age 72, unknown 184.2
1817 Female, age 42, unknown 167.5
1815 Male, age 53, unknown 147.6
2407 Male, age 75, both hemispheres 86.2
2667 Female, age 75, unknown 68.6
2273 Male, age 74, both hemispheres 57.9
2316 Male, age 76, right hemisphere 53.0
2825 Male, age 18, unknown 40.5
2224 Female, age 72, unknown 39.9
Red nucleus
nTPM: 96.5
2785 Male, age 18, unknown 167.2
2588 Male, age 74, left hemisphere 113.5
2503 Female, age 72, unknown 105.0
1865 Male, age 51, unknown 104.3
1821 Female, age 72, unknown 102.4
1954 Female, age 42, unknown 96.6
1904 Male, age 53, unknown 92.3
2823 Male, age 76, right hemisphere 89.0
2584 Male, age 75, left hemisphere 83.4
2769 Male, age 72, unknown 73.5
2227 Male, age 72, unknown 73.0
2725 Female, age 75, unknown 57.6
Substantia nigra
nTPM: 72.5
1889 Female, age 72, unknown 146.4
1941 Male, age 53, unknown 134.9
2583 Male, age 75, right hemisphere 95.6
2409 Female, age 72, unknown 83.3
2590 Female, age 75, unknown 63.3
1851 Male, age 51, unknown 49.9
2241 Male, age 72, unknown 41.2
2665 Male, age 74, both hemispheres 40.8
1916 Female, age 42, unknown 40.7
2699 Male, age 18, unknown 29.2
Superior colliculus
nTPM: 109.5
2668 Female, age 75, unknown 230.0
2087 Female, age 72, unknown 163.6
1913 Female, age 42, unknown 124.8
1995 Male, age 72, unknown 120.0
2261 Male, age 18, unknown 111.0
2587 Male, age 74, left hemisphere 91.4
1895 Male, age 76, right hemisphere 77.9
1796 Male, age 53, unknown 69.0
1839 Male, age 51, unknown 57.8
2664 Male, age 75, both hemispheres 49.7
Ventral tegmental area
nTPM: 50.7
2410 Female, age 72, unknown 86.0
2223 Female, age 72, unknown 50.7
1915 Female, age 42, unknown 44.6
1942 Male, age 51, unknown 43.9
2218 Male, age 76, both hemispheres 41.8
2021 Male, age 53, unknown 37.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 16.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.5
Samples: 139

Max nTPM: 87.9
Min nTPM: 1.5
Std nTPM: 11.5
Median nTPM: 13.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 87.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 56.3
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 51.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 48.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 42.1
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 40.0
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 38.5
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 38.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 36.7
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 35.8
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 35.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 220.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 220.8
FF:10158-103A5 76 years, female 220.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 125.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 38.6
Samples: 4

Max nTPM: 49.5
Min nTPM: 22.6
Sample A Female 49.2
Sample B Female 22.6
Sample C Male 33.0
Sample D Male 49.5
Midbrain
nTPM: 103.8
Samples: 4

Max nTPM: 261.0
Min nTPM: 36.8
Sample A Female 48.8
Sample B Female 36.8
Sample C Male 261.0
Sample D Male 68.4
Periaqueductal gray
nTPM: 30.7
Samples: 3

Max nTPM: 36.5
Min nTPM: 27.7
Sample B Female 36.5
Sample C Male 27.9
Sample D Male 27.7
Superior colliculi
nTPM: 125.1
Samples: 4

Max nTPM: 261.3
Min nTPM: 66.3
Sample A Female 66.3
Sample B Female 67.1
Sample C Male 261.3
Sample D Male 105.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 62.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 62.2
Samples: 4

Max nTPM: 71.3
Min nTPM: 47.5
Sample A Male 47.5
Sample B Male 66.8
Sample C Female 71.3
Sample D Female 63.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 14.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 14.3
70302093 Antisense, RP_050607_03_F01, Mouse strain C57BL/6J (56 days, male) 14.3
71924238 Antisense, RP_050607_03_F01, Mouse strain C57BL/6J (56 days, male) 10.6

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