We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LARP1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
25.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
75.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
75.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
72.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
67.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
66.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
65.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
63.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
62.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
61.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
60.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
58.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
56.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
55.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
54.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
52.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
52.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
51.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
50.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
50.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
49.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
48.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
47.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
47.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
46.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
46.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
46.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
45.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
45.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
44.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
44.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
44.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
44.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
44.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
44.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
44.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
43.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
43.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
42.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
42.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
41.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
41.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
41.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
41.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
41.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
40.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
39.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
39.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
39.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
39.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
39.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
38.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
38.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
38.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
38.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
38.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
38.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
38.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
38.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
37.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
37.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
37.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
37.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
37.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
37.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
37.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
37.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
36.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
36.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
36.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
36.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
36.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
36.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
36.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
36.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
36.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
36.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
35.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
35.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
34.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
34.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
34.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
34.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
34.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
34.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
34.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
34.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
34.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
33.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
33.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
33.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
33.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
33.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
33.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
33.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
33.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
33.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
33.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
32.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
32.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
32.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
32.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
32.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
32.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
32.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
31.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
31.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
31.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
31.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
31.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
31.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
31.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
31.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
31.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
31.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
31.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
31.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
31.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
30.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
30.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
30.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
30.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
30.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
30.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
30.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
30.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
30.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
30.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
30.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
30.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
29.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
29.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
29.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
29.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
29.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
29.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
29.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
29.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
29.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
29.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
29.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
28.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
28.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
28.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
28.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
28.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
28.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
28.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
28.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
27.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
27.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
27.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
27.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
26.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
26.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
26.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
26.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
26.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
26.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
26.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
25.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
25.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
25.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
25.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
25.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
25.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
25.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
25.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
25.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
25.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
24.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
24.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
24.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
24.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
24.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
24.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
24.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
24.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
23.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
23.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
23.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
23.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
23.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
23.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
23.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
23.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
23.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
23.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
23.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
23.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
23.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
23.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
23.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
23.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
23.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
23.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
23.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
23.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
22.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
22.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
22.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
22.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
22.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
22.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
22.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
22.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
21.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
21.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
21.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
21.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
21.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
21.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
21.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
21.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
21.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
21.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
21.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
20.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
20.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
20.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
20.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
20.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
20.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
20.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
20.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
19.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
19.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
19.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
19.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
19.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
19.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
19.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
18.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
18.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
18.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
18.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
18.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
18.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
18.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
18.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
18.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
18.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
18.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
18.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
18.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
18.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
17.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
17.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
17.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
17.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
17.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
17.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
17.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
17.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
17.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
17.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
17.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
17.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
17.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
17.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
17.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
16.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
16.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
16.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
16.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
16.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
16.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
16.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
16.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
15.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
15.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
15.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
15.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
15.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
15.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
15.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
15.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
15.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
15.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
15.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
15.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
15.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
14.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
14.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
14.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
14.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
14.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
14.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
14.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
14.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
14.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
14.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
14.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
14.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
14.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
14.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
14.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
14.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
14.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
14.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
13.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
13.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
13.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
13.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
13.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
13.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
13.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
13.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
13.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
13.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
12.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
12.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
12.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
12.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
12.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
12.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
12.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
12.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
12.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
11.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
11.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
11.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
11.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
11.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
11.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
11.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
10.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
10.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
10.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
10.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
10.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
10.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
10.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
9.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
9.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
9.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
9.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
9.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
9.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
9.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
8.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
8.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
8.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
8.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
8.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
8.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
8.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
8.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
7.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
7.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
7.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
7.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
7.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
7.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
7.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
6.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
6.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
4.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LARP1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
30.4
Number of samples
231
Samples
Sample
Description
TPM
DO45267
0 years, male, NA, stage:3, dead, 570 days
67.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
61.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
59.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
58.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
56.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
55.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
54.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
53.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
53.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
51.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
51.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
49.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
49.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
48.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
48.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
48.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
47.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
47.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
47.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
47.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
47.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
45.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
45.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
45.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
45.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
45.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
45.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
44.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
44.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
44.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
44.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
44.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
44.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
43.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
43.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
42.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
42.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
42.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
41.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
41.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
41.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
41.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
41.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
40.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
40.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
40.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
39.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
39.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
39.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
39.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
39.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
39.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
38.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
38.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
37.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
37.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
37.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
37.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
37.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
36.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
36.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
36.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
36.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
36.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
35.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
35.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
35.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
35.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
35.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
34.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
34.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
34.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
34.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
34.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
34.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
34.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
34.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
33.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
33.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
33.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
33.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
33.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
33.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
33.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
33.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
33.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
33.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
33.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
32.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
32.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
32.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
32.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
32.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
32.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
32.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
31.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
31.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
31.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
31.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
31.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
31.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
31.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
31.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
31.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
30.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
30.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
30.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
30.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
30.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
30.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
30.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
30.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
30.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
30.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
30.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
29.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
29.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
29.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
29.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
29.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
29.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
29.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
29.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
29.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
28.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
28.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
28.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
28.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
28.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
28.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
28.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
28.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
27.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
27.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
27.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
27.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
27.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
27.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
27.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
26.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
26.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
26.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
26.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
26.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
26.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
25.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
25.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
25.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
25.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
25.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
25.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
25.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
25.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
25.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
24.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
24.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
24.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
24.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
23.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
23.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
23.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
23.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
23.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
23.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
23.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
23.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
23.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
23.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
23.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
22.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
22.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
22.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
22.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
22.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
22.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
21.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
21.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
21.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
21.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
21.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
21.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
21.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
21.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
21.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
20.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
20.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
20.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
20.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
20.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
20.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
20.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
20.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
20.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
19.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
19.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
19.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
19.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
18.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
18.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
18.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
17.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
17.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
17.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
16.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
16.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
16.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
16.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
16.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
15.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
15.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
15.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
15.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
15.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
14.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
14.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
14.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
14.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
12.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
12.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
12.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
12.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
12.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
12.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
11.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
11.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
11.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
10.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
10.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
10.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
9.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
7.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
865
Tumor
1.2
473
Tumor
1.0
285
Tumor
0.9
965
Tumor
0.9
1021
Tumor
0.8
557
Tumor
0.8
331
Tumor
0.8
537
Tumor
0.8
1025
Tumor
0.8
223
Tumor
0.8
951
Tumor
0.8
1013
Tumor
0.7
743
Tumor
0.7
923
Tumor
0.7
385
Tumor
0.7
351
Tumor
0.7
877
Tumor
0.7
517
Tumor
0.7
411
Tumor
0.6
131
Tumor
0.6
353
Tumor
0.6
713
Tumor
0.6
227
Tumor
0.6
277
Tumor
0.6
641
Tumor
0.6
147
Tumor
0.6
851
Tumor
0.5
1031
Tumor
0.5
355
Tumor
0.5
967
Tumor
0.5
523
Tumor
0.5
413
Tumor
0.5
1027
Tumor
0.5
571
Tumor
0.5
123
Tumor
0.5
497
Tumor
0.5
861
Tumor
0.5
211
Tumor
0.5
363
Tumor
0.5
221
Tumor
0.5
431
Tumor
0.5
937
Tumor
0.4
327
Tumor
0.4
881
Tumor
0.4
471
Tumor
0.4
617
Tumor
0.4
957
Tumor
0.4
553
Tumor
0.4
715
Tumor
0.4
487
Tumor
0.4
745
Tumor
0.4
393
Tumor
0.4
525
Tumor
0.4
387
Tumor
0.4
983
Tumor
0.4
533
Tumor
0.4
567
Tumor
0.4
535
Tumor
0.3
161
Tumor
0.3
665
Tumor
0.3
545
Tumor
0.3
647
Tumor
0.3
737
Tumor
0.3
395
Tumor
0.3
883
Tumor
0.3
483
Tumor
0.3
695
Tumor
0.3
663
Tumor
0.3
823
Tumor
0.3
267
Tumor
0.3
213
Tumor
0.3
777
Tumor
0.3
113
Tumor
0.3
443
Tumor
0.3
921
Tumor
0.3
915
Tumor
0.3
527
Tumor
0.3
697
Tumor
0.3
191
Tumor
0.3
367
Tumor
0.3
435
Tumor
0.2
724
Normal
0.2
913
Tumor
0.2
977
Tumor
0.2
481
Tumor
0.2
427
Tumor
0.2
135
Tumor
0.2
187
Tumor
0.2
661
Tumor
0.2
491
Tumor
0.2
685
Tumor
0.2
573
Tumor
0.2
257
Tumor
0.2
447
Tumor
0.2
467
Tumor
0.2
1043
Tumor
0.2
817
Tumor
0.2
513
Tumor
0.2
1041
Tumor
0.2
271
Tumor
0.2
493
Tumor
0.2
145
Tumor
0.1
391
Tumor
0.1
963
Tumor
0.1
867
Tumor
0.1
721
Tumor
0.1
415
Tumor
0.1
231
Tumor
0.1
911
Tumor
0.1
635
Tumor
0.1
975
Tumor
0.1
955
Tumor
0.1
451
Tumor
0.1
137
Tumor
0.1
953
Tumor
0.1
261
Tumor
0.1
357
Tumor
0.1
515
Tumor
0.1
615
Tumor
0.0
671
Tumor
0.0
383
Tumor
0.0
341
Tumor
0.0
423
Tumor
0.0
433
Tumor
0.0
958
Normal
0.0
857
Tumor
0.0
217
Tumor
0.0
297
Tumor
0.0
171
Tumor
0.0
465
Tumor
0.0
815
Tumor
0.0
546
Normal
0.0
195
Tumor
0.0
873
Tumor
0.0
313
Tumor
0.0
534
Normal
0.0
944
Normal
0.0
112
Tumor
0.0
461
Tumor
0.0
884
Normal
0.0
311
Tumor
0.0
361
Tumor
0.0
938
Normal
0.0
455
Tumor
0.0
127
Tumor
0.0
966
Normal
0.0
627
Tumor
-0.1
964
Normal
-0.1
518
Normal
-0.1
375
Tumor
-0.1
554
Normal
-0.1
484
Normal
-0.1
328
Normal
-0.1
978
Normal
-0.1
524
Normal
-0.1
912
Normal
-0.1
477
Tumor
-0.1
1045
Tumor
-0.1
922
Normal
-0.1
528
Normal
-0.1
536
Normal
-0.1
968
Normal
-0.1
463
Tumor
-0.1
412
Normal
-0.1
786
Normal
-0.1
952
Normal
-0.1
943
Tumor
-0.1
984
Normal
-0.1
283
Tumor
-0.1
824
Normal
-0.1
563
Tumor
-0.1
956
Normal
-0.1
864
Normal
-0.1
918
Normal
-0.1
452
Normal
-0.1
916
Normal
-0.1
981
Tumor
-0.1
982
Normal
-0.1
868
Normal
-0.1
466
Normal
-0.1
514
Normal
-0.1
727
Tumor
-0.1
852
Normal
-0.1
416
Normal
-0.1
1046
Normal
-0.1
1014
Normal
-0.1
365
Tumor
-0.1
882
Normal
-0.1
526
Normal
-0.1
474
Normal
-0.1
572
Normal
-0.1
664
Normal
-0.1
436
Normal
-0.1
516
Normal
-0.1
926
Normal
-0.1
356
Normal
-0.1
212
Normal
-0.1
448
Normal
-0.1
636
Normal
-0.1
1016
Normal
-0.2
954
Normal
-0.2
228
Normal
-0.2
464
Normal
-0.2
924
Normal
-0.2
286
Normal
-0.2
628
Normal
-0.2
1028
Normal
-0.2
284
Normal
-0.2
858
Normal
-0.2
456
Normal
-0.2
1044
Normal
-0.2
917
Tumor
-0.2
755
Tumor
-0.2
738
Normal
-0.2
185
Tumor
-0.2
818
Normal
-0.2
538
Normal
-0.2
148
Normal
-0.2
862
Normal
-0.2
1032
Normal
-0.2
814
Normal
-0.2
742
Normal
-0.2
616
Normal
-0.2
863
Tumor
-0.2
222
Normal
-0.2
568
Normal
-0.2
728
Normal
-0.2
866
Normal
-0.2
756
Normal
-0.2
446
Normal
-0.2
648
Normal
-0.2
494
Normal
-0.2
785
Tumor
-0.2
462
Normal
-0.2
976
Normal
-0.2
364
Normal
-0.2
714
Normal
-0.2
874
Normal
-0.2
816
Normal
-0.2
172
Normal
-0.2
746
Normal
-0.2
298
Normal
-0.2
716
Normal
-0.2
686
Normal
-0.2
312
Normal
-0.2
722
Normal
-0.2
698
Normal
-0.2
368
Normal
-0.2
472
Normal
-0.2
723
Tumor
-0.2
444
Normal
-0.2
914
Normal
-0.2
488
Normal
-0.2
114
Normal
-0.2
1022
Normal
-0.2
666
Normal
-0.2
386
Normal
-0.2
482
Normal
-0.2
468
Normal
-0.2
196
Normal
-0.2
214
Normal
-0.2
878
Normal
-0.2
492
Normal
-0.2
278
Normal
-0.2
1026
Normal
-0.3
778
Normal
-0.3
162
Normal
-0.3
564
Normal
-0.3
434
Normal
-0.3
132
Normal
-0.3
925
Tumor
-0.3
362
Normal
-0.3
136
Normal
-0.3
366
Normal
-0.3
141
Tumor
-0.3
186
Normal
-0.3
124
Normal
-0.3
126
Normal
-0.3
428
Normal
-0.3
138
Normal
-0.3
1042
Normal
-0.3
574
Normal
-0.3
142
Normal
-0.3
478
Normal
-0.3
224
Normal
-0.3
672
Normal
-0.3
422
Normal
-0.3
426
Normal
-0.3
268
Normal
-0.3
384
Normal
-0.3
498
Normal
-0.3
813
Tumor
-0.3
258
Normal
-0.3
394
Normal
-0.3
696
Normal
-0.3
388
Normal
-0.3
396
Normal
-0.3
111
Normal
-0.3
424
Normal
-0.3
558
Normal
-0.3
218
Normal
-0.3
376
Normal
-0.3
414
Normal
-0.3
642
Normal
-0.3
232
Normal
-0.3
262
Normal
-0.3
188
Normal
-0.3
128
Normal
-0.3
192
Normal
-0.3
421
Tumor
-0.3
618
Normal
-0.3
392
Normal
-0.3
332
Normal
-0.3
744
Normal
-0.4
741
Tumor
-0.4
662
Normal
-0.4
425
Tumor
-0.4
432
Normal
-0.4
314
Normal
-0.4
352
Normal
-0.4
344
Normal
-0.4
445
Tumor
-0.4
358
Normal
-0.4
146
Normal
-0.4
125
Tumor
-0.4
272
Normal
-0.4
342
Normal
-0.5
354
Normal
-0.5
1015
Tumor
-0.5
343
Tumor
-0.6
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
