MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:41.8 nTPM
HPA Brain:73.1 nTPM
GTEx:41.8 nTPM
FANTOM5:76.6 Scaled Tags Per Million
Pig:31.4 nTPM
Mouse:24.0 nTPM
Allen mouse:6.5 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 73.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 61.4
2219 Male, age 76, both hemispheres 84.2
2019 Male, age 18, unknown 78.8
1833 Male, age 53, unknown 64.7
2666 Male, age 74, left hemisphere 62.4
2411 Female, age 72, unknown 61.4
1830 Male, age 51, unknown 59.1
1827 Male, age 72, unknown 56.3
1870 Female, age 42, unknown 51.5
2828 Female, age 72, unknown 48.3
2586 Male, age 75, left hemisphere 47.2
Dorsal raphe nucleus
nTPM: 50.5
2750 Male, age 76, both hemispheres 58.9
1828 Male, age 53, unknown 53.5
2047 Male, age 72, unknown 47.5
2016 Female, age 72, unknown 47.0
2298 Female, age 72, unknown 45.9
Inferior colliculus
nTPM: 58.5
2097 Female, age 72, unknown 66.7
1890 Male, age 53, unknown 61.9
2849 Male, age 72, unknown 55.4
1848 Female, age 42, unknown 50.1
Median raphe nucleus
nTPM: 50.9
2220 Male, age 76, midline 50.9
Periaquaductal grey, anterior
nTPM: 45.8
1795 Male, age 51, unknown 48.9
1947 Male, age 18, unknown 46.3
2502 Female, age 75, unknown 42.2
Periaquaductal grey, dorsal
nTPM: 54.2
1831 Male, age 72, unknown 55.9
2464 Female, age 72, unknown 54.6
2850 Male, age 76, both hemispheres 54.5
1840 Male, age 53, unknown 51.8
Periaquaductal grey, lateral
nTPM: 54.4
2053 Male, age 18, unknown 56.7
2272 Male, age 74, both hemispheres 55.0
2140 Male, age 76, both hemispheres 51.6
Pretectal area
nTPM: 72.9
1816 Male, age 51, unknown 101.2
1944 Female, age 72, unknown 99.0
1815 Male, age 53, unknown 87.2
1817 Female, age 42, unknown 87.1
2667 Female, age 75, unknown 77.4
2007 Male, age 72, unknown 76.8
2316 Male, age 76, right hemisphere 60.1
2407 Male, age 75, both hemispheres 60.1
2273 Male, age 74, both hemispheres 54.3
2224 Female, age 72, unknown 49.9
2825 Male, age 18, unknown 48.5
Red nucleus
nTPM: 65.1
2823 Male, age 76, right hemisphere 84.7
2785 Male, age 18, unknown 72.5
2503 Female, age 72, unknown 72.3
2725 Female, age 75, unknown 70.2
1821 Female, age 72, unknown 69.5
2588 Male, age 74, left hemisphere 67.8
1865 Male, age 51, unknown 65.0
1904 Male, age 53, unknown 64.7
1954 Female, age 42, unknown 57.3
2227 Male, age 72, unknown 54.1
2584 Male, age 75, left hemisphere 53.9
2769 Male, age 72, unknown 49.6
Substantia nigra
nTPM: 73.1
2241 Male, age 72, unknown 111.3
2409 Female, age 72, unknown 101.2
1889 Female, age 72, unknown 79.2
2583 Male, age 75, right hemisphere 69.0
1851 Male, age 51, unknown 67.6
2590 Female, age 75, unknown 63.7
2699 Male, age 18, unknown 63.2
1916 Female, age 42, unknown 61.2
1941 Male, age 53, unknown 59.5
2665 Male, age 74, both hemispheres 55.1
Superior colliculus
nTPM: 63.2
2087 Female, age 72, unknown 84.8
1895 Male, age 76, right hemisphere 74.1
1913 Female, age 42, unknown 70.7
2261 Male, age 18, unknown 65.7
1995 Male, age 72, unknown 65.2
2668 Female, age 75, unknown 62.8
2587 Male, age 74, left hemisphere 58.9
1796 Male, age 53, unknown 58.1
1839 Male, age 51, unknown 52.3
2664 Male, age 75, both hemispheres 39.3
Ventral tegmental area
nTPM: 59.2
2410 Female, age 72, unknown 69.9
2223 Female, age 72, unknown 64.9
2218 Male, age 76, both hemispheres 61.3
1915 Female, age 42, unknown 58.7
2021 Male, age 53, unknown 52.2
1942 Male, age 51, unknown 48.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 41.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 41.8
Samples: 139

Max nTPM: 86.6
Min nTPM: 16.9
Std nTPM: 12.1
Median nTPM: 41.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 86.6
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 71.8
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 70.0
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 67.1
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 67.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 66.7
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 66.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 65.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 61.8
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 61.7
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 60.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 76.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 76.6
FF:10158-103A5 76 years, female 76.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 31.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 24.3
Samples: 4

Max nTPM: 31.2
Min nTPM: 21.7
Sample A Female 22.6
Sample B Female 21.8
Sample C Male 31.2
Sample D Male 21.7
Midbrain
nTPM: 31.4
Samples: 4

Max nTPM: 41.5
Min nTPM: 19.4
Sample A Female 19.4
Sample B Female 26.6
Sample C Male 41.5
Sample D Male 38.1
Periaqueductal gray
nTPM: 23.9
Samples: 3

Max nTPM: 24.3
Min nTPM: 23.5
Sample B Female 23.9
Sample C Male 24.3
Sample D Male 23.5
Superior colliculi
nTPM: 28.1
Samples: 4

Max nTPM: 33.1
Min nTPM: 22.6
Sample A Female 24.0
Sample B Female 22.6
Sample C Male 33.1
Sample D Male 32.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 24.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 24.0
Samples: 4

Max nTPM: 25.7
Min nTPM: 22.8
Sample A Male 24.4
Sample B Male 22.8
Sample C Female 25.7
Sample D Female 22.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 6.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.5
70302111 Antisense, RP_050607_03_F04, Mouse strain C57BL/6J (56 days, male) 9.3
74988334 Antisense, RP_060315_05_D02, Mouse strain C57BL/6J (56 days, male) 3.7

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