HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:35.3 nTPM
HPA Brain:80.2 nTPM
GTEx:35.3 nTPM
FANTOM5:51.0 Scaled Tags Per Million
Pig:39.2 nTPM
Mouse:18.8 nTPM
Allen mouse:6.8 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 80.2
Sample id Sample description nTPM
Hippocampus
nTPM: 51.0
2529 Female, age 94, left hemisphere 60.0
1911 Female, age 85, right hemisphere 55.6
2621 Female, age 67, right hemisphere 55.0
2148 Female, age 91, left hemisphere 51.7
1898 Male, age 80, left hemisphere 43.1
1855 Male, age 76, left hemisphere 40.6
Dentate gyrus
nTPM: 52.2
2246 Female, age 85, both hemispheres 60.5
2530 Female, age 94, left hemisphere 56.7
2531 Female, age 67, both hemispheres 55.1
1927 Female, age 91, both hemispheres 51.8
2528 Male, age 74, both hemispheres 48.2
2010 Male, age 76, both hemispheres 41.1
Entorhinal gyrus
nTPM: 70.4
1938 Female, age 85, left hemisphere 80.3
2686 Male, age 75, right hemisphere 77.0
2613 Female, age 94, left hemisphere 72.6
1787 Male, age 76, left hemisphere 68.6
2764 Male, age 80, right hemisphere 66.3
2117 Female, age 91, right hemisphere 57.7
Hippocampus, CA1
nTPM: 52.5
2749 Male, age 80, left hemisphere 54.7
2082 Female, age 91, right hemisphere 54.4
2045 Male, age 76, both hemispheres 53.1
2527 Male, age 74, both hemispheres 51.5
1873 Female, age 85, both hemispheres 48.7
Hippocampus, CA2
nTPM: 52.6
2113 Female, age 91, right hemisphere 59.6
2437 Female, age 94, left hemisphere 57.6
1940 Female, age 85, left hemisphere 53.1
2249 Male, age 74, both hemispheres 50.5
1892 Male, age 76, both hemispheres 48.6
1963 Male, age 80, left hemisphere 46.0
Hippocampus, CA3
nTPM: 58.1
1891 Female, age 85, both hemispheres 68.9
2620 Female, age 94, left hemisphere 60.8
2436 Male, age 74, both hemispheres 59.1
1867 Male, age 76, both hemispheres 54.9
2861 Female, age 67, both hemispheres 53.9
2137 Male, age 80, left hemisphere 51.0
Parahippocampal cortex
nTPM: 69.3
1850 Male, age 80, both hemispheres 86.2
1933 Female, age 85, both hemispheres 74.8
2693 Female, age 94, both hemispheres 74.7
2532 Female, age 72, left hemisphere 73.6
2692 Male, age 74, both hemispheres 73.1
1990 Female, age 91, right hemisphere 67.6
2622 Female, age 67, right hemisphere 63.4
2018 Male, age 76, both hemispheres 62.7
2245 Female, age 91, both hemispheres 61.6
2250 Female, age 67, right hemisphere 55.6
Perirhinal gyrus
nTPM: 80.2
1794 Male, age 80, right hemisphere 84.4
1841 Female, age 85, right hemisphere 84.3
2848 Male, age 76, right hemisphere 84.2
1847 Female, age 91, left hemisphere 75.9
2521 Female, age 94, right hemisphere 72.3
Subiculum
nTPM: 62.2
2438 Female, age 94, left hemisphere 73.9
1901 Male, age 80, both hemispheres 67.3
1977 Female, age 85, both hemispheres 64.5
2619 Male, age 74, both hemispheres 61.4
2042 Male, age 76, both hemispheres 55.4
2729 Female, age 91, right hemisphere 50.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 35.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 35.3
Samples: 197

Max nTPM: 75.2
Min nTPM: 10.9
Std nTPM: 9.2
Median nTPM: 34.7
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 75.2
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 61.4
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 60.9
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 60.7
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 59.1
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 58.5
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 58.1
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 55.4
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 53.5
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 52.7
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 51.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 51.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 51.0
FF:10153-102I9 76 years, female 58.4
FF:10169-103B7 60 years, female 43.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 39.2
Pig sample Sample description nTPM
Subiculum
nTPM: 35.1
Samples: 4

Max nTPM: 36.8
Min nTPM: 33.5
Sample A Female 36.2
Sample B Female 33.7
Sample C Male 36.8
Sample D Male 33.5
Dorsal hippocampus
nTPM: 31.6
Samples: 4

Max nTPM: 37.2
Min nTPM: 26.5
Sample A Female 29.0
Sample B Female 33.7
Sample C Male 26.5
Sample D Male 37.2
Entorhinal cortex
nTPM: 39.2
Samples: 4

Max nTPM: 42.8
Min nTPM: 35.9
Sample A Female 39.7
Sample B Female 38.2
Sample C Male 35.9
Sample D Male 42.8
Ventral hippocampus
nTPM: 33.8
Samples: 4

Max nTPM: 36.2
Min nTPM: 31.4
Sample A Female 33.0
Sample B Female 36.2
Sample C Male 31.4
Sample D Male 34.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 18.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 18.8
Samples: 4

Max nTPM: 21.3
Min nTPM: 16.4
Sample A Male 18.5
Sample B Male 21.3
Sample C Female 18.9
Sample D Female 16.4
Hippocampal formation
nTPM: 16.6
Samples: 4

Max nTPM: 19.8
Min nTPM: 13.7
Sample A Male 19.8
Sample B Male 17.0
Sample C Female 13.7
Sample D Female 15.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 6.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 6.8
70302111 Antisense, RP_050607_03_F04, Mouse strain C57BL/6J (56 days, male) 9.3
74988334 Antisense, RP_060315_05_D02, Mouse strain C57BL/6J (56 days, male) 4.2

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