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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PTPRK is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
74.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
52.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
48.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
48.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
45.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
39.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
35.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
33.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
33.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
32.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
30.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
28.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
27.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
27.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
26.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
25.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
25.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
25.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
24.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
24.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
24.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
23.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
23.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
23.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
23.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
23.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
23.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
22.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
22.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
21.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
21.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
21.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
21.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
21.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
21.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
20.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
20.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
20.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
20.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
20.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
20.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
19.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
19.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
19.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
19.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
19.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
19.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
19.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
19.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
19.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
18.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
18.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
17.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
17.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
17.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
17.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
17.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
17.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
16.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
16.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
16.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
16.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
16.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
16.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
16.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
15.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
15.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
15.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
15.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
15.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
15.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
15.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
15.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
14.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
14.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
14.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
14.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
14.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
14.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
14.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
14.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
14.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
14.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
14.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
14.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
14.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
14.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
14.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
14.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
14.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
14.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
14.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
13.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
13.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
13.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
13.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
13.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
13.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
13.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
13.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
13.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
13.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
13.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
13.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
13.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
13.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
13.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
13.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
13.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
12.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
12.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
12.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
12.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
12.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
12.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
12.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
12.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
12.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
12.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
12.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
12.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
12.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
12.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
12.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
12.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
12.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
12.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
12.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
12.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
11.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
11.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
11.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
11.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
11.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
11.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
11.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
11.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
11.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
11.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
11.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
11.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
11.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
11.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
11.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
10.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
10.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
10.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
10.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
10.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
10.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
10.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
10.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
10.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
10.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
10.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
10.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
10.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
10.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
10.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
10.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
10.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
10.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
10.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
9.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
9.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
9.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
9.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
9.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
9.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
9.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
9.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
9.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
9.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
9.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
9.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
9.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
8.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
8.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
8.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
8.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
8.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
8.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
8.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
8.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
8.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
8.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
8.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
8.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
8.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
8.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
8.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
8.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
8.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
8.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
8.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
8.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
8.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
8.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
8.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
8.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
8.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
8.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
8.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
8.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
7.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
7.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
7.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
7.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
7.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
7.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
7.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
7.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
7.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
7.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
7.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
7.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
7.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
7.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
7.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
7.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
7.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
7.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
7.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
6.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
6.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
6.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
6.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
6.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
6.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
6.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
6.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
6.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
6.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
6.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
6.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
6.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
6.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
6.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
6.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
6.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
5.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
5.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
5.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
5.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
5.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
5.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
5.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
5.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
5.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
5.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
5.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
5.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
5.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
5.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
5.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
5.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
5.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
5.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
5.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
5.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
5.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
5.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
5.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
4.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
4.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
4.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
4.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
4.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
4.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
4.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
4.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
4.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
4.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
4.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
4.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
4.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
4.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
3.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
3.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
3.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
2.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
2.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
2.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PTPRK is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.1
Number of samples
231
Samples
Sample
Description
TPM
DO45137
0 years, male, NA, stage:1, alive, 1320 days
45.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
41.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
39.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
38.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
34.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
33.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
33.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
30.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
28.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
27.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
27.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
27.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
26.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
25.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
24.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
24.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
24.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
23.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
23.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
23.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
22.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
22.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
21.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
21.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
21.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
21.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
21.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
20.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
20.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
20.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
20.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
20.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
20.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
19.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
19.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
18.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
18.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
18.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
18.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
18.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
18.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
17.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
17.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
17.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
17.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
17.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
17.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
17.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
17.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
17.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
17.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
16.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
16.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
16.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
16.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
16.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
16.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
16.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
16.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
16.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
16.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
16.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
16.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
16.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
16.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
15.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
15.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
15.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
15.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
15.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
15.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
15.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
15.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
14.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
14.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
14.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
14.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
14.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
14.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
14.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
14.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
14.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
14.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
14.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
14.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
14.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
14.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
14.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
14.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
14.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
13.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
13.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
13.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
13.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
13.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
13.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
13.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
13.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
13.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
13.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
13.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
12.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
12.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
12.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
12.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
12.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
12.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
12.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
12.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
12.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
12.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
11.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
11.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
11.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
11.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
11.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
11.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
11.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
11.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
11.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
11.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
11.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
11.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
11.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
10.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
10.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
10.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
10.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
10.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
10.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
10.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
10.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
10.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
10.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
10.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
10.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
10.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
9.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
9.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
9.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
9.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
9.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
9.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
9.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
9.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
9.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
9.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
9.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
9.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
9.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
9.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
9.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
9.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
9.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
9.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
9.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
9.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
9.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
9.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
9.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
8.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
8.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
8.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
8.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
8.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
8.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
8.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
8.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
8.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
8.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
8.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
8.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
8.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
8.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
7.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
7.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
7.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
7.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
7.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
7.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
7.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
7.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
7.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
7.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
7.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
7.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
7.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
7.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
7.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
7.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
7.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
6.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
6.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
6.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
6.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
6.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
6.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
6.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
6.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
6.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
5.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
5.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
5.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
5.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
5.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
5.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
5.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
5.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
5.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
5.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
5.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
5.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
5.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
4.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
4.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
4.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
4.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
4.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
4.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
4.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
3.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
2.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
2.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
743
Tumor
1.1
131
Tumor
1.0
425
Tumor
1.0
777
Tumor
0.9
553
Tumor
0.8
147
Tumor
0.6
497
Tumor
0.6
865
Tumor
0.5
285
Tumor
0.5
473
Tumor
0.5
538
Normal
0.5
713
Tumor
0.5
1021
Tumor
0.5
695
Tumor
0.5
665
Tumor
0.5
123
Tumor
0.5
343
Tumor
0.4
741
Tumor
0.4
981
Tumor
0.4
313
Tumor
0.4
617
Tumor
0.4
967
Tumor
0.4
883
Tumor
0.4
465
Tumor
0.4
917
Tumor
0.4
965
Tumor
0.4
277
Tumor
0.3
431
Tumor
0.3
427
Tumor
0.3
568
Normal
0.3
672
Normal
0.3
923
Tumor
0.3
867
Tumor
0.3
311
Tumor
0.3
727
Tumor
0.3
411
Tumor
0.3
666
Normal
0.3
355
Tumor
0.3
478
Normal
0.3
445
Tumor
0.3
924
Normal
0.3
554
Normal
0.3
361
Tumor
0.3
977
Tumor
0.3
527
Tumor
0.3
271
Tumor
0.3
954
Normal
0.3
451
Tumor
0.3
363
Tumor
0.3
344
Normal
0.3
915
Tumor
0.3
563
Tumor
0.2
686
Normal
0.2
1043
Tumor
0.2
515
Tumor
0.2
696
Normal
0.2
487
Tumor
0.2
395
Tumor
0.2
722
Normal
0.2
817
Tumor
0.2
943
Tumor
0.2
714
Normal
0.2
664
Normal
0.2
185
Tumor
0.2
443
Tumor
0.2
135
Tumor
0.2
957
Tumor
0.2
471
Tumor
0.2
823
Tumor
0.2
938
Normal
0.2
112
Tumor
0.2
1045
Tumor
0.2
567
Tumor
0.2
937
Tumor
0.2
433
Tumor
0.2
535
Tumor
0.2
635
Tumor
0.2
615
Tumor
0.2
697
Tumor
0.2
963
Tumor
0.2
211
Tumor
0.2
227
Tumor
0.2
663
Tumor
0.2
745
Tumor
0.2
423
Tumor
0.2
498
Normal
0.2
564
Normal
0.2
982
Normal
0.2
448
Normal
0.2
186
Normal
0.2
1014
Normal
0.1
642
Normal
0.1
914
Normal
0.1
877
Tumor
0.1
187
Tumor
0.1
1013
Tumor
0.1
546
Normal
0.1
384
Normal
0.1
744
Normal
0.1
483
Tumor
0.1
492
Normal
0.1
662
Normal
0.1
647
Tumor
0.1
881
Tumor
0.1
455
Tumor
0.1
698
Normal
0.1
342
Normal
0.1
716
Normal
0.1
874
Normal
0.1
444
Normal
0.1
436
Normal
0.1
447
Tumor
0.1
785
Tumor
0.1
984
Normal
0.1
916
Normal
0.1
148
Normal
0.1
426
Normal
0.1
353
Tumor
0.1
446
Normal
0.1
533
Tumor
0.1
1031
Tumor
0.1
648
Normal
0.1
944
Normal
0.1
141
Tumor
0.1
756
Normal
0.1
558
Normal
0.1
488
Normal
0.1
1028
Normal
0.1
435
Tumor
0.1
861
Tumor
0.1
922
Normal
0.1
863
Tumor
0.1
111
Normal
0.1
332
Normal
0.1
113
Tumor
0.0
956
Normal
0.0
421
Tumor
0.0
912
Normal
0.0
534
Normal
0.0
477
Tumor
0.0
128
Normal
0.0
536
Normal
0.0
367
Tumor
0.0
224
Normal
0.0
192
Normal
0.0
926
Normal
0.0
132
Normal
0.0
721
Tumor
0.0
114
Normal
0.0
852
Normal
0.0
484
Normal
0.0
968
Normal
0.0
572
Normal
0.0
746
Normal
0.0
545
Tumor
0.0
124
Normal
0.0
434
Normal
0.0
142
Normal
0.0
1025
Tumor
0.0
953
Tumor
0.0
1046
Normal
0.0
462
Normal
0.0
414
Normal
0.0
911
Tumor
0.0
742
Normal
0.0
161
Tumor
0.0
975
Tumor
0.0
172
Normal
0.0
618
Normal
0.0
1026
Normal
0.0
494
Normal
0.0
424
Normal
0.0
221
Tumor
0.0
1044
Normal
0.0
824
Normal
0.0
212
Normal
0.0
571
Tumor
0.0
298
Normal
0.0
818
Normal
0.0
412
Normal
0.0
188
Normal
0.0
878
Normal
0.0
858
Normal
0.0
778
Normal
0.0
375
Tumor
0.0
278
Normal
0.0
162
Normal
0.0
312
Normal
0.0
223
Tumor
0.0
482
Normal
0.0
137
Tumor
0.0
523
Tumor
-0.1
528
Normal
-0.1
616
Normal
-0.1
125
Tumor
-0.1
1042
Normal
-0.1
376
Normal
-0.1
387
Tumor
-0.1
286
Normal
-0.1
955
Tumor
-0.1
723
Tumor
-0.1
314
Normal
-0.1
357
Tumor
-0.1
1016
Normal
-0.1
882
Normal
-0.1
393
Tumor
-0.1
816
Normal
-0.1
268
Normal
-0.1
918
Normal
-0.1
422
Normal
-0.1
493
Tumor
-0.1
517
Tumor
-0.1
392
Normal
-0.1
228
Normal
-0.1
574
Normal
-0.1
472
Normal
-0.1
138
Normal
-0.1
524
Normal
-0.1
127
Tumor
-0.1
518
Normal
-0.1
952
Normal
-0.1
921
Tumor
-0.1
976
Normal
-0.1
728
Normal
-0.1
737
Tumor
-0.1
1015
Tumor
-0.1
525
Tumor
-0.1
958
Normal
-0.1
951
Tumor
-0.1
983
Tumor
-0.1
862
Normal
-0.1
146
Normal
-0.1
364
Normal
-0.1
925
Tumor
-0.1
196
Normal
-0.1
126
Normal
-0.1
864
Normal
-0.1
366
Normal
-0.1
1022
Normal
-0.1
738
Normal
-0.1
491
Tumor
-0.1
452
Normal
-0.1
964
Normal
-0.1
813
Tumor
-0.1
456
Normal
-0.1
428
Normal
-0.1
415
Tumor
-0.1
516
Normal
-0.1
284
Normal
-0.1
432
Normal
-0.1
786
Normal
-0.1
868
Normal
-0.1
464
Normal
-0.1
966
Normal
-0.1
391
Tumor
-0.1
466
Normal
-0.1
352
Normal
-0.1
468
Normal
-0.1
636
Normal
-0.2
866
Normal
-0.2
461
Tumor
-0.2
297
Tumor
-0.2
873
Tumor
-0.2
884
Normal
-0.2
628
Normal
-0.2
356
Normal
-0.2
354
Normal
-0.2
1032
Normal
-0.2
388
Normal
-0.2
232
Normal
-0.2
145
Tumor
-0.2
331
Tumor
-0.2
1027
Tumor
-0.2
513
Tumor
-0.2
526
Normal
-0.2
627
Tumor
-0.2
385
Tumor
-0.2
978
Normal
-0.2
715
Tumor
-0.2
368
Normal
-0.2
685
Tumor
-0.2
258
Normal
-0.2
463
Tumor
-0.2
474
Normal
-0.2
383
Tumor
-0.2
365
Tumor
-0.2
416
Normal
-0.2
386
Normal
-0.2
815
Tumor
-0.2
231
Tumor
-0.2
214
Normal
-0.2
218
Normal
-0.3
136
Normal
-0.3
341
Tumor
-0.3
814
Normal
-0.3
394
Normal
-0.3
857
Tumor
-0.3
328
Normal
-0.3
573
Tumor
-0.3
641
Tumor
-0.3
362
Normal
-0.3
913
Tumor
-0.3
671
Tumor
-0.3
351
Tumor
-0.3
272
Normal
-0.3
217
Tumor
-0.3
327
Tumor
-0.3
191
Tumor
-0.3
413
Tumor
-0.3
262
Normal
-0.3
537
Tumor
-0.3
851
Tumor
-0.3
481
Tumor
-0.3
358
Normal
-0.3
396
Normal
-0.3
467
Tumor
-0.4
257
Tumor
-0.4
261
Tumor
-0.4
557
Tumor
-0.4
267
Tumor
-0.4
514
Normal
-0.4
222
Normal
-0.4
171
Tumor
-0.4
724
Normal
-0.4
283
Tumor
-0.4
755
Tumor
-0.4
1041
Tumor
-0.6
661
Tumor
-0.7
213
Tumor
-0.8
195
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
