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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SAR1B is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
58.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
222.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
205.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
194.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
176.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
166.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
163.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
163.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
160.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
151.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
142.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
141.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
136.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
132.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
130.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
130.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
128.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
126.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
124.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
121.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
120.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
119.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
118.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
116.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
115.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
113.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
112.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
110.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
110.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
109.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
108.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
108.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
106.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
106.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
105.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
104.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
103.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
103.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
102.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
101.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
101.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
100.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
99.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
99.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
99.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
98.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
98.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
97.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
97.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
97.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
96.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
96.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
96.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
96.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
95.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
95.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
94.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
93.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
93.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
92.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
92.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
92.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
91.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
91.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
91.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
91.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
90.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
89.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
89.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
89.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
88.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
88.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
87.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
85.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
85.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
85.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
84.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
84.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
83.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
83.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
83.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
82.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
82.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
82.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
81.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
81.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
81.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
81.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
80.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
79.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
79.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
79.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
79.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
77.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
76.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
76.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
76.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
75.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
75.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
75.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
75.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
75.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
74.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
74.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
74.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
74.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
73.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
73.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
72.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
72.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
71.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
71.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
71.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
70.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
70.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
70.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
69.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
68.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
67.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
67.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
67.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
66.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
66.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
66.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
66.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
65.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
65.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
65.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
64.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
64.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
63.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
63.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
63.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
63.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
63.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
62.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
62.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
62.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
61.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
61.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
61.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
61.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
61.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
61.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
61.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
60.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
60.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
60.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
60.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
60.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
59.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
59.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
59.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
59.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
59.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
59.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
58.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
58.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
57.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
57.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
57.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
57.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
56.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
56.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
56.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
56.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
56.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
56.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
55.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
55.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
55.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
55.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
55.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
54.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
54.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
54.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
54.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
53.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
53.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
53.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
53.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
53.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
53.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
52.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
52.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
52.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
52.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
52.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
52.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
51.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
51.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
51.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
51.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
51.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
51.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
51.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
51.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
51.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
51.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
51.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
50.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
50.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
49.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
49.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
48.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
48.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
48.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
48.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
47.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
47.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
47.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
47.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
47.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
47.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
46.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
46.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
46.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
46.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
46.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
45.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
45.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
44.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
44.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
44.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
43.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
43.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
43.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
43.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
43.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
42.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
41.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
41.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
41.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
41.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
41.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
41.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
41.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
41.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
41.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
40.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
40.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
40.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
40.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
39.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
39.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
39.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
38.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
38.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
38.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
38.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
37.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
37.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
37.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
36.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
36.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
36.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
36.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
35.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
35.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
35.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
34.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
34.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
34.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
34.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
33.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
32.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
32.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
32.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
32.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
32.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
32.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
32.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
32.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
32.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
31.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
31.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
31.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
31.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
31.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
31.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
31.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
30.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
30.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
30.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
30.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
29.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
29.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
29.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
29.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
29.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
28.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
28.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
28.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
28.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
27.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
27.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
27.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
27.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
27.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
27.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
26.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
26.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
26.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
26.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
25.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
25.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
25.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
25.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
24.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
24.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
23.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
23.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
23.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
23.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
23.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
23.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
22.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
22.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
22.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
22.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
21.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
21.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
21.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
21.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
20.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
19.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
19.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
19.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
19.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
18.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
18.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
17.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
17.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
17.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
16.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
16.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
16.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
15.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
15.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
14.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
14.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
14.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
14.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
14.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
14.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
14.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
13.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
12.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
11.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
9.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
9.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
8.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
8.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
7.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
7.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
6.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
5.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
4.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SAR1B is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
22.9
Number of samples
231
Samples
Sample
Description
TPM
DO45099
0 years, male, NA, stage:3, alive, 1590 days
87.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
77.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
54.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
51.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
48.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
46.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
46.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
46.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
42.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
42.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
41.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
41.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
40.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
40.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
39.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
38.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
38.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
38.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
38.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
38.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
37.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
37.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
37.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
37.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
36.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
36.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
36.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
35.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
35.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
35.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
34.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
34.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
34.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
33.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
33.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
33.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
33.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
33.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
32.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
32.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
32.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
32.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
31.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
31.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
31.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
31.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
31.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
31.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
30.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
30.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
30.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
30.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
30.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
29.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
29.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
29.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
29.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
29.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
29.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
29.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
28.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
28.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
28.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
28.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
28.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
27.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
27.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
27.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
27.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
27.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
27.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
26.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
26.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
26.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
26.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
26.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
26.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
26.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
26.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
26.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
26.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
25.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
25.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
25.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
25.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
25.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
25.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
24.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
24.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
24.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
24.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
24.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
24.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
24.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
24.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
24.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
24.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
23.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
23.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
23.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
23.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
23.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
22.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
22.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
22.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
22.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
22.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
22.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
22.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
22.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
22.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
22.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
21.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
21.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
21.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
21.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
21.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
21.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
21.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
21.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
21.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
21.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
20.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
20.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
20.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
20.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
20.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
20.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
20.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
20.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
19.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
19.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
19.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
19.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
18.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
18.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
18.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
18.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
18.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
18.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
18.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
18.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
18.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
18.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
17.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
17.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
17.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
17.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
17.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
17.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
17.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
17.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
17.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
17.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
17.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
16.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
16.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
16.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
16.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
16.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
16.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
16.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
16.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
16.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
15.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
15.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
15.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
15.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
15.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
15.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
15.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
15.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
15.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
15.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
15.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
15.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
14.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
14.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
14.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
14.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
14.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
14.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
13.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
13.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
13.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
13.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
13.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
12.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
12.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
12.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
12.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
12.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
12.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
12.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
12.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
11.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
11.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
11.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
11.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
11.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
11.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
11.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
10.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
10.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
10.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
10.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
10.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
10.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
10.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
10.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
9.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
9.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
9.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
8.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
8.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
8.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
8.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
8.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
7.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
7.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
7.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
6.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
6.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
6.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
6.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
6.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
6.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
5.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
5.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
5.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
5.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1027
Tumor
1.0
353
Tumor
0.6
481
Tumor
0.6
857
Tumor
0.5
648
Normal
0.5
128
Normal
0.5
745
Tumor
0.5
426
Normal
0.5
436
Normal
0.5
435
Tumor
0.5
111
Normal
0.4
196
Normal
0.4
222
Normal
0.4
132
Normal
0.4
615
Tumor
0.4
1046
Normal
0.4
147
Tumor
0.4
616
Normal
0.4
466
Normal
0.4
452
Normal
0.4
868
Normal
0.4
392
Normal
0.4
414
Normal
0.4
698
Normal
0.4
742
Normal
0.4
388
Normal
0.4
356
Normal
0.4
342
Normal
0.4
412
Normal
0.4
862
Normal
0.3
746
Normal
0.3
422
Normal
0.3
786
Normal
0.3
358
Normal
0.3
915
Tumor
0.3
714
Normal
0.3
314
Normal
0.3
148
Normal
0.3
568
Normal
0.3
428
Normal
0.3
328
Normal
0.3
424
Normal
0.3
636
Normal
0.3
723
Tumor
0.3
922
Normal
0.3
744
Normal
0.3
738
Normal
0.3
938
Normal
0.3
1022
Normal
0.3
824
Normal
0.3
488
Normal
0.3
462
Normal
0.3
464
Normal
0.3
172
Normal
0.3
286
Normal
0.3
114
Normal
0.3
368
Normal
0.3
468
Normal
0.3
376
Normal
0.3
258
Normal
0.3
944
Normal
0.3
728
Normal
0.3
866
Normal
0.3
354
Normal
0.3
572
Normal
0.3
954
Normal
0.2
162
Normal
0.2
914
Normal
0.2
1014
Normal
0.2
484
Normal
0.2
298
Normal
0.2
327
Tumor
0.2
912
Normal
0.2
278
Normal
0.2
394
Normal
0.2
664
Normal
0.2
257
Tumor
0.2
1032
Normal
0.2
618
Normal
0.2
332
Normal
0.2
432
Normal
0.2
212
Normal
0.2
534
Normal
0.2
526
Normal
0.2
448
Normal
0.2
571
Tumor
0.2
955
Tumor
0.2
816
Normal
0.2
926
Normal
0.2
867
Tumor
0.2
472
Normal
0.2
482
Normal
0.2
186
Normal
0.2
124
Normal
0.2
357
Tumor
0.2
142
Normal
0.2
1044
Normal
0.2
864
Normal
0.2
642
Normal
0.2
456
Normal
0.2
686
Normal
0.2
518
Normal
0.2
1026
Normal
0.2
446
Normal
0.2
964
Normal
0.2
362
Normal
0.2
564
Normal
0.2
882
Normal
0.2
465
Tumor
0.2
364
Normal
0.2
696
Normal
0.2
137
Tumor
0.2
416
Normal
0.2
228
Normal
0.2
514
Normal
0.2
662
Normal
0.1
716
Normal
0.1
666
Normal
0.1
396
Normal
0.1
924
Normal
0.1
756
Normal
0.1
546
Normal
0.1
952
Normal
0.1
858
Normal
0.1
968
Normal
0.1
1016
Normal
0.1
423
Tumor
0.1
214
Normal
0.1
878
Normal
0.1
232
Normal
0.1
628
Normal
0.1
223
Tumor
0.1
1028
Normal
0.1
978
Normal
0.1
1043
Tumor
0.1
778
Normal
0.1
918
Normal
0.1
366
Normal
0.1
1045
Tumor
0.1
635
Tumor
0.1
126
Normal
0.1
218
Normal
0.1
171
Tumor
0.1
352
Normal
0.1
136
Normal
0.1
341
Tumor
0.1
528
Normal
0.1
722
Normal
0.1
554
Normal
0.1
127
Tumor
0.1
494
Normal
0.1
977
Tumor
0.1
727
Tumor
0.1
818
Normal
0.1
956
Normal
0.1
138
Normal
0.1
513
Tumor
0.1
574
Normal
0.1
272
Normal
0.1
284
Normal
0.1
874
Normal
0.1
195
Tumor
0.1
884
Normal
0.1
982
Normal
0.0
976
Normal
0.0
451
Tumor
0.0
261
Tumor
0.0
627
Tumor
0.0
113
Tumor
0.0
777
Tumor
0.0
384
Normal
0.0
558
Normal
0.0
755
Tumor
0.0
911
Tumor
0.0
262
Normal
0.0
474
Normal
0.0
145
Tumor
0.0
672
Normal
0.0
344
Normal
0.0
873
Tumor
0.0
1013
Tumor
0.0
981
Tumor
0.0
161
Tumor
0.0
1042
Normal
0.0
191
Tumor
0.0
361
Tumor
0.0
188
Normal
0.0
966
Normal
0.0
187
Tumor
0.0
365
Tumor
0.0
523
Tumor
0.0
431
Tumor
0.0
852
Normal
0.0
984
Normal
0.0
224
Normal
0.0
953
Tumor
0.0
268
Normal
0.0
516
Normal
-0.1
515
Tumor
-0.1
557
Tumor
-0.1
958
Normal
-0.1
123
Tumor
-0.1
312
Normal
-0.1
386
Normal
-0.1
498
Normal
-0.1
617
Tumor
-0.1
863
Tumor
-0.1
785
Tumor
-0.1
916
Normal
-0.1
421
Tumor
-0.1
685
Tumor
-0.1
433
Tumor
-0.1
491
Tumor
-0.1
913
Tumor
-0.1
146
Normal
-0.1
277
Tumor
-0.1
478
Normal
-0.1
721
Tumor
-0.1
434
Normal
-0.1
411
Tumor
-0.1
415
Tumor
-0.2
851
Tumor
-0.2
713
Tumor
-0.2
647
Tumor
-0.2
467
Tumor
-0.2
443
Tumor
-0.2
1041
Tumor
-0.2
925
Tumor
-0.2
313
Tumor
-0.2
741
Tumor
-0.2
937
Tumor
-0.2
538
Normal
-0.2
492
Normal
-0.2
477
Tumor
-0.2
231
Tumor
-0.2
861
Tumor
-0.2
185
Tumor
-0.2
393
Tumor
-0.2
355
Tumor
-0.2
524
Normal
-0.2
444
Normal
-0.2
923
Tumor
-0.2
387
Tumor
-0.2
487
Tumor
-0.3
695
Tumor
-0.3
363
Tumor
-0.3
445
Tumor
-0.3
227
Tumor
-0.3
427
Tumor
-0.3
533
Tumor
-0.3
1021
Tumor
-0.3
267
Tumor
-0.3
471
Tumor
-0.3
213
Tumor
-0.3
483
Tumor
-0.3
391
Tumor
-0.3
641
Tumor
-0.3
553
Tumor
-0.3
865
Tumor
-0.3
665
Tumor
-0.3
221
Tumor
-0.3
527
Tumor
-0.3
963
Tumor
-0.3
563
Tumor
-0.4
567
Tumor
-0.4
192
Normal
-0.4
135
Tumor
-0.4
517
Tumor
-0.4
921
Tumor
-0.4
217
Tumor
-0.4
461
Tumor
-0.4
537
Tumor
-0.4
112
Tumor
-0.4
536
Normal
-0.4
141
Tumor
-0.4
724
Normal
-0.4
493
Tumor
-0.4
823
Tumor
-0.5
813
Tumor
-0.5
715
Tumor
-0.5
271
Tumor
-0.5
663
Tumor
-0.5
455
Tumor
-0.5
383
Tumor
-0.5
883
Tumor
-0.5
525
Tumor
-0.5
463
Tumor
-0.5
957
Tumor
-0.5
125
Tumor
-0.6
697
Tumor
-0.6
737
Tumor
-0.6
814
Normal
-0.6
413
Tumor
-0.6
1025
Tumor
-0.6
285
Tumor
-0.6
297
Tumor
-0.6
425
Tumor
-0.7
447
Tumor
-0.7
375
Tumor
-0.7
351
Tumor
-0.7
881
Tumor
-0.7
951
Tumor
-0.7
497
Tumor
-0.7
967
Tumor
-0.8
965
Tumor
-0.8
311
Tumor
-0.8
815
Tumor
-0.8
385
Tumor
-0.8
817
Tumor
-0.8
395
Tumor
-0.8
917
Tumor
-0.8
943
Tumor
-0.8
573
Tumor
-0.8
283
Tumor
-0.8
473
Tumor
-0.9
975
Tumor
-0.9
331
Tumor
-0.9
1031
Tumor
-0.9
877
Tumor
-0.9
211
Tumor
-0.9
983
Tumor
-0.9
343
Tumor
-1.0
1015
Tumor
-1.0
131
Tumor
-1.1
743
Tumor
-1.2
671
Tumor
-1.2
535
Tumor
-1.2
661
Tumor
-1.2
367
Tumor
-1.3
545
Tumor
-1.3
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
