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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SPARCL1 is potential prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
62.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
1411.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
955.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
953.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
863.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
800.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
789.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
671.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
670.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
646.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
504.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
500.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
402.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
388.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
376.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
360.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
353.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
335.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
318.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
313.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
306.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
294.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
291.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
266.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
263.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
262.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
231.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
215.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
203.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
182.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
181.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
175.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
167.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
159.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
153.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
150.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
146.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
122.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
117.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
108.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
88.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
83.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
80.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
79.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
79.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
78.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
73.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
71.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
71.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
70.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
68.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
67.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
67.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
67.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
66.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
66.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
65.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
64.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
63.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
62.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
62.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
62.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
61.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
60.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
60.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
55.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
55.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
54.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
52.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
52.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
52.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
51.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
51.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
50.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
50.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
48.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
45.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
44.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
44.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
43.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
43.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
43.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
43.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
42.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
42.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
41.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
41.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
41.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
40.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
39.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
39.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
39.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
39.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
38.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
38.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
38.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
38.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
38.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
37.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
37.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
36.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
35.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
35.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
35.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
34.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
34.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
34.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
34.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
34.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
33.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
33.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
32.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
32.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
32.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
32.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
32.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
31.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
30.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
30.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
30.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
30.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
30.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
29.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
29.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
29.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
29.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
29.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
29.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
27.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
27.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
26.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
26.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
26.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
25.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
25.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
25.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
25.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
25.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
25.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
25.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
25.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
24.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
24.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
24.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
24.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
24.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
24.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
23.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
23.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
23.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
23.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
23.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
23.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
22.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
22.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
22.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
22.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
22.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
21.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
21.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
21.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
21.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
21.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
21.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
21.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
20.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
20.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
20.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
20.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
19.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
19.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
19.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
19.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
19.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
19.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
19.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
19.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
19.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
18.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
18.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
18.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
18.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
18.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
18.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
18.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
18.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
18.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
18.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
18.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
18.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
18.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
17.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
17.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
17.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
17.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
17.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
17.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
17.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
16.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
16.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
16.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
16.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
16.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
16.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
16.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
15.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
15.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
15.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
15.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
15.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
15.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
15.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
15.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
15.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
15.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
14.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
14.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
14.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
14.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
14.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
14.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
14.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
14.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
14.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
14.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
14.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
14.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
14.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
13.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
13.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
13.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
13.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
13.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
13.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
13.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
12.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
12.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
12.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
12.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
12.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
12.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
12.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
11.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
10.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
10.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
10.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
10.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
10.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
10.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
10.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
10.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
10.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
10.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
9.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
9.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
9.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
9.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
9.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
9.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
9.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
9.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
9.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
9.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
9.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
9.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
9.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
9.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
9.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
9.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
9.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
8.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
8.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
8.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
8.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
8.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
8.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
8.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
8.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
8.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
8.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
8.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
8.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
8.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
8.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
8.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
8.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
8.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
8.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
7.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
7.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
7.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
7.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
7.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
7.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
7.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
7.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
7.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
7.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
6.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
6.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
6.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
6.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
6.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
6.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
6.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
6.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
6.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
6.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
6.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
6.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
5.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
5.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
5.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
5.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
5.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
5.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
5.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
5.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
5.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
5.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
4.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
4.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
4.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
4.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
4.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
4.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
3.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
3.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
3.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
3.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
2.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
2.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
2.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
2.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
2.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
2.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
1.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
1.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SPARCL1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
63.8
Number of samples
231
Samples
Sample
Description
TPM
DO23529
0 years, male, NA, stage:4, alive, 930 days
1043.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
997.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
902.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
681.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
468.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
452.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
401.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
376.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
355.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
292.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
281.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
279.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
279.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
237.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
221.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
216.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
204.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
187.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
177.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
158.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
156.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
148.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
145.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
145.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
134.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
129.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
113.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
106.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
102.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
98.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
97.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
97.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
94.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
92.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
91.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
86.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
84.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
82.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
79.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
74.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
73.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
72.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
70.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
68.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
66.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
65.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
61.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
59.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
58.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
57.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
55.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
54.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
54.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
52.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
50.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
49.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
48.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
47.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
46.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
46.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
46.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
45.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
45.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
45.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
44.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
44.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
44.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
43.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
43.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
42.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
42.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
40.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
40.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
40.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
39.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
39.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
38.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
37.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
37.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
36.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
35.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
35.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
35.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
34.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
34.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
33.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
33.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
32.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
32.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
32.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
32.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
31.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
31.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
31.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
30.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
30.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
30.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
29.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
29.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
29.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
28.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
28.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
27.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
27.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
27.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
27.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
27.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
26.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
26.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
25.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
25.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
25.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
25.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
25.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
24.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
24.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
23.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
23.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
23.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
22.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
22.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
22.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
22.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
22.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
21.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
21.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
20.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
20.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
20.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
19.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
19.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
19.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
18.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
18.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
17.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
17.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
17.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
17.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
17.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
17.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
17.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
16.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
16.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
16.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
16.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
16.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
15.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
15.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
15.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
15.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
15.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
14.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
14.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
14.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
14.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
14.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
14.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
14.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
14.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
14.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
13.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
13.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
13.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
13.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
13.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
12.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
12.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
12.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
12.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
12.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
12.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
12.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
11.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
11.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
10.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
10.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
10.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
10.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
10.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
10.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
10.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
9.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
9.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
9.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
9.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
9.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
9.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
8.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
8.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
8.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
7.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
7.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
7.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
7.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
6.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
6.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
6.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
6.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
6.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
6.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
6.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
6.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
5.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
4.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
4.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
4.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
4.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
4.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
4.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
4.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
3.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
3.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
2.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
2.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
2.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
2.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
2.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
2.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
2.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
2.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
1.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
1.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
1.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
1.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
1.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
0.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
0.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
877
Tumor
2.8
261
Tumor
2.6
1041
Tumor
2.4
715
Tumor
2.3
451
Tumor
2.0
741
Tumor
2.0
861
Tumor
1.9
911
Tumor
1.5
915
Tumor
1.5
192
Normal
1.4
671
Tumor
1.4
383
Tumor
1.2
665
Tumor
1.2
343
Tumor
1.2
981
Tumor
1.1
697
Tumor
1.1
977
Tumor
1.0
535
Tumor
0.9
517
Tumor
0.9
231
Tumor
0.9
743
Tumor
0.9
513
Tumor
0.8
297
Tumor
0.8
171
Tumor
0.8
123
Tumor
0.8
217
Tumor
0.8
1043
Tumor
0.7
863
Tumor
0.7
635
Tumor
0.7
444
Normal
0.7
137
Tumor
0.7
187
Tumor
0.7
221
Tumor
0.7
112
Tumor
0.6
131
Tumor
0.6
384
Normal
0.6
331
Tumor
0.6
523
Tumor
0.6
431
Tumor
0.6
724
Normal
0.6
553
Tumor
0.6
573
Tumor
0.5
125
Tumor
0.5
393
Tumor
0.5
491
Tumor
0.5
627
Tumor
0.5
191
Tumor
0.5
342
Normal
0.5
957
Tumor
0.5
227
Tumor
0.5
311
Tumor
0.5
641
Tumor
0.5
1015
Tumor
0.5
141
Tumor
0.5
647
Tumor
0.5
967
Tumor
0.5
113
Tumor
0.4
672
Normal
0.4
536
Normal
0.4
745
Tumor
0.4
615
Tumor
0.4
1027
Tumor
0.4
395
Tumor
0.4
447
Tumor
0.4
883
Tumor
0.4
267
Tumor
0.4
213
Tumor
0.4
286
Normal
0.4
1031
Tumor
0.4
386
Normal
0.4
443
Tumor
0.4
1025
Tumor
0.4
1042
Normal
0.4
354
Normal
0.3
358
Normal
0.3
713
Tumor
0.3
527
Tumor
0.3
571
Tumor
0.3
391
Tumor
0.3
685
Tumor
0.3
916
Normal
0.3
1045
Tumor
0.3
445
Tumor
0.3
161
Tumor
0.3
228
Normal
0.3
563
Tumor
0.3
695
Tumor
0.3
814
Normal
0.3
262
Normal
0.3
572
Normal
0.3
813
Tumor
0.3
212
Normal
0.2
823
Tumor
0.2
557
Tumor
0.2
545
Tumor
0.2
492
Normal
0.2
465
Tumor
0.2
982
Normal
0.2
727
Tumor
0.2
816
Normal
0.2
127
Tumor
0.2
567
Tumor
0.2
851
Tumor
0.2
353
Tumor
0.2
327
Tumor
0.2
344
Normal
0.2
195
Tumor
0.2
185
Tumor
0.2
538
Normal
0.2
777
Tumor
0.2
923
Tumor
0.2
483
Tumor
0.2
487
Tumor
0.2
471
Tumor
0.2
498
Normal
0.2
917
Tumor
0.1
574
Normal
0.1
268
Normal
0.1
411
Tumor
0.1
455
Tumor
0.1
965
Tumor
0.1
1022
Normal
0.1
365
Tumor
0.1
818
Normal
0.1
285
Tumor
0.1
963
Tumor
0.1
744
Normal
0.1
516
Normal
0.1
277
Tumor
0.1
858
Normal
0.1
852
Normal
0.1
824
Normal
0.1
662
Normal
0.1
568
Normal
0.1
958
Normal
0.1
786
Normal
0.1
1032
Normal
0.1
375
Tumor
0.1
394
Normal
0.1
488
Normal
0.0
862
Normal
0.0
258
Normal
0.0
352
Normal
0.0
341
Tumor
0.0
636
Normal
0.0
484
Normal
0.0
666
Normal
0.0
524
Normal
0.0
515
Tumor
0.0
355
Tumor
0.0
617
Tumor
0.0
514
Normal
0.0
146
Normal
0.0
664
Normal
0.0
921
Tumor
0.0
363
Tumor
0.0
868
Normal
0.0
232
Normal
0.0
755
Tumor
N/A
364
Normal
0.0
463
Tumor
0.0
147
Tumor
0.0
558
Normal
0.0
564
Normal
0.0
975
Tumor
0.0
494
Normal
0.0
478
Normal
0.0
385
Tumor
0.0
874
Normal
0.0
984
Normal
0.0
884
Normal
0.0
392
Normal
-0.1
452
Normal
-0.1
737
Tumor
-0.1
145
Tumor
-0.1
388
Normal
-0.1
866
Normal
-0.1
361
Tumor
-0.1
642
Normal
-0.1
864
Normal
-0.1
472
Normal
-0.1
416
Normal
-0.1
473
Tumor
-0.1
464
Normal
-0.1
218
Normal
-0.1
1026
Normal
-0.1
396
Normal
-0.1
722
Normal
-0.1
785
Tumor
-0.1
746
Normal
-0.1
148
Normal
-0.1
968
Normal
-0.1
648
Normal
-0.1
188
Normal
-0.1
528
Normal
-0.1
756
Normal
-0.1
474
Normal
-0.1
742
Normal
-0.1
925
Tumor
-0.1
415
Tumor
-0.1
815
Tumor
-0.1
924
Normal
-0.1
272
Normal
-0.2
493
Tumor
-0.2
357
Tumor
-0.2
663
Tumor
-0.2
456
Normal
-0.2
432
Normal
-0.2
976
Normal
-0.2
412
Normal
-0.2
918
Normal
-0.2
367
Tumor
-0.2
387
Tumor
-0.2
857
Tumor
-0.2
481
Tumor
-0.2
257
Tumor
-0.2
477
Tumor
-0.2
1021
Tumor
-0.2
628
Normal
-0.2
1028
Normal
-0.2
328
Normal
-0.2
283
Tumor
-0.2
271
Tumor
-0.3
448
Normal
-0.3
433
Tumor
-0.3
434
Normal
-0.3
351
Tumor
-0.3
738
Normal
-0.3
126
Normal
-0.3
964
Normal
-0.3
312
Normal
-0.3
186
Normal
-0.3
978
Normal
-0.3
497
Tumor
-0.3
313
Tumor
-0.3
356
Normal
-0.3
526
Normal
-0.3
728
Normal
-0.3
1014
Normal
-0.3
214
Normal
-0.3
926
Normal
-0.3
723
Tumor
-0.3
224
Normal
-0.3
518
Normal
-0.3
554
Normal
-0.3
211
Tumor
-0.3
867
Tumor
-0.3
546
Normal
-0.4
362
Normal
-0.4
482
Normal
-0.4
466
Normal
-0.4
284
Normal
-0.4
1016
Normal
-0.4
138
Normal
-0.4
778
Normal
-0.4
696
Normal
-0.4
468
Normal
-0.4
223
Tumor
-0.4
618
Normal
-0.4
878
Normal
-0.4
714
Normal
-0.4
913
Tumor
-0.4
1013
Tumor
-0.4
461
Tumor
-0.4
298
Normal
-0.5
124
Normal
-0.5
446
Normal
-0.5
966
Normal
-0.5
1046
Normal
-0.5
616
Normal
-0.5
1044
Normal
-0.5
435
Tumor
-0.5
162
Normal
-0.5
817
Tumor
-0.5
922
Normal
-0.5
436
Normal
-0.5
172
Normal
-0.5
912
Normal
-0.5
462
Normal
-0.5
686
Normal
-0.6
716
Normal
-0.6
537
Tumor
-0.6
882
Normal
-0.6
278
Normal
-0.6
534
Normal
-0.6
873
Tumor
-0.6
467
Tumor
-0.6
698
Normal
-0.6
222
Normal
-0.6
366
Normal
-0.7
865
Tumor
-0.7
914
Normal
-0.7
533
Tumor
-0.8
661
Tumor
-0.8
721
Tumor
-0.8
135
Tumor
-0.8
142
Normal
-0.8
196
Normal
-0.8
368
Normal
-0.8
376
Normal
-0.9
314
Normal
-0.9
136
Normal
-0.9
881
Tumor
-0.9
525
Tumor
-1.0
132
Normal
-1.0
111
Normal
-1.0
983
Tumor
-1.0
332
Normal
-1.0
114
Normal
-1.1
128
Normal
-1.3
937
Tumor
N/A
938
Normal
N/A
943
Tumor
N/A
944
Normal
N/A
951
Tumor
N/A
952
Normal
N/A
953
Tumor
N/A
954
Normal
N/A
955
Tumor
N/A
956
Normal
N/A
413
Tumor
N/A
414
Normal
N/A
421
Tumor
N/A
422
Normal
N/A
423
Tumor
N/A
424
Normal
N/A
425
Tumor
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
