MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:44.9 nTPM
HPA Brain:125.5 nTPM
GTEx:44.9 nTPM
FANTOM5:102.7 Scaled Tags Per Million
Pig:34.9 nTPM
Mouse:18.1 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 125.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 85.2
1833 Male, age 53, unknown 112.7
1870 Female, age 42, unknown 105.8
1830 Male, age 51, unknown 104.7
2019 Male, age 18, unknown 99.1
2828 Female, age 72, unknown 91.8
1827 Male, age 72, unknown 83.8
2411 Female, age 72, unknown 74.3
2666 Male, age 74, left hemisphere 62.4
2219 Male, age 76, both hemispheres 60.5
2586 Male, age 75, left hemisphere 57.1
Dorsal raphe nucleus
nTPM: 96.8
2016 Female, age 72, unknown 141.0
2298 Female, age 72, unknown 102.1
1828 Male, age 53, unknown 97.6
2750 Male, age 76, both hemispheres 75.1
2047 Male, age 72, unknown 68.2
Inferior colliculus
nTPM: 90.4
2849 Male, age 72, unknown 99.7
1848 Female, age 42, unknown 96.5
2097 Female, age 72, unknown 87.7
1890 Male, age 53, unknown 77.7
Median raphe nucleus
nTPM: 66.4
2220 Male, age 76, midline 66.4
Periaquaductal grey, anterior
nTPM: 85.5
2502 Female, age 75, unknown 97.4
1947 Male, age 18, unknown 86.1
1795 Male, age 51, unknown 73.0
Periaquaductal grey, dorsal
nTPM: 109.8
2850 Male, age 76, both hemispheres 180.9
1840 Male, age 53, unknown 87.7
1831 Male, age 72, unknown 86.6
2464 Female, age 72, unknown 84.0
Periaquaductal grey, lateral
nTPM: 125.5
2272 Male, age 74, both hemispheres 150.5
2140 Male, age 76, both hemispheres 134.8
2053 Male, age 18, unknown 91.3
Pretectal area
nTPM: 88.4
2273 Male, age 74, both hemispheres 134.6
2224 Female, age 72, unknown 105.7
2667 Female, age 75, unknown 102.2
1815 Male, age 53, unknown 94.4
1817 Female, age 42, unknown 94.4
2316 Male, age 76, right hemisphere 82.3
2825 Male, age 18, unknown 82.0
1944 Female, age 72, unknown 78.9
2007 Male, age 72, unknown 69.2
1816 Male, age 51, unknown 65.6
2407 Male, age 75, both hemispheres 62.8
Red nucleus
nTPM: 96.7
1821 Female, age 72, unknown 120.2
1904 Male, age 53, unknown 118.6
1865 Male, age 51, unknown 118.4
1954 Female, age 42, unknown 116.7
2503 Female, age 72, unknown 104.4
2227 Male, age 72, unknown 100.7
2823 Male, age 76, right hemisphere 99.4
2769 Male, age 72, unknown 98.3
2785 Male, age 18, unknown 96.7
2725 Female, age 75, unknown 81.7
2588 Male, age 74, left hemisphere 59.0
2584 Male, age 75, left hemisphere 46.2
Substantia nigra
nTPM: 78.5
2699 Male, age 18, unknown 107.1
2409 Female, age 72, unknown 95.0
1889 Female, age 72, unknown 86.1
1851 Male, age 51, unknown 82.3
2665 Male, age 74, both hemispheres 80.3
2241 Male, age 72, unknown 75.1
2590 Female, age 75, unknown 70.3
1916 Female, age 42, unknown 69.5
1941 Male, age 53, unknown 66.0
2583 Male, age 75, right hemisphere 53.2
Superior colliculus
nTPM: 94.6
1995 Male, age 72, unknown 151.0
1913 Female, age 42, unknown 134.7
2587 Male, age 74, left hemisphere 101.5
1895 Male, age 76, right hemisphere 92.1
1839 Male, age 51, unknown 91.6
2668 Female, age 75, unknown 84.5
1796 Male, age 53, unknown 75.2
2087 Female, age 72, unknown 74.7
2261 Male, age 18, unknown 74.2
2664 Male, age 75, both hemispheres 66.4
Ventral tegmental area
nTPM: 76.6
2410 Female, age 72, unknown 99.0
2218 Male, age 76, both hemispheres 78.7
1915 Female, age 42, unknown 74.9
2021 Male, age 53, unknown 74.9
1942 Male, age 51, unknown 67.7
2223 Female, age 72, unknown 64.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 44.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 44.9
Samples: 139

Max nTPM: 109.2
Min nTPM: 11.8
Std nTPM: 16.6
Median nTPM: 41.0
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 109.2
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 102.6
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 97.8
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 92.5
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 87.6
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 77.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 74.5
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 70.8
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 70.5
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 70.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 70.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 102.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 102.7
FF:10158-103A5 76 years, female 102.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 34.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 34.9
Samples: 4

Max nTPM: 44.5
Min nTPM: 25.0
Sample A Female 28.0
Sample B Female 42.0
Sample C Male 25.0
Sample D Male 44.5
Midbrain
nTPM: 27.2
Samples: 4

Max nTPM: 35.6
Min nTPM: 18.8
Sample A Female 35.6
Sample B Female 33.8
Sample C Male 20.5
Sample D Male 18.8
Periaqueductal gray
nTPM: 33.1
Samples: 3

Max nTPM: 37.7
Min nTPM: 30.6
Sample B Female 31.0
Sample C Male 30.6
Sample D Male 37.7
Superior colliculi
nTPM: 29.8
Samples: 4

Max nTPM: 34.5
Min nTPM: 23.7
Sample A Female 31.9
Sample B Female 34.5
Sample C Male 23.7
Sample D Male 29.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 18.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 18.1
Samples: 4

Max nTPM: 18.8
Min nTPM: 17.5
Sample A Male 17.7
Sample B Male 17.5
Sample C Female 18.4
Sample D Female 18.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
68080674 Antisense, RP_040929_01_D04, Mouse strain C57BL/6J (56 days, male) 0.1

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