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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Medium
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
236.0
nTPM
HPA Brain:
215.2
nTPM
GTEx:
236.0
nTPM
FANTOM5:
55.7
Scaled Tags Per Million
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA052623
Glial cells
Not detected
Neuronal cells
Medium
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
215.2
Sample id
Sample description
nTPM
Hippocampus nTPM: 179.5
2529
Female, age 94, left hemisphere
230.3
1898
Male, age 80, left hemisphere
222.2
2621
Female, age 67, right hemisphere
173.8
2148
Female, age 91, left hemisphere
167.8
1911
Female, age 85, right hemisphere
145.6
1855
Male, age 76, left hemisphere
137.1
Dentate gyrus nTPM: 179.3
2530
Female, age 94, left hemisphere
223.2
2010
Male, age 76, both hemispheres
184.2
2531
Female, age 67, both hemispheres
181.3
1927
Female, age 91, both hemispheres
169.7
2246
Female, age 85, both hemispheres
161.6
2528
Male, age 74, both hemispheres
155.7
Entorhinal gyrus nTPM: 202.5
2764
Male, age 80, right hemisphere
249.8
1787
Male, age 76, left hemisphere
201.2
2117
Female, age 91, right hemisphere
197.3
2686
Male, age 75, right hemisphere
193.0
1938
Female, age 85, left hemisphere
189.1
2613
Female, age 94, left hemisphere
184.8
Hippocampus, CA1 nTPM: 177.5
2749
Male, age 80, left hemisphere
220.7
2082
Female, age 91, right hemisphere
186.7
2527
Male, age 74, both hemispheres
180.1
2045
Male, age 76, both hemispheres
157.9
1873
Female, age 85, both hemispheres
142.3
Hippocampus, CA2 nTPM: 179.1
1963
Male, age 80, left hemisphere
202.1
2249
Male, age 74, both hemispheres
181.8
1940
Female, age 85, left hemisphere
176.3
2113
Female, age 91, right hemisphere
172.6
2437
Female, age 94, left hemisphere
170.8
1892
Male, age 76, both hemispheres
170.7
Hippocampus, CA3 nTPM: 167.6
2861
Female, age 67, both hemispheres
206.8
2436
Male, age 74, both hemispheres
174.5
1867
Male, age 76, both hemispheres
168.0
2137
Male, age 80, left hemisphere
162.3
1891
Female, age 85, both hemispheres
147.9
2620
Female, age 94, left hemisphere
145.9
Parahippocampal cortex nTPM: 190.8
2245
Female, age 91, both hemispheres
225.6
2250
Female, age 67, right hemisphere
216.8
2622
Female, age 67, right hemisphere
204.6
1933
Female, age 85, both hemispheres
199.6
1990
Female, age 91, right hemisphere
195.0
1850
Male, age 80, both hemispheres
194.7
2532
Female, age 72, left hemisphere
190.8
2018
Male, age 76, both hemispheres
185.7
2692
Male, age 74, both hemispheres
149.2
2693
Female, age 94, both hemispheres
145.7
Perirhinal gyrus nTPM: 215.2
1794
Male, age 80, right hemisphere
258.4
1847
Female, age 91, left hemisphere
232.2
1841
Female, age 85, right hemisphere
208.4
2521
Female, age 94, right hemisphere
205.4
2848
Male, age 76, right hemisphere
171.9
Subiculum nTPM: 169.9
1977
Female, age 85, both hemispheres
209.9
2619
Male, age 74, both hemispheres
190.9
1901
Male, age 80, both hemispheres
178.0
2042
Male, age 76, both hemispheres
152.1
2438
Female, age 94, left hemisphere
148.3
2729
Female, age 91, right hemisphere
139.9
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
236.0
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 236.0
Samples: 197
Max nTPM: 818.2
Min nTPM: 61.4
Std nTPM: 91.6
Median nTPM: 217.2
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
818.2
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
630.9
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
588.1
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
540.0
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
521.7
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
467.6
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
426.9
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
403.3
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
398.8
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
385.0
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
361.2
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
359.0
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
353.6
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
346.0
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
345.9
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
339.1
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
336.9
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
333.1
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
331.4
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
329.1
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
322.6
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
316.6
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
313.6
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
308.3
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
304.9
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
303.7
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
302.5
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
298.9
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
298.6
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
298.4
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
298.2
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
297.9
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
297.0
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
295.0
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
294.8
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
293.2
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
292.6
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
291.7
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
290.4
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
287.2
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
287.1
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
286.0
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
285.5
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
285.4
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
284.7
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
284.0
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
283.2
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
281.1
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
279.7
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
274.8
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
273.4
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
272.1
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
270.4
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
268.7
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
268.6
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
268.4
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
267.5
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
263.9
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
263.5
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
263.3
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
261.8
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
260.8
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
260.7
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
258.3
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
256.2
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
254.8
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
252.0
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
250.7
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
249.0
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
248.5
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
247.5
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
244.2
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
244.0
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
242.4
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
240.1
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
239.5
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
238.4
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
232.8
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
231.8
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
231.6
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
231.0
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
230.9
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
230.5
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
229.7
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
229.3
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
228.6
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
228.0
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
227.9
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
226.9
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
224.0
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
223.0
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
221.9
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
221.7
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
221.3
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
221.2
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
220.2
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
217.6
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
217.2
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
217.2
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
217.1
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
216.7
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
216.4
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
216.3
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
214.8
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
213.3
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
212.7
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
210.0
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
209.9
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
209.2
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
208.5
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
208.2
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
207.9
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
206.7
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
204.8
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
204.6
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
204.5
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
204.3
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
204.0
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
203.0
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
201.9
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
201.1
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
201.0
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
199.8
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
198.6
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
197.3
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
196.7
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
194.0
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
193.5
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
192.9
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
192.6
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
192.4
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
191.9
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
191.3
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
190.8
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
190.5
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
189.0
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
188.8
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
188.6
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
187.3
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
186.5
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
185.7
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
183.4
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
183.0
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
182.5
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
181.1
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
180.0
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
179.2
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
179.2
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
179.1
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
178.7
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
175.3
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
175.1
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
174.9
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
174.5
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
173.9
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
173.8
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
173.7
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
172.8
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
171.5
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
170.3
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
168.9
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
168.6
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
168.3
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
166.5
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
166.2
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
163.6
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
161.9
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
161.5
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
161.2
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
160.8
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
160.7
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
159.9
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
159.2
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
158.9
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
157.5
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
152.2
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
150.9
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
150.2
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
150.1
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
149.2
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
148.5
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
146.7
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
142.7
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
141.0
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
139.1
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
137.7
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
135.4
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
135.2
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
133.8
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
133.2
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
132.3
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
129.7
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
128.5
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
106.6
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
104.2
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
83.5
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
61.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.