We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TWF1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
23.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
101.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
93.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
78.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
77.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
77.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
69.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
62.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
57.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
52.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
51.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
49.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
48.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
48.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
47.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
46.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
45.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
45.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
45.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
43.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
42.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
42.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
41.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
41.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
40.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
40.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
40.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
39.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
38.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
38.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
37.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
37.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
37.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
37.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
37.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
36.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
36.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
36.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
36.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
35.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
35.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
34.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
34.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
34.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
34.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
34.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
33.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
33.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
33.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
33.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
33.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
33.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
33.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
32.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
32.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
32.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
32.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
32.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
32.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
32.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
32.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
32.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
32.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
32.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
31.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
31.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
31.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
31.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
31.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
31.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
31.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
31.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
31.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
31.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
31.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
31.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
31.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
30.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
30.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
30.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
30.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
30.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
30.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
30.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
30.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
29.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
29.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
29.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
29.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
29.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
29.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
29.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
29.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
29.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
29.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
28.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
28.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
28.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
28.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
28.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
28.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
28.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
27.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
27.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
27.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
27.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
27.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
27.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
27.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
27.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
27.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
27.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
27.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
26.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
26.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
26.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
26.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
26.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
26.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
26.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
26.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
26.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
26.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
26.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
26.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
26.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
26.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
26.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
25.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
25.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
25.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
25.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
25.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
25.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
24.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
24.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
24.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
24.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
24.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
24.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
24.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
24.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
23.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
23.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
23.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
23.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
23.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
23.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
23.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
23.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
23.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
23.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
23.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
23.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
23.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
23.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
23.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
23.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
22.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
22.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
22.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
22.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
22.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
22.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
22.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
21.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
21.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
21.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
21.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
21.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
21.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
21.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
21.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
21.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
21.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
21.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
21.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
21.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
21.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
21.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
21.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
21.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
20.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
20.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
20.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
20.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
20.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
20.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
20.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
20.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
20.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
20.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
20.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
20.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
20.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
20.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
20.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
20.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
20.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
20.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
20.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
20.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
20.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
20.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
19.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
19.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
19.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
19.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
19.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
19.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
19.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
19.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
19.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
18.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
18.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
18.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
18.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
18.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
18.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
18.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
18.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
18.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
18.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
17.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
17.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
17.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
17.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
17.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
17.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
17.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
17.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
17.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
17.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
17.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
17.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
17.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
17.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
17.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
17.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
17.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
17.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
17.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
17.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
17.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
17.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
16.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
16.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
16.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
16.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
16.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
16.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
16.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
16.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
16.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
16.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
16.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
16.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
16.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
16.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
16.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
16.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
15.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
15.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
15.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
15.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
15.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
15.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
15.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
15.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
15.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
15.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
15.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
14.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
14.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
14.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
14.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
14.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
14.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
14.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
14.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
14.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
14.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
14.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
14.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
14.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
14.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
14.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
14.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
14.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
13.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
13.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
13.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
13.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
13.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
13.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
13.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
13.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
13.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
13.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
13.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
13.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
13.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
12.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
12.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
12.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
12.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
12.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
12.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
12.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
12.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
12.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
12.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
12.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
12.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
11.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
11.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
11.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
11.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
11.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
11.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
11.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
11.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
10.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
10.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
10.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
10.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
10.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
10.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
10.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
9.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
9.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
9.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
9.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
8.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
8.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
8.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
8.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
8.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
8.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
7.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
7.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
7.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
7.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
6.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
6.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
6.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
5.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
5.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
5.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
5.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TWF1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
29.2
Number of samples
231
Samples
Sample
Description
TPM
DO45119
0 years, male, NA, stage:3, dead, 510 days
127.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
89.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
73.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
70.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
61.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
59.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
59.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
57.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
56.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
54.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
52.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
52.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
51.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
50.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
46.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
46.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
46.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
45.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
45.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
45.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
45.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
44.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
44.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
44.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
43.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
43.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
43.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
41.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
40.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
40.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
40.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
40.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
40.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
39.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
39.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
39.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
39.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
38.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
38.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
38.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
38.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
37.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
37.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
37.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
36.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
36.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
36.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
36.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
35.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
35.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
34.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
34.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
34.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
34.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
34.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
34.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
33.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
33.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
33.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
33.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
33.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
33.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
32.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
32.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
32.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
32.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
32.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
32.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
32.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
31.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
31.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
31.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
31.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
31.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
31.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
31.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
30.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
29.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
29.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
29.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
29.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
29.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
29.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
29.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
29.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
29.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
29.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
29.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
29.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
29.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
29.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
29.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
28.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
28.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
28.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
28.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
28.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
28.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
28.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
28.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
28.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
28.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
27.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
27.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
27.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
27.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
27.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
27.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
27.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
27.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
27.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
27.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
26.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
26.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
26.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
26.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
26.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
26.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
26.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
26.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
26.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
26.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
26.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
25.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
25.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
25.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
25.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
25.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
25.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
25.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
25.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
25.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
25.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
25.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
25.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
25.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
25.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
25.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
24.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
24.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
24.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
24.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
24.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
24.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
24.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
24.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
23.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
23.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
23.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
23.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
23.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
23.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
23.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
22.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
22.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
22.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
22.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
22.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
22.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
22.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
21.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
21.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
21.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
21.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
21.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
21.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
21.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
21.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
21.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
21.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
21.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
21.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
21.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
21.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
21.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
21.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
21.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
20.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
20.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
20.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
20.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
20.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
20.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
20.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
20.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
20.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
20.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
20.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
20.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
20.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
19.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
19.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
19.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
19.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
19.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
19.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
19.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
19.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
18.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
18.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
18.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
18.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
18.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
18.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
18.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
18.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
17.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
17.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
17.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
17.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
16.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
16.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
16.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
16.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
16.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
16.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
15.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
15.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
15.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
15.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
15.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
14.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
14.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
14.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
12.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
12.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
10.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
10.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
10.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
9.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
9.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
425
Tumor
0.9
745
Tumor
0.6
813
Tumor
0.6
527
Tumor
0.5
851
Tumor
0.5
737
Tumor
0.4
777
Tumor
0.4
943
Tumor
0.4
814
Normal
0.4
1027
Tumor
0.4
911
Tumor
0.3
127
Tumor
0.3
915
Tumor
0.3
147
Tumor
0.3
283
Tumor
0.3
785
Tumor
0.3
567
Tumor
0.3
937
Tumor
0.3
125
Tumor
0.3
917
Tumor
0.3
1013
Tumor
0.3
727
Tumor
0.3
617
Tumor
0.2
137
Tumor
0.2
513
Tumor
0.2
135
Tumor
0.2
443
Tumor
0.2
1045
Tumor
0.2
921
Tumor
0.2
112
Tumor
0.2
883
Tumor
0.2
1021
Tumor
0.2
863
Tumor
0.2
697
Tumor
0.2
171
Tumor
0.2
721
Tumor
0.2
257
Tumor
0.2
123
Tumor
0.2
977
Tumor
0.2
558
Normal
0.2
627
Tumor
0.2
327
Tumor
0.2
868
Normal
0.2
573
Tumor
0.2
481
Tumor
0.2
723
Tumor
0.2
1043
Tumor
0.2
528
Normal
0.2
755
Tumor
0.2
455
Tumor
0.2
647
Tumor
0.2
953
Tumor
0.2
641
Tumor
0.2
415
Tumor
0.1
635
Tumor
0.1
957
Tumor
0.1
738
Normal
0.1
451
Tumor
0.1
477
Tumor
0.1
713
Tumor
0.1
786
Normal
0.1
375
Tumor
0.1
518
Normal
0.1
954
Normal
0.1
983
Tumor
0.1
873
Tumor
0.1
967
Tumor
0.1
311
Tumor
0.1
862
Normal
0.1
1015
Tumor
0.1
313
Tumor
0.1
778
Normal
0.1
867
Tumor
0.1
515
Tumor
0.1
864
Normal
0.1
728
Normal
0.1
952
Normal
0.1
914
Normal
0.1
944
Normal
0.1
661
Tumor
0.1
615
Tumor
0.1
696
Normal
0.1
395
Tumor
0.1
474
Normal
0.1
742
Normal
0.1
1028
Normal
0.1
131
Tumor
0.1
538
Normal
0.1
537
Tumor
0.1
968
Normal
0.1
461
Tumor
0.1
524
Normal
0.1
616
Normal
0.1
874
Normal
0.1
463
Tumor
0.1
816
Normal
0.1
445
Tumor
0.1
756
Normal
0.1
746
Normal
0.0
231
Tumor
0.0
884
Normal
0.0
724
Normal
0.0
686
Normal
0.0
113
Tumor
0.0
492
Normal
0.0
642
Normal
0.0
963
Tumor
0.0
878
Normal
0.0
861
Tumor
0.0
478
Normal
0.0
483
Tumor
0.0
572
Normal
0.0
924
Normal
0.0
852
Normal
0.0
714
Normal
0.0
881
Tumor
0.0
421
Tumor
0.0
471
Tumor
0.0
285
Tumor
0.0
448
Normal
0.0
1025
Tumor
0.0
1031
Tumor
0.0
574
Normal
0.0
433
Tumor
0.0
554
Normal
0.0
1044
Normal
0.0
497
Tumor
0.0
665
Tumor
0.0
912
Normal
0.0
126
Normal
0.0
212
Normal
0.0
472
Normal
0.0
628
Normal
0.0
341
Tumor
0.0
557
Tumor
0.0
484
Normal
0.0
536
Normal
0.0
462
Normal
0.0
367
Tumor
0.0
444
Normal
0.0
866
Normal
0.0
1041
Tumor
0.0
648
Normal
0.0
261
Tumor
0.0
918
Normal
0.0
411
Tumor
0.0
865
Tumor
0.0
716
Normal
0.0
636
Normal
0.0
975
Tumor
0.0
387
Tumor
0.0
195
Tumor
0.0
966
Normal
0.0
916
Normal
0.0
1046
Normal
0.0
498
Normal
0.0
546
Normal
0.0
535
Tumor
0.0
422
Normal
0.0
494
Normal
0.0
434
Normal
0.0
435
Tumor
0.0
922
Normal
0.0
618
Normal
0.0
951
Tumor
0.0
715
Tumor
0.0
436
Normal
0.0
1026
Normal
0.0
465
Tumor
0.0
526
Normal
0.0
925
Tumor
0.0
361
Tumor
0.0
824
Normal
0.0
666
Normal
0.0
722
Normal
0.0
815
Tumor
0.0
553
Tumor
0.0
913
Tumor
0.0
938
Normal
0.0
466
Normal
0.0
488
Normal
0.0
926
Normal
0.0
284
Normal
0.0
111
Normal
0.0
298
Normal
0.0
514
Normal
0.0
385
Tumor
0.0
564
Normal
0.0
534
Normal
0.0
128
Normal
0.0
571
Tumor
0.0
223
Tumor
0.0
1022
Normal
0.0
228
Normal
0.0
662
Normal
0.0
214
Normal
0.0
412
Normal
0.0
817
Tumor
0.0
858
Normal
0.0
516
Normal
0.0
955
Tumor
0.0
271
Tumor
-0.1
218
Normal
-0.1
365
Tumor
-0.1
468
Normal
-0.1
456
Normal
-0.1
217
Tumor
-0.1
525
Tumor
-0.1
568
Normal
-0.1
698
Normal
-0.1
744
Normal
-0.1
114
Normal
-0.1
823
Tumor
-0.1
482
Normal
-0.1
416
Normal
-0.1
976
Normal
-0.1
222
Normal
-0.1
424
Normal
-0.1
356
Normal
-0.1
286
Normal
-0.1
383
Tumor
-0.1
268
Normal
-0.1
664
Normal
-0.1
882
Normal
-0.1
493
Tumor
-0.1
545
Tumor
-0.1
487
Tumor
-0.1
344
Normal
-0.1
984
Normal
-0.1
196
Normal
-0.1
432
Normal
-0.1
187
Tumor
-0.1
447
Tumor
-0.1
142
Normal
-0.1
141
Tumor
-0.1
452
Normal
-0.1
956
Normal
-0.1
132
Normal
-0.1
297
Tumor
-0.1
185
Tumor
-0.1
172
Normal
-0.1
262
Normal
-0.1
685
Tumor
-0.1
278
Normal
-0.1
1016
Normal
-0.1
517
Tumor
-0.1
277
Tumor
-0.1
923
Tumor
-0.1
1032
Normal
-0.1
213
Tumor
-0.1
467
Tumor
-0.1
1014
Normal
-0.1
162
Normal
-0.1
978
Normal
-0.1
428
Normal
-0.1
148
Normal
-0.1
258
Normal
-0.1
386
Normal
-0.1
958
Normal
-0.1
191
Tumor
-0.1
224
Normal
-0.1
353
Tumor
-0.1
362
Normal
-0.1
136
Normal
-0.1
221
Tumor
-0.1
982
Normal
-0.1
426
Normal
-0.1
161
Tumor
-0.1
818
Normal
-0.1
741
Tumor
-0.1
232
Normal
-0.1
964
Normal
-0.1
431
Tumor
-0.1
533
Tumor
-0.1
312
Normal
-0.1
272
Normal
-0.1
124
Normal
-0.1
464
Normal
-0.1
188
Normal
-0.1
427
Tumor
-0.1
392
Normal
-0.2
1042
Normal
-0.2
364
Normal
-0.2
414
Normal
-0.2
368
Normal
-0.2
491
Tumor
-0.2
981
Tumor
-0.2
186
Normal
-0.2
357
Tumor
-0.2
145
Tumor
-0.2
358
Normal
-0.2
332
Normal
-0.2
328
Normal
-0.2
355
Tumor
-0.2
857
Tumor
-0.2
138
Normal
-0.2
446
Normal
-0.2
384
Normal
-0.2
672
Normal
-0.2
366
Normal
-0.2
394
Normal
-0.2
473
Tumor
-0.2
314
Normal
-0.2
396
Normal
-0.2
146
Normal
-0.2
352
Normal
-0.2
351
Tumor
-0.2
331
Tumor
-0.2
342
Normal
-0.2
391
Tumor
-0.2
965
Tumor
-0.2
413
Tumor
-0.3
663
Tumor
-0.3
388
Normal
-0.3
363
Tumor
-0.3
523
Tumor
-0.3
671
Tumor
-0.3
376
Normal
-0.3
211
Tumor
-0.3
354
Normal
-0.3
393
Tumor
-0.3
192
Normal
-0.3
563
Tumor
-0.3
267
Tumor
-0.3
227
Tumor
-0.3
423
Tumor
-0.3
743
Tumor
-0.4
695
Tumor
-0.4
343
Tumor
-0.4
877
Tumor
-0.4
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
