We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SEC24D is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
57.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
53.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
49.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
46.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
45.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
41.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
40.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
40.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
38.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
37.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
37.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
36.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
35.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
34.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
34.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
33.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
33.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
33.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
33.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
32.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
32.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
31.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
31.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
31.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
29.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
29.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
29.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
28.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
28.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
27.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
27.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
26.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
26.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
26.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
26.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
26.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
26.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
26.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
26.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
26.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
25.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
25.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
25.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
24.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
24.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
24.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
24.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
24.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
24.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
24.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
24.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
24.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
23.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
23.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
23.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
23.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
23.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
23.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
23.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
23.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
22.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
22.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
22.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
22.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
22.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
22.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
22.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
21.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
21.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
21.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
21.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
21.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
21.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
21.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
21.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
20.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
20.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
20.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
20.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
20.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
20.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
20.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
20.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
19.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
19.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
19.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
19.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
19.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
19.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
19.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
19.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
19.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
19.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
18.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
18.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
18.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
18.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
18.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
18.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
18.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
18.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
18.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
18.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
18.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
18.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
18.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
17.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
17.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
17.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
17.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
17.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
17.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
17.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
17.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
17.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
17.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
17.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
17.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
17.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
16.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
16.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
16.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
16.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
16.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
16.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
16.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
16.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
16.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
16.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
16.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
16.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
16.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
16.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
16.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
16.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
15.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
15.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
15.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
15.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
15.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
15.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
15.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
15.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
15.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
15.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
15.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
15.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
15.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
15.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
15.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
14.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
14.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
14.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
14.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
14.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
14.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
14.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
14.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
14.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
14.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
14.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
14.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
14.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
14.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
14.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
14.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
14.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
14.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
13.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
13.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
13.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
13.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
13.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
13.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
13.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
13.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
13.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
13.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
13.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
13.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
13.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
13.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
13.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
13.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
13.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
13.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
13.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
13.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
13.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
13.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
13.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
13.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
12.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
12.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
12.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
12.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
12.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
12.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
12.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
12.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
12.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
12.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
11.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
11.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
11.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
11.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
11.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
11.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
11.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
11.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
11.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
11.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
11.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
11.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
11.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
11.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
11.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
11.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
11.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
11.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
11.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
10.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
10.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
10.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
10.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
10.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
10.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
10.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
10.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
10.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
10.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
10.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
10.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
10.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
10.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
10.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
9.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
9.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
9.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
9.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
9.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
9.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
9.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
9.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
9.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
9.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
9.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
9.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
9.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
9.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
9.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
9.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
8.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
8.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
8.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
8.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
8.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
8.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
8.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
8.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
8.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
8.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
8.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
8.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
7.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
7.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
7.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
7.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
7.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
7.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
7.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
7.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
7.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
7.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
7.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
7.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
7.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
7.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
6.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
6.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
6.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
6.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
6.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
6.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
6.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
6.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
6.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
6.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
6.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
6.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
6.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
5.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
5.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
5.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
5.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
5.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
5.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
5.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
4.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
4.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
4.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
4.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
4.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
4.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
3.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
3.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
3.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
3.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
3.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
2.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
2.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
2.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SEC24D is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.9
Number of samples
231
Samples
Sample
Description
TPM
DO45155
0 years, male, NA, stage:2, alive, 2160 days
44.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
38.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
36.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
30.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
30.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
29.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
29.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
28.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
28.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
28.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
27.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
27.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
26.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
26.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
25.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
25.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
25.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
24.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
24.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
24.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
24.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
24.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
24.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
23.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
22.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
22.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
22.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
21.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
21.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
21.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
21.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
21.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
21.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
21.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
20.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
20.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
20.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
20.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
20.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
20.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
20.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
19.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
19.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
19.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
19.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
19.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
19.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
19.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
19.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
18.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
18.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
18.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
18.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
18.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
18.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
18.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
17.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
17.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
17.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
17.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
17.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
17.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
17.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
16.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
16.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
16.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
16.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
16.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
16.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
16.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
16.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
16.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
16.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
16.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
15.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
15.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
15.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
15.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
15.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
15.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
15.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
15.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
15.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
14.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
14.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
14.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
14.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
14.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
14.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
14.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
14.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
14.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
14.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
14.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
14.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
14.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
14.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
14.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
14.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
13.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
13.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
13.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
13.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
13.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
13.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
13.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
13.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
13.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
13.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
13.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
13.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
13.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
13.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
13.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
13.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
13.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
13.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
13.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
12.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
12.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
12.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
12.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
12.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
12.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
12.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
12.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
12.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
12.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
12.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
12.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
12.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
12.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
12.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
11.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
11.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
11.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
11.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
11.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
11.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
11.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
11.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
11.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
11.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
11.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
10.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
10.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
10.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
10.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
10.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
10.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
10.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
10.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
10.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
10.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
10.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
10.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
10.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
10.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
10.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
10.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
10.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
10.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
9.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
9.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
9.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
9.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
9.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
9.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
9.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
9.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
9.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
9.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
9.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
9.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
9.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
9.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
9.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
8.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
8.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
8.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
8.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
8.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
8.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
8.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
8.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
8.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
7.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
7.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
7.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
7.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
7.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
7.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
7.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
7.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
7.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
7.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
7.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
7.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
7.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
6.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
6.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
6.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
6.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
6.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
6.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
6.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
5.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
5.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
5.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
5.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
5.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
5.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
5.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
5.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
5.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
5.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
5.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
5.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
5.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
4.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
4.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
4.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
4.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
4.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
4.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
3.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
3.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
3.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
3.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
2.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
327
Tumor
0.8
937
Tumor
0.7
451
Tumor
0.6
746
Normal
0.5
285
Tumor
0.5
137
Tumor
0.5
1015
Tumor
0.5
911
Tumor
0.4
113
Tumor
0.4
518
Normal
0.4
755
Tumor
0.4
111
Normal
0.4
914
Normal
0.4
913
Tumor
0.4
1016
Normal
0.4
738
Normal
0.4
526
Normal
0.4
218
Normal
0.3
878
Normal
0.3
874
Normal
0.3
436
Normal
0.3
816
Normal
0.3
728
Normal
0.3
223
Tumor
0.3
1027
Tumor
0.3
462
Normal
0.3
786
Normal
0.3
868
Normal
0.3
258
Normal
0.3
568
Normal
0.3
778
Normal
0.3
922
Normal
0.3
952
Normal
0.3
426
Normal
0.3
918
Normal
0.3
648
Normal
0.3
554
Normal
0.3
742
Normal
0.3
664
Normal
0.3
468
Normal
0.2
1026
Normal
0.2
534
Normal
0.2
864
Normal
0.2
474
Normal
0.2
396
Normal
0.2
314
Normal
0.2
466
Normal
0.2
172
Normal
0.2
424
Normal
0.2
955
Tumor
0.2
428
Normal
0.2
114
Normal
0.2
162
Normal
0.2
222
Normal
0.2
484
Normal
0.2
212
Normal
0.2
968
Normal
0.2
721
Tumor
0.2
368
Normal
0.2
862
Normal
0.2
148
Normal
0.2
1028
Normal
0.2
124
Normal
0.2
365
Tumor
0.2
214
Normal
0.2
944
Normal
0.2
467
Tumor
0.2
232
Normal
0.2
866
Normal
0.2
196
Normal
0.2
938
Normal
0.2
523
Tumor
0.2
464
Normal
0.2
392
Normal
0.2
756
Normal
0.2
488
Normal
0.2
618
Normal
0.2
713
Tumor
0.2
286
Normal
0.2
145
Tumor
0.2
813
Tumor
0.2
452
Normal
0.2
487
Tumor
0.2
777
Tumor
0.2
1044
Normal
0.2
412
Normal
0.2
981
Tumor
0.2
472
Normal
0.2
824
Normal
0.1
414
Normal
0.1
383
Tumor
0.1
616
Normal
0.1
745
Tumor
0.1
142
Normal
0.1
298
Normal
0.1
615
Tumor
0.1
564
Normal
0.1
228
Normal
0.1
446
Normal
0.1
915
Tumor
0.1
128
Normal
0.1
141
Tumor
0.1
923
Tumor
0.1
723
Tumor
0.1
882
Normal
0.1
328
Normal
0.1
528
Normal
0.1
395
Tumor
0.1
262
Normal
0.1
376
Normal
0.1
956
Normal
0.1
332
Normal
0.1
394
Normal
0.1
422
Normal
0.1
342
Normal
0.1
714
Normal
0.1
966
Normal
0.1
1014
Normal
0.1
356
Normal
0.1
388
Normal
0.1
628
Normal
0.1
278
Normal
0.1
982
Normal
0.1
696
Normal
0.1
482
Normal
0.1
366
Normal
0.1
924
Normal
0.1
984
Normal
0.1
964
Normal
0.1
362
Normal
0.1
636
Normal
0.1
744
Normal
0.1
642
Normal
0.1
432
Normal
0.1
494
Normal
0.1
456
Normal
0.1
434
Normal
0.1
186
Normal
0.1
1041
Tumor
0.1
123
Tumor
0.1
416
Normal
0.1
698
Normal
0.1
344
Normal
0.1
272
Normal
0.1
916
Normal
0.1
1022
Normal
0.1
413
Tumor
0.1
138
Normal
0.1
785
Tumor
0.1
448
Normal
0.1
132
Normal
0.1
858
Normal
0.1
312
Normal
0.1
572
Normal
0.1
722
Normal
0.0
195
Tumor
0.0
386
Normal
0.0
353
Tumor
0.0
976
Normal
0.0
926
Normal
0.0
546
Normal
0.0
686
Normal
0.0
492
Normal
0.0
884
Normal
0.0
136
Normal
0.0
978
Normal
0.0
284
Normal
0.0
267
Tumor
0.0
574
Normal
0.0
558
Normal
0.0
697
Tumor
0.0
627
Tumor
0.0
358
Normal
0.0
191
Tumor
0.0
283
Tumor
0.0
912
Normal
0.0
662
Normal
0.0
423
Tumor
0.0
1045
Tumor
0.0
857
Tumor
0.0
1025
Tumor
0.0
1042
Normal
0.0
1046
Normal
0.0
354
Normal
0.0
352
Normal
0.0
724
Normal
0.0
716
Normal
0.0
481
Tumor
0.0
818
Normal
0.0
126
Normal
0.0
187
Tumor
0.0
461
Tumor
0.0
851
Tumor
-0.1
965
Tumor
-0.1
268
Normal
-0.1
393
Tumor
-0.1
384
Normal
-0.1
954
Normal
-0.1
666
Normal
-0.1
814
Normal
-0.1
917
Tumor
-0.1
188
Normal
-0.1
1032
Normal
-0.1
224
Normal
-0.1
852
Normal
-0.1
445
Tumor
-0.1
527
Tumor
-0.1
261
Tumor
-0.1
427
Tumor
-0.1
873
Tumor
-0.1
617
Tumor
-0.1
536
Normal
-0.1
925
Tumor
-0.1
958
Normal
-0.1
867
Tumor
-0.1
498
Normal
-0.1
146
Normal
-0.1
135
Tumor
-0.1
364
Normal
-0.1
516
Normal
-0.1
538
Normal
-0.1
533
Tumor
-0.1
444
Normal
-0.2
465
Tumor
-0.2
672
Normal
-0.2
524
Normal
-0.2
217
Tumor
-0.2
861
Tumor
-0.2
192
Normal
-0.2
515
Tumor
-0.2
983
Tumor
-0.2
685
Tumor
-0.2
513
Tumor
-0.2
817
Tumor
-0.2
977
Tumor
-0.2
883
Tumor
-0.2
497
Tumor
-0.2
514
Normal
-0.2
863
Tumor
-0.2
211
Tumor
-0.2
967
Tumor
-0.2
557
Tumor
-0.2
415
Tumor
-0.2
185
Tumor
-0.3
535
Tumor
-0.3
823
Tumor
-0.3
881
Tumor
-0.3
447
Tumor
-0.3
433
Tumor
-0.3
743
Tumor
-0.3
741
Tumor
-0.3
147
Tumor
-0.3
665
Tumor
-0.3
311
Tumor
-0.3
367
Tumor
-0.3
943
Tumor
-0.3
463
Tumor
-0.3
478
Normal
-0.3
161
Tumor
-0.3
545
Tumor
-0.4
127
Tumor
-0.4
355
Tumor
-0.4
421
Tumor
-0.4
573
Tumor
-0.4
661
Tumor
-0.4
357
Tumor
-0.4
361
Tumor
-0.4
951
Tumor
-0.4
213
Tumor
-0.4
663
Tumor
-0.4
715
Tumor
-0.4
525
Tumor
-0.4
363
Tumor
-0.4
387
Tumor
-0.4
865
Tumor
-0.5
331
Tumor
-0.5
567
Tumor
-0.5
455
Tumor
-0.5
537
Tumor
-0.5
375
Tumor
-0.5
815
Tumor
-0.5
647
Tumor
-0.5
171
Tumor
-0.5
313
Tumor
-0.5
391
Tumor
-0.5
957
Tumor
-0.5
271
Tumor
-0.5
1013
Tumor
-0.5
443
Tumor
-0.5
493
Tumor
-0.5
435
Tumor
-0.5
491
Tumor
-0.6
563
Tumor
-0.6
963
Tumor
-0.6
877
Tumor
-0.6
277
Tumor
-0.6
727
Tumor
-0.6
571
Tumor
-0.6
431
Tumor
-0.6
385
Tumor
-0.6
297
Tumor
-0.6
921
Tumor
-0.6
737
Tumor
-0.6
343
Tumor
-0.6
695
Tumor
-0.6
1021
Tumor
-0.6
975
Tumor
-0.6
477
Tumor
-0.7
125
Tumor
-0.7
553
Tumor
-0.7
483
Tumor
-0.7
1043
Tumor
-0.7
635
Tumor
-0.7
953
Tumor
-0.7
473
Tumor
-0.7
112
Tumor
-0.7
341
Tumor
-0.7
231
Tumor
-0.7
221
Tumor
-0.7
411
Tumor
-0.7
671
Tumor
-0.8
641
Tumor
-0.8
351
Tumor
-0.8
257
Tumor
-0.8
471
Tumor
-0.9
517
Tumor
-0.9
131
Tumor
-0.9
227
Tumor
-0.9
425
Tumor
-0.9
1031
Tumor
-1.0
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
