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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
126.7
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 113.2
2188
Female, age 91, both hemispheres
135.0
2090
Male, age 80, both hemispheres
119.4
2301
Female, age 85, both hemispheres
107.2
1984
Male, age 76, both hemispheres
91.1
Dorsal cochlear nucleus nTPM: 99.9
2187
Female, age 91, both hemispheres
115.0
2802
Male, age 74, right hemisphere
112.7
2378
Male, age 80, both hemispheres
94.4
2370
Male, age 61, both hemispheres
90.2
2058
Male, age 76, both hemispheres
87.3
Dorsal tegmental nucleus nTPM: 89.6
2326
Male, age 74, both hemispheres
106.6
2083
Male, age 80, both hemispheres
101.6
1936
Male, age 76, left hemisphere
86.5
2358
Male, age 61, both hemispheres
63.7
Dorsolateral tegmental area nTPM: 93.8
2751
Female, age 85, both hemispheres
140.0
2654
Male, age 80, both hemispheres
103.9
2360
Male, age 74, both hemispheres
80.4
2337
Male, age 61, both hemispheres
75.9
2141
Male, age 76, both hemispheres
69.0
Kolliker-Fuse nucleus nTPM: 95.1
2793
Female, age 91, left hemisphere
131.8
2163
Male, age 80, both hemispheres
100.3
2315
Male, age 76, right hemisphere
53.1
Lateral lemniscal nuclei nTPM: 95.2
2320
Female, age 91, left hemisphere
116.3
2453
Male, age 74, right hemisphere
108.4
2036
Male, age 80, both hemispheres
85.9
2746
Female, age 85, left hemisphere
85.3
2169
Male, age 76, both hemispheres
80.0
Lateral parabrachial nucleus nTPM: 100.9
2792
Male, age 76, both hemispheres
113.2
2013
Male, age 80, both hemispheres
108.4
2790
Male, age 61, both hemispheres
108.3
2139
Female, age 85, right hemisphere
73.6
Lateral vestibular nucleus nTPM: 93.9
2184
Male, age 76, both hemispheres
99.0
2311
Male, age 80, both hemispheres
88.9
Locus coeruleus nTPM: 106.1
2720
Male, age 74, both hemispheres
121.2
2788
Male, age 74, unknown
115.0
2014
Male, age 55, unknown
114.6
1980
Male, age 76, both hemispheres
100.8
2162
Male, age 80, both hemispheres
98.5
2317
Female, age 72, unknown
96.7
2123
Female, age 91, both hemispheres
96.2
Medial parabrachial nucleus nTPM: 106.5
2463
Female, age 85, right hemisphere
124.3
2170
Female, age 91, both hemispheres
119.9
2786
Male, age 76, both hemispheres
98.2
2854
Male, age 80, both hemispheres
98.2
2156
Male, age 61, both hemispheres
92.2
Medial periolivary nuclei nTPM: 95.9
2791
Male, age 74, right hemisphere
127.8
2458
Female, age 91, both hemispheres
110.5
2081
Male, age 80, both hemispheres
95.1
2063
Male, age 76, both hemispheres
73.7
2171
Female, age 85, both hemispheres
72.1
Motor facial nucleus nTPM: 98.5
2365
Male, age 74, right hemisphere
129.3
2697
Female, age 85, both hemispheres
111.1
2126
Male, age 61, both hemispheres
107.2
2795
Female, age 91, both hemispheres
87.7
2327
Male, age 80, both hemispheres
87.1
2062
Male, age 76, both hemispheres
68.6
Motor trigeminal nucleus nTPM: 101.7
2560
Male, age 74, both hemispheres
121.5
2321
Female, age 91, both hemispheres
108.7
2309
Male, age 76, both hemispheres
102.6
2335
Male, age 61, both hemispheres
88.4
2079
Male, age 80, both hemispheres
87.4
Nuclei of the trapezoid body nTPM: 85.5
2368
Female, age 91, both hemispheres
105.6
2166
Male, age 80, both hemispheres
100.0
2159
Male, age 61, both hemispheres
84.4
2735
Female, age 85, both hemispheres
70.7
1983
Male, age 76, both hemispheres
66.7
Nucleus raphe magnus nTPM: 88.5
2455
Male, age 74, both hemispheres
115.1
2459
Female, age 91, both hemispheres
108.7
2328
Male, age 80, both hemispheres
97.2
2051
Male, age 76, both hemispheres
76.4
2160
Male, age 61, both hemispheres
67.4
2172
Female, age 85, both hemispheres
66.4
Paramedian reticular nucleus nTPM: 108.5
2052
Male, age 76, both hemispheres
132.4
2057
Male, age 80, both hemispheres
109.7
2313
Male, age 61, both hemispheres
98.5
2050
Female, age 85, both hemispheres
93.2
Pedunculopontine tegmental nucleus nTPM: 105.5
1921
Female, age 85, both hemispheres
115.9
2334
Male, age 80, both hemispheres
105.6
2338
Male, age 61, both hemispheres
95.1
Pontine nuclei nTPM: 100.6
2454
Male, age 74, left hemisphere
176.6
2319
Female, age 91, both hemispheres
114.7
2109
Female, age 72, unknown
111.6
2115
Male, age 80, left hemisphere
87.9
1968
Male, age 76, left hemisphere
84.3
1863
Male, age 55, unknown
80.0
2727
Male, age 61, right hemisphere
79.5
2787
Female, age 85, both hemispheres
70.2
Pontine raphe nucleus nTPM: 100.2
2853
Male, age 76, midline
114.5
2122
Female, age 85, midline
85.9
Posteroventral cochlear nucleus nTPM: 116.7
2135
Female, age 91, both hemispheres
143.2
2070
Male, age 76, both hemispheres
118.3
2341
Male, age 80, both hemispheres
118.3
2752
Female, age 85, both hemispheres
106.9
2371
Male, age 61, both hemispheres
96.7
Principal sensory trigeminal nucleus nTPM: 92.7
2367
Female, age 91, left hemisphere
124.7
2324
Male, age 76, both hemispheres
90.0
2008
Male, age 80, left hemisphere
85.1
2158
Male, age 61, both hemispheres
71.0
Reticular pontine nucleus, caudal nTPM: 110.6
2559
Male, age 74, both hemispheres
155.1
2457
Female, age 91, both hemispheres
115.4
2092
Male, age 76, both hemispheres
92.6
2332
Male, age 80, right hemisphere
79.3
Reticular pontine nucleus, oral nTPM: 126.7
2361
Male, age 74, both hemispheres
144.3
2366
Female, age 91, both hemispheres
133.2
2167
Male, age 76, both hemispheres
131.6
1939
Male, age 80, both hemispheres
123.7
2012
Female, age 85, both hemispheres
100.7
Reticulotegmental nucleus nTPM: 100.1
2452
Male, age 74, both hemispheres
113.1
2322
Female, age 91, both hemispheres
112.8
2325
Male, age 76, both hemispheres
87.7
2333
Male, age 80, both hemispheres
86.7
Spinal trigeminal nucleus, oral nTPM: 102.0
1978
Male, age 76, both hemispheres
120.1
2164
Male, age 80, both hemispheres
95.5
2737
Female, age 85, both hemispheres
90.6
Subcoeruleus area nTPM: 106.3
2369
Female, age 85, left hemisphere
149.9
2451
Male, age 74, both hemispheres
102.9
2323
Female, age 91, left hemisphere
102.0
1958
Male, age 80, both hemispheres
93.3
2089
Male, age 76, left hemisphere
83.5
Superior olive nTPM: 104.3
2364
Male, age 74, right hemisphere
129.7
2561
Female, age 91, both hemispheres
103.3
2020
Male, age 76, both hemispheres
100.3
2329
Male, age 80, right hemisphere
97.1
1875
Female, age 85, both hemispheres
90.8
Ventral periolivary nuclei nTPM: 92.9
2023
Male, age 76, both hemispheres
116.0
2794
Female, age 91, left hemisphere
94.3
2165
Male, age 80, both hemispheres
88.6
2130
Female, age 85, both hemispheres
72.8
Ventrolateral tegmental area, A5 NE cell group nTPM: 100.9
2359
Male, age 61, both hemispheres
112.6
2449
Male, age 74, both hemispheres
112.2
2456
Female, age 91, both hemispheres
112.0
2840
Female, age 85, both hemispheres
96.5
1959
Male, age 76, both hemispheres
88.0
2161
Male, age 80, both hemispheres
84.1
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
81.9
Pig sample
Sample description
nTPM
Pons nTPM: 81.8
Samples: 4
Max nTPM: 94.8
Min nTPM: 65.9
Sample A
Female
65.9
Sample B
Female
94.8
Sample C
Male
85.6
Sample D
Male
81.0
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
