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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PDCD4 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
138.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
68.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
65.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
54.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
51.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
50.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
50.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
50.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
48.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
44.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
42.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
41.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
41.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
38.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
38.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
38.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
38.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
37.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
36.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
36.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
36.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
35.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
34.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
34.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
34.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
33.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
32.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
31.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
31.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
30.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
30.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
30.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
30.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
29.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
28.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
27.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
26.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
26.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
25.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
25.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
25.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
25.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
25.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
25.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
24.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
24.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
24.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
24.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
23.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
23.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
22.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
22.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
22.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
22.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
22.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
22.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
21.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
21.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
21.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
21.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
21.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
21.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
21.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
21.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
21.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
21.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
20.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
20.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
20.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
20.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
20.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
20.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
19.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
19.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
19.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
19.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
19.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
19.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
19.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
19.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
19.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
19.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
19.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
19.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
19.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
18.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
18.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
18.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
18.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
18.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
18.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
18.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
18.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
18.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
17.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
17.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
17.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
17.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
17.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
16.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
16.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
16.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
16.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
16.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
16.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
16.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
16.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
16.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
16.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
16.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
16.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
16.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
16.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
15.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
15.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
15.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
15.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
15.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
15.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
15.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
15.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
15.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
15.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
14.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
14.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
14.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
14.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
14.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
14.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
14.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
14.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
14.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
14.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
14.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
14.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
14.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
13.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
13.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
13.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
13.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
13.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
13.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
13.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
13.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
13.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
13.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
13.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
13.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
13.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
13.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
12.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
12.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
12.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
12.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
12.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
12.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
12.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
12.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
12.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
12.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
12.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
12.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
12.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
12.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
12.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
12.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
12.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
12.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
12.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
12.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
11.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
11.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
11.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
11.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
11.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
11.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
11.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
11.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
11.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
11.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
11.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
11.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
11.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
11.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
11.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
11.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
11.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
11.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
11.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
11.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
11.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
10.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
10.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
10.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
10.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
10.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
10.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
10.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
10.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
10.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
10.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
10.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
10.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
10.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
10.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
10.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
10.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
9.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
9.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
9.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
9.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
9.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
9.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
9.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
9.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
9.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
9.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
9.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
9.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
9.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
9.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
9.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
9.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
9.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
9.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
9.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
9.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
9.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
9.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
9.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
8.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
8.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
8.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
8.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
8.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
8.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
8.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
8.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
8.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
8.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
8.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
8.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
8.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
8.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
8.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
7.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
7.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
7.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
7.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
7.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
7.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
7.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
7.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
7.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
7.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
7.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
7.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
7.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
7.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
7.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
6.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
6.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
6.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
6.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
6.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
6.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
6.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
6.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
6.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
6.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
6.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
6.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
6.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
6.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
6.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
6.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
6.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
6.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
6.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
5.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
5.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
5.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
5.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
5.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
5.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
5.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
5.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
5.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
5.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
5.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
5.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
5.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
5.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
5.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
5.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
5.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
5.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
4.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
4.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
4.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
4.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
4.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
4.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
4.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
4.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
3.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
3.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
3.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
2.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PDCD4 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
23.2
Number of samples
231
Samples
Sample
Description
TPM
DO45303
0 years, female, NA, stage:3, alive, 990 days
139.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
66.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
60.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
59.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
58.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
58.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
57.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
53.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
51.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
47.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
47.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
46.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
46.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
46.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
45.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
43.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
43.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
42.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
42.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
42.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
42.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
41.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
39.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
39.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
39.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
37.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
37.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
36.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
36.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
35.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
35.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
35.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
35.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
35.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
34.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
34.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
34.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
33.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
33.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
32.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
32.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
31.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
31.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
31.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
30.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
30.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
29.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
29.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
29.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
28.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
28.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
28.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
28.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
28.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
28.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
28.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
27.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
27.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
27.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
27.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
27.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
27.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
27.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
27.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
26.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
26.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
25.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
25.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
25.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
25.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
25.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
25.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
25.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
25.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
24.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
24.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
24.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
24.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
24.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
24.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
24.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
24.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
24.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
23.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
23.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
23.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
23.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
23.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
23.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
22.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
22.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
22.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
22.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
22.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
21.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
21.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
21.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
21.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
21.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
21.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
21.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
21.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
21.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
21.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
20.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
20.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
20.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
20.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
20.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
20.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
20.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
20.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
20.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
20.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
20.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
19.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
19.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
19.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
19.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
19.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
19.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
19.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
19.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
19.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
19.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
19.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
19.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
18.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
18.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
18.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
18.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
18.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
18.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
18.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
18.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
18.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
17.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
17.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
17.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
17.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
17.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
17.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
17.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
17.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
17.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
17.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
17.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
17.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
16.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
16.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
16.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
16.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
16.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
16.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
16.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
16.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
16.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
16.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
16.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
16.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
16.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
16.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
15.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
15.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
15.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
15.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
15.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
15.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
15.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
15.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
15.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
15.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
14.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
14.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
14.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
14.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
14.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
14.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
14.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
13.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
13.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
13.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
13.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
13.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
13.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
13.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
13.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
13.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
13.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
13.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
12.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
12.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
12.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
12.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
12.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
12.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
12.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
12.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
12.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
12.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
12.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
12.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
12.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
11.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
11.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
11.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
11.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
11.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
11.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
11.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
10.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
10.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
10.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
10.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
10.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
10.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
10.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
9.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
9.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
9.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
9.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
9.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
8.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
8.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
8.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
8.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
7.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
7.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
6.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
6.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
6.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
131
Tumor
1.7
331
Tumor
1.4
385
Tumor
1.3
815
Tumor
1.2
545
Tumor
1.0
1031
Tumor
1.0
921
Tumor
1.0
743
Tumor
1.0
211
Tumor
1.0
877
Tumor
0.9
727
Tumor
0.9
975
Tumor
0.9
881
Tumor
0.9
695
Tumor
0.9
271
Tumor
0.8
685
Tumor
0.8
661
Tumor
0.8
967
Tumor
0.7
737
Tumor
0.7
641
Tumor
0.7
523
Tumor
0.7
813
Tumor
0.7
285
Tumor
0.7
517
Tumor
0.6
471
Tumor
0.6
413
Tumor
0.6
227
Tumor
0.6
261
Tumor
0.6
297
Tumor
0.6
1021
Tumor
0.6
983
Tumor
0.5
814
Normal
0.5
1043
Tumor
0.5
817
Tumor
0.5
713
Tumor
0.5
363
Tumor
0.5
351
Tumor
0.4
493
Tumor
0.4
553
Tumor
0.4
467
Tumor
0.4
393
Tumor
0.4
557
Tumor
0.3
715
Tumor
0.3
951
Tumor
0.3
535
Tumor
0.3
223
Tumor
0.3
221
Tumor
0.3
963
Tumor
0.3
1025
Tumor
0.3
455
Tumor
0.3
192
Normal
0.3
965
Tumor
0.3
671
Tumor
0.3
492
Normal
0.3
744
Normal
0.2
447
Tumor
0.2
434
Normal
0.2
367
Tumor
0.2
966
Normal
0.2
188
Normal
0.2
483
Tumor
0.2
1027
Tumor
0.2
185
Tumor
0.2
721
Tumor
0.2
277
Tumor
0.2
536
Normal
0.2
538
Normal
0.2
738
Normal
0.2
478
Normal
0.2
664
Normal
0.2
698
Normal
0.2
958
Normal
0.2
135
Tumor
0.1
984
Normal
0.1
923
Tumor
0.1
113
Tumor
0.1
212
Normal
0.1
925
Tumor
0.1
1032
Normal
0.1
917
Tumor
0.1
952
Normal
0.1
1042
Normal
0.1
146
Normal
0.1
126
Normal
0.1
716
Normal
0.1
524
Normal
0.1
386
Normal
0.1
617
Tumor
0.1
341
Tumor
0.1
468
Normal
0.1
714
Normal
0.1
756
Normal
0.1
366
Normal
0.1
362
Normal
0.1
662
Normal
0.1
571
Tumor
0.1
465
Tumor
0.1
976
Normal
0.1
268
Normal
0.1
516
Normal
0.1
1046
Normal
0.1
686
Normal
0.1
384
Normal
0.1
968
Normal
0.1
1044
Normal
0.0
312
Normal
0.0
262
Normal
0.0
742
Normal
0.0
224
Normal
0.0
214
Normal
0.0
852
Normal
0.0
884
Normal
0.0
874
Normal
0.0
421
Tumor
0.0
272
Normal
0.0
355
Tumor
0.0
537
Tumor
0.0
1028
Normal
0.0
376
Normal
0.0
785
Tumor
0.0
916
Normal
0.0
461
Tumor
0.0
778
Normal
0.0
918
Normal
0.0
415
Tumor
0.0
343
Tumor
0.0
498
Normal
0.0
142
Normal
0.0
554
Normal
0.0
278
Normal
0.0
213
Tumor
0.0
672
Normal
0.0
171
Tumor
0.0
416
Normal
0.0
1045
Tumor
0.0
474
Normal
0.0
1022
Normal
0.0
186
Normal
0.0
862
Normal
0.0
924
Normal
-0.1
472
Normal
-0.1
926
Normal
-0.1
396
Normal
-0.1
414
Normal
-0.1
187
Tumor
-0.1
231
Tumor
-0.1
114
Normal
-0.1
978
Normal
-0.1
786
Normal
-0.1
412
Normal
-0.1
195
Tumor
-0.1
332
Normal
-0.1
456
Normal
-0.1
528
Normal
-0.1
425
Tumor
-0.1
111
Normal
-0.1
1026
Normal
-0.1
217
Tumor
-0.1
615
Tumor
-0.1
218
Normal
-0.1
448
Normal
-0.1
728
Normal
-0.1
882
Normal
-0.1
473
Tumor
-0.1
922
Normal
-0.1
724
Normal
-0.1
943
Tumor
-0.1
258
Normal
-0.1
391
Tumor
-0.1
518
Normal
-0.1
534
Normal
-0.1
851
Tumor
-0.1
138
Normal
-0.1
665
Tumor
-0.1
162
Normal
-0.1
697
Tumor
-0.1
232
Normal
-0.1
648
Normal
-0.1
964
Normal
-0.1
444
Normal
-0.1
696
Normal
-0.1
298
Normal
-0.1
746
Normal
-0.1
755
Tumor
-0.1
864
Normal
-0.1
563
Tumor
-0.1
546
Normal
-0.1
284
Normal
-0.1
424
Normal
-0.1
956
Normal
-0.1
344
Normal
-0.1
954
Normal
-0.1
352
Normal
-0.1
914
Normal
-0.1
823
Tumor
-0.1
388
Normal
-0.1
172
Normal
-0.1
313
Tumor
-0.1
1016
Normal
-0.1
124
Normal
-0.1
878
Normal
-0.2
463
Tumor
-0.2
462
Normal
-0.2
445
Tumor
-0.2
723
Tumor
-0.2
938
Normal
-0.2
484
Normal
-0.2
466
Normal
-0.2
777
Tumor
-0.2
494
Normal
-0.2
394
Normal
-0.2
314
Normal
-0.2
873
Tumor
-0.2
866
Normal
-0.2
196
Normal
-0.2
628
Normal
-0.2
228
Normal
-0.2
426
Normal
-0.2
858
Normal
-0.2
356
Normal
-0.2
912
Normal
-0.2
191
Tumor
-0.2
451
Tumor
-0.2
883
Tumor
-0.2
868
Normal
-0.2
311
Tumor
-0.2
666
Normal
-0.2
558
Normal
-0.2
514
Normal
-0.2
464
Normal
-0.2
488
Normal
-0.2
491
Tumor
-0.2
573
Tumor
-0.2
574
Normal
-0.2
136
Normal
-0.2
443
Tumor
-0.2
436
Normal
-0.3
364
Normal
-0.3
452
Normal
-0.3
722
Normal
-0.3
515
Tumor
-0.3
816
Normal
-0.3
865
Tumor
-0.3
953
Tumor
-0.3
428
Normal
-0.3
267
Tumor
-0.3
481
Tumor
-0.3
392
Normal
-0.3
147
Tumor
-0.3
857
Tumor
-0.3
128
Normal
-0.3
132
Normal
-0.3
818
Normal
-0.3
368
Normal
-0.3
955
Tumor
-0.3
286
Normal
-0.3
618
Normal
-0.3
944
Normal
-0.3
222
Normal
-0.3
431
Tumor
-0.3
526
Normal
-0.3
422
Normal
-0.3
446
Normal
-0.3
913
Tumor
-0.3
572
Normal
-0.3
982
Normal
-0.4
525
Tumor
-0.4
148
Normal
-0.4
477
Tumor
-0.4
824
Normal
-0.4
433
Tumor
-0.4
358
Normal
-0.4
911
Tumor
-0.4
328
Normal
-0.4
127
Tumor
-0.4
616
Normal
-0.4
1014
Normal
-0.4
432
Normal
-0.4
383
Tumor
-0.4
145
Tumor
-0.4
361
Tumor
-0.4
482
Normal
-0.4
342
Normal
-0.4
365
Tumor
-0.4
957
Tumor
-0.4
636
Normal
-0.4
642
Normal
-0.4
1015
Tumor
-0.4
568
Normal
-0.4
564
Normal
-0.5
977
Tumor
-0.5
915
Tumor
-0.5
937
Tumor
-0.5
123
Tumor
-0.5
663
Tumor
-0.5
283
Tumor
-0.5
741
Tumor
-0.5
354
Normal
-0.5
1041
Tumor
-0.5
327
Tumor
-0.5
423
Tumor
-0.6
411
Tumor
-0.6
357
Tumor
-0.6
533
Tumor
-0.6
647
Tumor
-0.6
627
Tumor
-0.6
861
Tumor
-0.6
141
Tumor
-0.6
487
Tumor
-0.6
435
Tumor
-0.6
427
Tumor
-0.6
387
Tumor
-0.6
867
Tumor
-0.6
527
Tumor
-0.7
125
Tumor
-0.7
161
Tumor
-0.7
112
Tumor
-0.7
567
Tumor
-0.7
497
Tumor
-0.7
863
Tumor
-0.7
137
Tumor
-0.7
513
Tumor
-0.8
353
Tumor
-0.8
375
Tumor
-0.8
257
Tumor
-0.9
395
Tumor
-0.9
635
Tumor
-1.1
745
Tumor
-1.1
981
Tumor
-1.2
1013
Tumor
-1.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
