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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ITGB1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
141.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
802.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
795.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
710.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
548.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
518.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
508.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
494.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
474.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
440.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
423.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
420.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
400.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
398.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
376.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
369.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
365.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
357.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
356.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
331.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
330.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
315.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
315.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
313.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
311.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
295.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
291.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
289.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
288.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
286.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
278.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
271.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
269.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
268.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
267.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
260.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
250.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
247.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
242.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
241.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
241.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
239.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
233.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
231.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
230.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
227.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
226.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
225.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
223.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
221.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
217.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
217.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
215.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
215.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
214.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
213.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
211.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
209.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
208.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
207.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
206.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
201.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
201.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
201.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
199.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
195.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
194.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
191.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
190.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
188.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
186.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
185.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
182.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
181.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
181.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
181.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
179.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
178.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
178.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
178.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
174.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
174.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
173.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
170.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
170.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
169.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
168.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
167.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
166.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
165.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
165.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
165.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
163.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
163.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
162.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
162.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
161.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
160.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
160.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
160.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
155.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
155.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
155.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
154.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
154.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
152.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
151.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
151.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
151.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
151.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
151.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
150.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
150.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
149.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
149.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
149.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
148.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
147.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
147.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
147.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
146.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
146.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
146.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
146.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
145.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
145.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
145.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
144.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
144.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
143.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
143.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
142.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
141.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
141.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
139.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
138.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
138.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
137.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
136.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
136.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
136.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
136.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
135.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
135.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
135.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
135.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
133.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
133.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
133.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
132.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
132.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
131.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
131.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
131.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
130.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
130.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
129.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
129.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
128.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
127.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
127.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
127.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
126.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
126.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
125.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
125.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
124.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
124.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
124.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
124.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
123.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
122.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
122.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
122.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
122.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
121.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
121.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
120.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
120.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
119.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
118.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
118.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
117.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
117.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
117.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
116.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
116.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
116.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
116.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
115.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
114.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
114.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
113.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
111.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
110.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
109.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
109.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
108.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
107.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
107.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
106.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
105.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
105.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
105.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
105.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
105.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
105.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
105.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
104.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
103.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
102.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
102.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
102.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
102.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
101.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
101.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
101.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
101.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
100.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
100.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
99.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
98.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
98.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
96.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
96.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
96.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
96.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
96.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
95.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
95.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
94.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
94.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
94.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
93.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
92.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
92.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
92.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
92.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
92.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
91.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
91.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
91.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
90.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
89.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
88.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
87.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
87.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
87.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
87.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
86.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
86.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
86.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
85.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
84.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
84.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
84.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
83.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
83.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
83.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
83.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
83.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
81.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
81.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
81.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
81.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
81.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
80.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
79.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
79.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
78.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
78.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
78.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
77.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
77.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
76.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
76.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
75.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
75.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
75.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
75.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
74.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
73.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
73.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
72.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
72.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
72.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
72.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
70.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
70.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
69.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
69.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
69.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
69.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
69.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
69.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
67.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
67.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
66.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
65.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
65.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
64.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
64.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
64.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
63.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
63.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
61.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
60.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
60.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
60.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
60.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
58.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
57.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
57.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
57.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
57.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
56.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
56.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
56.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
55.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
55.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
55.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
55.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
54.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
52.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
51.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
51.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
51.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
50.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
50.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
49.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
49.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
48.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
47.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
47.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
46.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
46.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
45.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
42.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
42.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
40.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
40.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
36.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
36.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
35.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
34.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
34.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
33.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
33.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
33.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
32.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
31.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
30.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
29.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
28.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
27.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
27.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
27.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
26.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
26.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
19.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
18.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
15.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ITGB1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
195.3
Number of samples
231
Samples
Sample
Description
TPM
DO45205
0 years, female, NA, stage:2, dead, 90 days
1254.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
757.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
663.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
616.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
602.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
552.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
530.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
507.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
469.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
457.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
427.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
413.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
409.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
407.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
407.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
402.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
393.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
391.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
374.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
348.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
337.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
332.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
319.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
319.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
312.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
309.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
308.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
306.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
305.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
303.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
295.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
295.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
293.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
291.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
286.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
285.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
282.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
280.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
273.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
270.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
269.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
268.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
268.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
266.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
259.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
259.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
258.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
256.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
255.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
255.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
252.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
250.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
247.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
243.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
236.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
235.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
233.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
231.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
229.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
228.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
227.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
226.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
225.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
224.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
221.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
219.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
218.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
217.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
215.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
214.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
213.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
213.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
212.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
211.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
211.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
210.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
209.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
208.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
206.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
204.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
203.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
203.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
196.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
194.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
193.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
193.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
192.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
191.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
187.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
187.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
186.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
186.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
185.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
185.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
183.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
182.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
181.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
180.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
179.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
178.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
175.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
174.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
173.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
173.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
172.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
172.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
169.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
167.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
166.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
165.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
165.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
164.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
164.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
162.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
161.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
159.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
158.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
157.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
156.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
156.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
155.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
154.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
153.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
153.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
147.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
147.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
146.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
146.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
145.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
145.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
144.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
143.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
143.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
142.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
140.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
140.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
140.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
140.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
136.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
135.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
134.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
134.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
133.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
133.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
132.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
132.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
132.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
130.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
130.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
129.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
128.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
127.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
127.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
127.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
126.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
126.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
126.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
125.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
125.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
124.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
124.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
124.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
124.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
123.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
123.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
122.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
122.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
121.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
116.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
116.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
115.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
115.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
113.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
111.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
111.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
110.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
110.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
110.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
110.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
109.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
109.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
109.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
109.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
108.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
108.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
107.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
107.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
107.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
106.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
106.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
105.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
104.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
103.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
102.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
102.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
101.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
100.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
99.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
98.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
97.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
96.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
95.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
94.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
94.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
94.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
91.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
91.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
90.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
90.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
87.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
86.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
85.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
85.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
85.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
84.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
84.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
81.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
80.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
80.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
77.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
76.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
73.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
71.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
70.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
68.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
68.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
52.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
49.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
46.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
44.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
20.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
131
Tumor
0.8
813
Tumor
0.7
553
Tumor
0.6
538
Normal
0.6
1025
Tumor
0.6
497
Tumor
0.6
737
Tumor
0.6
715
Tumor
0.6
743
Tumor
0.6
285
Tumor
0.6
523
Tumor
0.5
975
Tumor
0.5
744
Normal
0.5
1043
Tumor
0.4
517
Tumor
0.4
817
Tumor
0.4
192
Normal
0.4
545
Tumor
0.4
527
Tumor
0.4
878
Normal
0.4
746
Normal
0.4
685
Tumor
0.4
311
Tumor
0.4
515
Tumor
0.3
498
Normal
0.3
554
Normal
0.3
727
Tumor
0.3
223
Tumor
0.3
952
Normal
0.3
983
Tumor
0.3
363
Tumor
0.3
981
Tumor
0.3
963
Tumor
0.3
412
Normal
0.3
536
Normal
0.3
492
Normal
0.3
455
Tumor
0.3
478
Normal
0.3
697
Tumor
0.3
344
Normal
0.3
977
Tumor
0.3
261
Tumor
0.3
343
Tumor
0.2
815
Tumor
0.2
911
Tumor
0.2
967
Tumor
0.2
185
Tumor
0.2
1028
Normal
0.2
473
Tumor
0.2
915
Tumor
0.2
874
Normal
0.2
672
Normal
0.2
421
Tumor
0.2
943
Tumor
0.2
387
Tumor
0.2
816
Normal
0.2
425
Tumor
0.2
448
Normal
0.2
958
Normal
0.2
297
Tumor
0.2
364
Normal
0.2
982
Normal
0.2
778
Normal
0.2
355
Tumor
0.1
472
Normal
0.1
415
Tumor
0.1
124
Normal
0.1
924
Normal
0.1
823
Tumor
0.1
214
Normal
0.1
966
Normal
0.1
976
Normal
0.1
518
Normal
0.1
572
Normal
0.1
686
Normal
0.1
568
Normal
0.1
257
Tumor
0.1
1015
Tumor
0.1
146
Normal
0.1
916
Normal
0.1
814
Normal
0.1
1044
Normal
0.1
212
Normal
0.1
917
Tumor
0.1
716
Normal
0.1
483
Tumor
0.1
342
Normal
0.1
447
Tumor
0.1
1031
Tumor
0.1
516
Normal
0.1
698
Normal
0.1
126
Normal
0.1
494
Normal
0.1
386
Normal
0.1
196
Normal
0.1
984
Normal
0.1
434
Normal
0.1
738
Normal
0.1
938
Normal
0.1
356
Normal
0.1
422
Normal
0.1
742
Normal
0.1
376
Normal
0.1
533
Tumor
0.1
852
Normal
0.1
461
Tumor
0.1
1013
Tumor
0.1
546
Normal
0.1
444
Normal
0.1
965
Tumor
0.1
135
Tumor
0.0
493
Tumor
0.0
125
Tumor
0.0
728
Normal
0.0
944
Normal
0.0
1032
Normal
0.0
352
Normal
0.0
142
Normal
0.0
881
Tumor
0.0
696
Normal
0.0
268
Normal
0.0
954
Normal
0.0
956
Normal
0.0
186
Normal
0.0
721
Tumor
0.0
426
Normal
0.0
474
Normal
0.0
362
Normal
0.0
368
Normal
0.0
187
Tumor
0.0
923
Tumor
0.0
488
Normal
0.0
867
Tumor
0.0
563
Tumor
0.0
824
Normal
0.0
1022
Normal
0.0
224
Normal
0.0
298
Normal
0.0
723
Tumor
0.0
535
Tumor
0.0
877
Tumor
0.0
471
Tumor
0.0
921
Tumor
0.0
695
Tumor
0.0
558
Normal
0.0
574
Normal
0.0
755
Tumor
0.0
272
Normal
0.0
534
Normal
0.0
128
Normal
0.0
618
Normal
0.0
416
Normal
0.0
481
Tumor
0.0
491
Tumor
0.0
228
Normal
0.0
818
Normal
0.0
968
Normal
0.0
138
Normal
0.0
354
Normal
0.0
1016
Normal
0.0
136
Normal
0.0
462
Normal
0.0
284
Normal
0.0
528
Normal
0.0
188
Normal
0.0
525
Tumor
0.0
955
Tumor
0.0
1026
Normal
0.0
922
Normal
0.0
436
Normal
-0.1
524
Normal
-0.1
383
Tumor
-0.1
636
Normal
-0.1
866
Normal
-0.1
132
Normal
-0.1
868
Normal
-0.1
526
Normal
-0.1
862
Normal
-0.1
785
Tumor
-0.1
332
Normal
-0.1
1021
Tumor
-0.1
918
Normal
-0.1
357
Tumor
-0.1
482
Normal
-0.1
331
Tumor
-0.1
1041
Tumor
-0.1
314
Normal
-0.1
662
Normal
-0.1
1014
Normal
-0.1
312
Normal
-0.1
111
Normal
-0.1
1042
Normal
-0.1
664
Normal
-0.1
452
Normal
-0.1
714
Normal
-0.1
468
Normal
-0.1
786
Normal
-0.1
466
Normal
-0.1
232
Normal
-0.1
413
Tumor
-0.1
278
Normal
-0.1
914
Normal
-0.1
1046
Normal
-0.1
456
Normal
-0.1
666
Normal
-0.1
328
Normal
-0.1
884
Normal
-0.1
446
Normal
-0.1
433
Tumor
-0.1
864
Normal
-0.1
392
Normal
-0.1
162
Normal
-0.1
385
Tumor
-0.1
514
Normal
-0.1
882
Normal
-0.1
396
Normal
-0.1
358
Normal
-0.1
978
Normal
-0.1
464
Normal
-0.1
431
Tumor
-0.1
671
Tumor
-0.1
384
Normal
-0.1
642
Normal
-0.1
648
Normal
-0.1
394
Normal
-0.1
161
Tumor
-0.1
451
Tumor
-0.1
858
Normal
-0.1
537
Tumor
-0.1
713
Tumor
-0.1
148
Normal
-0.1
137
Tumor
-0.1
484
Normal
-0.1
286
Normal
-0.1
114
Normal
-0.1
271
Tumor
-0.2
395
Tumor
-0.2
487
Tumor
-0.2
432
Normal
-0.2
628
Normal
-0.2
857
Tumor
-0.2
366
Normal
-0.2
756
Normal
-0.2
414
Normal
-0.2
141
Tumor
-0.2
964
Normal
-0.2
445
Tumor
-0.2
564
Normal
-0.2
427
Tumor
-0.2
222
Normal
-0.2
172
Normal
-0.2
218
Normal
-0.2
745
Tumor
-0.2
617
Tumor
-0.2
258
Normal
-0.2
463
Tumor
-0.2
388
Normal
-0.2
227
Tumor
-0.2
191
Tumor
-0.2
883
Tumor
-0.2
861
Tumor
-0.2
912
Normal
-0.2
722
Normal
-0.2
477
Tumor
-0.2
951
Tumor
-0.2
913
Tumor
-0.2
428
Normal
-0.2
616
Normal
-0.2
127
Tumor
-0.2
1027
Tumor
-0.2
262
Normal
-0.2
424
Normal
-0.2
341
Tumor
-0.2
467
Tumor
-0.2
567
Tumor
-0.2
777
Tumor
-0.2
211
Tumor
-0.2
851
Tumor
-0.3
1045
Tumor
-0.3
361
Tumor
-0.3
277
Tumor
-0.3
873
Tumor
-0.3
195
Tumor
-0.3
423
Tumor
-0.3
145
Tumor
-0.3
171
Tumor
-0.3
661
Tumor
-0.3
615
Tumor
-0.3
741
Tumor
-0.3
925
Tumor
-0.3
327
Tumor
-0.3
926
Normal
-0.3
435
Tumor
-0.3
937
Tumor
-0.3
353
Tumor
-0.3
863
Tumor
-0.3
665
Tumor
-0.3
411
Tumor
-0.3
465
Tumor
-0.3
367
Tumor
-0.3
724
Normal
-0.3
213
Tumor
-0.4
283
Tumor
-0.4
231
Tumor
-0.4
147
Tumor
-0.4
393
Tumor
-0.4
513
Tumor
-0.4
123
Tumor
-0.4
647
Tumor
-0.4
443
Tumor
-0.4
217
Tumor
-0.4
365
Tumor
-0.5
557
Tumor
-0.5
641
Tumor
-0.5
957
Tumor
-0.5
112
Tumor
-0.5
573
Tumor
-0.5
953
Tumor
-0.5
627
Tumor
-0.6
391
Tumor
-0.6
375
Tumor
-0.6
635
Tumor
-0.6
865
Tumor
-0.6
221
Tumor
-0.6
351
Tumor
-0.6
571
Tumor
-0.6
663
Tumor
-0.7
113
Tumor
-0.7
313
Tumor
-0.7
267
Tumor
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.