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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
B3GAT3 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
37.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
128.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
116.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
108.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
92.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
90.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
89.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
88.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
84.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
81.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
79.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
79.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
74.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
73.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
72.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
72.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
72.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
71.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
69.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
69.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
68.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
67.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
67.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
65.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
63.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
63.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
63.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
63.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
62.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
61.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
61.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
60.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
60.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
60.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
60.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
60.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
59.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
59.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
58.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
58.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
58.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
58.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
58.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
58.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
58.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
58.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
57.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
57.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
57.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
56.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
56.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
56.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
56.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
55.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
55.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
55.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
55.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
55.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
55.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
54.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
54.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
54.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
54.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
54.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
53.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
53.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
53.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
52.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
52.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
52.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
52.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
51.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
51.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
50.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
50.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
49.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
49.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
49.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
48.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
48.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
48.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
48.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
48.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
47.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
47.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
47.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
47.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
47.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
47.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
47.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
46.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
46.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
46.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
46.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
46.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
46.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
45.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
45.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
45.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
45.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
45.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
44.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
44.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
44.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
44.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
44.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
44.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
44.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
43.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
43.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
42.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
42.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
42.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
42.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
42.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
42.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
42.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
42.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
42.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
42.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
41.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
41.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
41.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
41.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
41.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
41.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
41.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
40.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
40.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
40.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
40.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
40.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
40.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
40.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
40.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
40.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
40.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
40.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
40.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
39.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
39.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
39.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
39.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
39.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
39.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
39.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
39.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
39.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
38.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
38.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
38.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
38.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
37.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
37.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
37.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
37.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
37.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
37.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
37.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
37.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
37.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
36.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
36.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
36.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
35.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
35.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
35.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
35.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
35.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
35.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
35.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
35.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
35.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
35.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
35.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
35.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
35.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
35.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
34.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
34.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
34.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
34.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
34.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
34.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
34.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
33.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
33.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
33.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
33.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
33.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
33.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
32.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
32.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
32.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
31.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
31.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
31.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
31.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
31.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
31.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
30.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
30.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
30.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
30.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
30.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
30.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
30.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
30.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
30.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
30.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
30.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
30.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
30.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
30.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
30.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
29.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
29.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
29.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
29.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
29.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
29.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
29.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
28.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
28.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
28.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
28.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
28.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
28.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
28.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
28.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
27.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
27.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
27.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
27.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
27.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
27.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
27.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
27.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
26.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
26.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
26.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
26.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
26.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
26.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
26.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
26.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
26.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
26.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
26.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
26.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
26.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
26.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
26.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
26.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
26.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
25.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
25.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
25.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
25.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
25.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
25.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
25.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
25.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
25.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
24.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
24.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
24.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
24.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
24.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
24.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
24.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
24.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
24.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
24.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
24.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
24.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
24.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
24.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
24.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
23.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
23.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
23.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
23.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
23.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
23.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
23.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
23.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
23.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
23.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
23.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
22.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
22.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
22.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
22.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
22.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
22.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
22.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
22.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
21.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
21.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
21.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
21.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
21.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
21.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
21.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
20.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
20.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
20.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
20.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
20.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
20.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
20.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
20.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
20.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
19.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
19.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
19.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
19.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
19.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
19.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
19.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
19.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
19.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
19.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
18.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
18.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
18.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
18.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
18.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
18.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
17.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
17.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
17.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
17.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
17.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
17.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
16.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
16.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
16.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
16.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
16.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
16.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
16.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
16.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
15.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
15.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
15.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
15.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
15.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
14.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
14.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
14.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
14.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
14.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
14.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
14.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
13.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
13.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
12.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
12.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
10.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
9.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
B3GAT3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
24.7
Number of samples
231
Samples
Sample
Description
TPM
DO45209
0 years, male, NA, stage:4, alive, 1350 days
114.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
78.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
78.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
76.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
76.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
67.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
62.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
62.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
59.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
53.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
52.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
51.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
51.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
51.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
50.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
50.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
50.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
50.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
49.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
49.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
48.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
44.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
41.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
40.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
39.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
39.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
38.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
38.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
37.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
37.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
37.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
36.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
36.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
35.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
35.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
35.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
35.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
35.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
35.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
34.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
34.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
33.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
33.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
33.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
33.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
33.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
33.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
33.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
32.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
32.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
32.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
31.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
30.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
30.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
30.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
30.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
30.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
30.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
29.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
29.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
29.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
29.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
29.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
29.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
29.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
29.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
29.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
28.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
28.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
28.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
28.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
28.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
28.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
27.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
27.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
27.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
27.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
27.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
27.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
26.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
26.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
26.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
25.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
25.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
25.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
25.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
25.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
24.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
24.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
24.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
24.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
23.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
23.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
23.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
23.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
23.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
23.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
23.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
22.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
22.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
22.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
22.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
22.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
22.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
22.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
21.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
21.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
21.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
21.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
21.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
21.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
21.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
21.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
21.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
20.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
20.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
20.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
20.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
20.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
20.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
20.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
20.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
20.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
20.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
20.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
19.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
19.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
19.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
19.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
19.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
19.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
19.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
19.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
19.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
19.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
18.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
18.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
18.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
18.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
18.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
18.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
18.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
18.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
18.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
18.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
18.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
18.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
17.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
17.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
17.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
17.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
17.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
17.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
17.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
17.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
17.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
17.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
16.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
16.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
16.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
16.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
16.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
16.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
16.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
16.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
15.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
15.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
15.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
15.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
15.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
15.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
15.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
14.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
14.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
14.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
14.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
14.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
14.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
14.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
14.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
13.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
13.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
13.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
13.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
13.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
13.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
13.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
13.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
13.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
13.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
13.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
13.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
13.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
12.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
12.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
12.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
12.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
12.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
12.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
11.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
11.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
11.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
11.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
11.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
11.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
11.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
10.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
10.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
10.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
10.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
10.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
10.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
9.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
9.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
9.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
9.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
9.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
8.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
8.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
8.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
8.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
7.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
7.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
7.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
7.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
6.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
6.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
5.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
5.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
5.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
925
Tumor
2.0
533
Tumor
1.2
1027
Tumor
1.2
387
Tumor
1.2
883
Tumor
1.1
395
Tumor
1.1
913
Tumor
1.1
427
Tumor
0.9
435
Tumor
0.9
1021
Tumor
0.9
937
Tumor
0.8
213
Tumor
0.8
145
Tumor
0.8
267
Tumor
0.8
257
Tumor
0.8
815
Tumor
0.8
443
Tumor
0.7
923
Tumor
0.7
953
Tumor
0.7
357
Tumor
0.7
573
Tumor
0.7
313
Tumor
0.7
125
Tumor
0.6
471
Tumor
0.6
557
Tumor
0.6
191
Tumor
0.6
813
Tumor
0.6
277
Tumor
0.6
463
Tumor
0.6
525
Tumor
0.6
823
Tumor
0.6
391
Tumor
0.6
361
Tumor
0.6
721
Tumor
0.6
341
Tumor
0.5
1041
Tumor
0.5
351
Tumor
0.5
367
Tumor
0.5
951
Tumor
0.5
527
Tumor
0.5
423
Tumor
0.5
112
Tumor
0.5
647
Tumor
0.5
368
Normal
0.5
421
Tumor
0.5
147
Tumor
0.4
365
Tumor
0.4
123
Tumor
0.4
641
Tumor
0.4
411
Tumor
0.4
414
Normal
0.4
911
Tumor
0.4
465
Tumor
0.4
727
Tumor
0.4
217
Tumor
0.4
426
Normal
0.4
383
Tumor
0.4
563
Tumor
0.4
343
Tumor
0.4
384
Normal
0.4
428
Normal
0.4
366
Normal
0.4
617
Tumor
0.3
353
Tumor
0.3
113
Tumor
0.3
195
Tumor
0.3
535
Tumor
0.3
745
Tumor
0.3
665
Tumor
0.3
814
Normal
0.3
865
Tumor
0.3
185
Tumor
0.3
567
Tumor
0.3
388
Normal
0.3
433
Tumor
0.3
268
Normal
0.2
394
Normal
0.2
396
Normal
0.2
445
Tumor
0.2
141
Tumor
0.2
755
Tumor
0.2
981
Tumor
0.2
258
Normal
0.2
413
Tumor
0.2
327
Tumor
0.2
162
Normal
0.2
857
Tumor
0.2
221
Tumor
0.2
671
Tumor
0.2
188
Normal
0.2
172
Normal
0.2
186
Normal
0.2
513
Tumor
0.2
148
Normal
0.2
967
Tumor
0.2
424
Normal
0.2
627
Tumor
0.2
1045
Tumor
0.2
392
Normal
0.2
464
Normal
0.2
635
Tumor
0.2
352
Normal
0.2
451
Tumor
0.2
468
Normal
0.2
218
Normal
0.2
127
Tumor
0.2
386
Normal
0.2
187
Tumor
0.2
851
Tumor
0.2
311
Tumor
0.2
456
Normal
0.2
137
Tumor
0.2
446
Normal
0.2
571
Tumor
0.1
477
Tumor
0.1
926
Normal
0.1
161
Tumor
0.1
331
Tumor
0.1
1013
Tumor
0.1
124
Normal
0.1
393
Tumor
0.1
375
Tumor
0.1
863
Tumor
0.1
136
Normal
0.1
663
Tumor
0.1
422
Normal
0.1
615
Tumor
0.1
467
Tumor
0.1
743
Tumor
0.1
452
Normal
0.1
537
Tumor
0.1
447
Tumor
0.1
642
Normal
0.1
685
Tumor
0.1
672
Normal
0.1
515
Tumor
0.1
574
Normal
0.1
444
Normal
0.1
231
Tumor
0.1
431
Tumor
0.1
564
Normal
0.1
354
Normal
0.1
297
Tumor
0.1
272
Normal
0.1
286
Normal
0.1
332
Normal
0.1
232
Normal
0.1
756
Normal
0.1
568
Normal
0.1
741
Tumor
0.1
777
Tumor
0.1
342
Normal
0.1
358
Normal
0.1
224
Normal
0.1
491
Tumor
0.1
526
Normal
0.1
362
Normal
0.1
867
Tumor
0.1
425
Tumor
0.1
214
Normal
0.1
312
Normal
0.1
636
Normal
0.1
171
Tumor
0.0
524
Normal
0.0
481
Tumor
0.0
415
Tumor
0.0
722
Normal
0.0
114
Normal
0.0
666
Normal
0.0
1043
Tumor
0.0
922
Normal
0.0
478
Normal
0.0
558
Normal
0.0
314
Normal
0.0
455
Tumor
0.0
432
Normal
0.0
376
Normal
0.0
873
Tumor
0.0
618
Normal
0.0
271
Tumor
0.0
262
Normal
0.0
126
Normal
0.0
912
Normal
0.0
916
Normal
0.0
977
Tumor
0.0
228
Normal
0.0
227
Tumor
0.0
482
Normal
0.0
737
Tumor
0.0
664
Normal
0.0
983
Tumor
0.0
261
Tumor
0.0
434
Normal
0.0
786
Normal
0.0
884
Normal
0.0
696
Normal
0.0
222
Normal
0.0
474
Normal
0.0
111
Normal
0.0
132
Normal
-0.1
882
Normal
-0.1
278
Normal
-0.1
284
Normal
-0.1
1028
Normal
-0.1
344
Normal
-0.1
877
Tumor
-0.1
212
Normal
-0.1
628
Normal
-0.1
616
Normal
-0.1
648
Normal
-0.1
662
Normal
-0.1
957
Tumor
-0.1
943
Tumor
-0.1
978
Normal
-0.1
1042
Normal
-0.1
285
Tumor
-0.1
298
Normal
-0.1
881
Tumor
-0.1
138
Normal
-0.1
436
Normal
-0.1
128
Normal
-0.1
1026
Normal
-0.1
461
Tumor
-0.1
528
Normal
-0.1
523
Tumor
-0.1
918
Normal
-0.1
135
Tumor
-0.1
536
Normal
-0.1
963
Tumor
-0.1
661
Tumor
-0.1
355
Tumor
-0.1
448
Normal
-0.1
686
Normal
-0.1
466
Normal
-0.1
572
Normal
-0.1
364
Normal
-0.1
146
Normal
-0.1
514
Normal
-0.1
964
Normal
-0.1
493
Tumor
-0.1
1046
Normal
-0.1
1044
Normal
-0.1
472
Normal
-0.1
874
Normal
-0.1
192
Normal
-0.1
976
Normal
-0.1
723
Tumor
-0.1
534
Normal
-0.1
982
Normal
-0.2
223
Tumor
-0.2
728
Normal
-0.2
517
Tumor
-0.2
1032
Normal
-0.2
196
Normal
-0.2
1014
Normal
-0.2
713
Tumor
-0.2
462
Normal
-0.2
861
Tumor
-0.2
868
Normal
-0.2
968
Normal
-0.2
488
Normal
-0.2
328
Normal
-0.2
545
Tumor
-0.2
954
Normal
-0.2
924
Normal
-0.2
984
Normal
-0.2
473
Tumor
-0.2
483
Tumor
-0.2
142
Normal
-0.2
966
Normal
-0.2
858
Normal
-0.2
724
Normal
-0.2
778
Normal
-0.3
516
Normal
-0.3
487
Tumor
-0.3
211
Tumor
-0.3
958
Normal
-0.3
744
Normal
-0.3
955
Tumor
-0.3
498
Normal
-0.3
356
Normal
-0.3
742
Normal
-0.3
497
Tumor
-0.3
878
Normal
-0.3
554
Normal
-0.3
1025
Tumor
-0.3
697
Tumor
-0.3
1022
Normal
-0.3
363
Tumor
-0.3
944
Normal
-0.3
698
Normal
-0.3
416
Normal
-0.3
494
Normal
-0.3
738
Normal
-0.3
714
Normal
-0.3
824
Normal
-0.3
385
Tumor
-0.3
862
Normal
-0.4
716
Normal
-0.4
785
Tumor
-0.4
518
Normal
-0.4
956
Normal
-0.4
864
Normal
-0.4
546
Normal
-0.4
538
Normal
-0.4
917
Tumor
-0.4
818
Normal
-0.4
412
Normal
-0.4
866
Normal
-0.4
915
Tumor
-0.4
746
Normal
-0.4
952
Normal
-0.4
914
Normal
-0.5
965
Tumor
-0.5
283
Tumor
-0.5
938
Normal
-0.5
921
Tumor
-0.5
1016
Normal
-0.5
816
Normal
-0.5
1015
Tumor
-0.5
492
Normal
-0.5
715
Tumor
-0.5
131
Tumor
-0.5
1031
Tumor
-0.5
484
Normal
-0.5
852
Normal
-0.5
975
Tumor
-0.6
695
Tumor
-0.8
553
Tumor
-0.8
817
Tumor
-1.2
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
