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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
28.2
nTPM
HPA Brain:
140.7
nTPM
GTEx:
28.2
nTPM
FANTOM5:
62.9
Scaled Tags Per Million
Pig:
67.9
nTPM
Mouse:
187.6
nTPM
Allen mouse:
1.1
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
140.7
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 102.9
2828
Female, age 72, unknown
133.4
1827
Male, age 72, unknown
125.8
1870
Female, age 42, unknown
118.5
2586
Male, age 75, left hemisphere
114.1
2411
Female, age 72, unknown
105.0
1833
Male, age 53, unknown
103.3
1830
Male, age 51, unknown
98.6
2666
Male, age 74, left hemisphere
96.4
2219
Male, age 76, both hemispheres
69.4
2019
Male, age 18, unknown
64.0
Dorsal raphe nucleus nTPM: 118.1
2047
Male, age 72, unknown
136.2
2298
Female, age 72, unknown
131.3
2016
Female, age 72, unknown
114.6
2750
Male, age 76, both hemispheres
110.3
1828
Male, age 53, unknown
98.2
Inferior colliculus nTPM: 96.1
1848
Female, age 42, unknown
108.7
2849
Male, age 72, unknown
104.3
2097
Female, age 72, unknown
92.6
1890
Male, age 53, unknown
79.0
Median raphe nucleus nTPM: 120.3
2220
Male, age 76, midline
120.3
Periaquaductal grey, anterior nTPM: 132.1
1947
Male, age 18, unknown
145.3
2502
Female, age 75, unknown
128.5
1795
Male, age 51, unknown
122.7
Periaquaductal grey, dorsal nTPM: 119.5
2850
Male, age 76, both hemispheres
132.7
2464
Female, age 72, unknown
118.3
1831
Male, age 72, unknown
117.0
1840
Male, age 53, unknown
109.9
Periaquaductal grey, lateral nTPM: 140.7
2053
Male, age 18, unknown
173.6
2140
Male, age 76, both hemispheres
146.4
2272
Male, age 74, both hemispheres
102.2
Pretectal area nTPM: 113.0
2825
Male, age 18, unknown
149.7
2667
Female, age 75, unknown
142.4
2224
Female, age 72, unknown
134.4
2316
Male, age 76, right hemisphere
125.4
2273
Male, age 74, both hemispheres
118.1
2407
Male, age 75, both hemispheres
117.2
1815
Male, age 53, unknown
111.1
1817
Female, age 42, unknown
91.2
1816
Male, age 51, unknown
89.1
1944
Female, age 72, unknown
88.2
2007
Male, age 72, unknown
76.4
Red nucleus nTPM: 87.5
1904
Male, age 53, unknown
97.9
1954
Female, age 42, unknown
96.7
1865
Male, age 51, unknown
96.3
2503
Female, age 72, unknown
93.6
1821
Female, age 72, unknown
92.9
2823
Male, age 76, right hemisphere
90.8
2588
Male, age 74, left hemisphere
88.4
2725
Female, age 75, unknown
86.7
2769
Male, age 72, unknown
85.9
2227
Male, age 72, unknown
85.2
2584
Male, age 75, left hemisphere
68.1
2785
Male, age 18, unknown
67.2
Substantia nigra nTPM: 68.1
1889
Female, age 72, unknown
84.4
2699
Male, age 18, unknown
76.6
1941
Male, age 53, unknown
75.4
1916
Female, age 42, unknown
72.7
1851
Male, age 51, unknown
72.4
2583
Male, age 75, right hemisphere
64.6
2665
Male, age 74, both hemispheres
64.5
2590
Female, age 75, unknown
60.1
2241
Male, age 72, unknown
58.5
2409
Female, age 72, unknown
51.5
Superior colliculus nTPM: 113.0
2664
Male, age 75, both hemispheres
150.4
1995
Male, age 72, unknown
123.2
1839
Male, age 51, unknown
120.7
1895
Male, age 76, right hemisphere
120.7
1913
Female, age 42, unknown
115.2
1796
Male, age 53, unknown
109.3
2261
Male, age 18, unknown
105.8
2668
Female, age 75, unknown
100.1
2087
Female, age 72, unknown
93.5
2587
Male, age 74, left hemisphere
91.3
Ventral tegmental area nTPM: 96.8
2021
Male, age 53, unknown
118.5
1942
Male, age 51, unknown
101.8
2410
Female, age 72, unknown
94.1
2218
Male, age 76, both hemispheres
92.0
1915
Female, age 42, unknown
90.7
2223
Female, age 72, unknown
84.0
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
28.2
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 28.2
Samples: 139
Max nTPM: 68.7
Min nTPM: 11.5
Std nTPM: 9.7
Median nTPM: 26.3
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
68.7
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
59.0
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
50.3
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
47.1
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
46.6
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
46.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
45.9
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
45.5
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
44.8
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
44.6
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
43.8
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
43.7
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
43.4
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
42.4
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
41.8
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
41.2
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
41.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
40.4
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
40.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
39.9
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
39.2
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
38.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
38.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
37.8
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
37.2
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
36.6
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
36.5
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
36.3
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
35.4
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
35.1
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
35.0
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
34.9
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
33.8
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
33.0
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
32.9
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
32.6
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
32.6
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
32.3
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
31.9
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
31.8
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
31.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
31.8
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
31.6
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
31.5
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
31.4
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
31.1
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
30.7
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
30.4
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
30.4
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
30.3
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
30.1
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
30.1
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
30.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
30.0
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
29.8
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
29.3
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
29.2
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
29.0
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
28.9
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
28.8
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
28.6
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
28.3
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
28.1
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
27.9
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
27.5
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
27.4
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
27.4
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
27.3
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
26.5
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
26.3
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
26.2
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
26.2
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
26.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
26.2
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
26.1
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
26.1
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
25.7
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
25.5
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
25.4
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
25.3
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
25.3
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
25.2
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
24.9
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
24.5
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
24.5
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
24.4
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
24.3
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
23.9
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
23.6
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
23.6
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
23.5
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
23.4
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
23.2
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
23.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
23.1
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
22.4
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
22.3
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
22.2
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
21.8
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
21.6
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
21.2
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
20.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
20.8
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
20.7
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
20.6
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
20.5
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
20.5
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
20.5
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
20.5
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
20.4
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
20.4
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
20.1
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
19.9
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
19.7
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
19.6
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
19.5
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
19.1
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
19.1
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
18.6
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
18.3
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
18.2
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
18.2
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
17.9
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
17.7
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
17.5
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
16.9
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
16.4
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
16.3
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
16.2
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
16.1
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
15.6
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
15.2
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
14.9
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
14.2
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
14.0
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
13.8
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
12.9
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
12.7
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
11.5
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
187.6
Mouse sample
Sample description
nTPM
Midbrain nTPM: 187.6
Samples: 4
Max nTPM: 197.7
Min nTPM: 179.3
Sample A
Male
197.7
Sample B
Male
179.3
Sample C
Female
189.9
Sample D
Female
183.4
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.