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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Medium
Neuronal cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
39.4
nTPM
HPA Brain:
90.5
nTPM
GTEx:
39.4
nTPM
FANTOM5:
105.3
Scaled Tags Per Million
Pig:
49.5
nTPM
Mouse:
156.7
nTPM
Allen mouse:
2.4
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA042705
Glial cells
Medium
Neuronal cells
Not detected
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
90.5
Sample id
Sample description
nTPM
Hippocampus nTPM: 90.5
1911
Female, age 85, right hemisphere
103.6
1898
Male, age 80, left hemisphere
102.4
2148
Female, age 91, left hemisphere
95.6
1855
Male, age 76, left hemisphere
89.7
2621
Female, age 67, right hemisphere
76.8
2529
Female, age 94, left hemisphere
74.6
Dentate gyrus nTPM: 86.3
2528
Male, age 74, both hemispheres
111.5
2246
Female, age 85, both hemispheres
93.0
2010
Male, age 76, both hemispheres
81.6
2530
Female, age 94, left hemisphere
80.1
1927
Female, age 91, both hemispheres
77.4
2531
Female, age 67, both hemispheres
74.3
Entorhinal gyrus nTPM: 80.1
2117
Female, age 91, right hemisphere
100.3
2686
Male, age 75, right hemisphere
83.8
1938
Female, age 85, left hemisphere
80.2
1787
Male, age 76, left hemisphere
80.0
2764
Male, age 80, right hemisphere
74.8
2613
Female, age 94, left hemisphere
61.8
Hippocampus, CA1 nTPM: 81.1
1873
Female, age 85, both hemispheres
102.2
2527
Male, age 74, both hemispheres
89.4
2082
Female, age 91, right hemisphere
87.6
2749
Male, age 80, left hemisphere
64.1
2045
Male, age 76, both hemispheres
62.1
Hippocampus, CA2 nTPM: 88.4
2249
Male, age 74, both hemispheres
118.7
1963
Male, age 80, left hemisphere
104.7
2113
Female, age 91, right hemisphere
88.3
1940
Female, age 85, left hemisphere
87.6
2437
Female, age 94, left hemisphere
77.4
1892
Male, age 76, both hemispheres
53.4
Hippocampus, CA3 nTPM: 82.6
1891
Female, age 85, both hemispheres
122.6
2436
Male, age 74, both hemispheres
116.9
2620
Female, age 94, left hemisphere
73.2
2861
Female, age 67, both hemispheres
72.7
1867
Male, age 76, both hemispheres
58.5
2137
Male, age 80, left hemisphere
51.5
Parahippocampal cortex nTPM: 74.4
2250
Female, age 67, right hemisphere
96.5
1933
Female, age 85, both hemispheres
83.1
2692
Male, age 74, both hemispheres
82.8
2693
Female, age 94, both hemispheres
76.7
2622
Female, age 67, right hemisphere
76.2
1990
Female, age 91, right hemisphere
75.4
2532
Female, age 72, left hemisphere
70.8
1850
Male, age 80, both hemispheres
70.1
2245
Female, age 91, both hemispheres
62.7
2018
Male, age 76, both hemispheres
49.6
Perirhinal gyrus nTPM: 62.5
1841
Female, age 85, right hemisphere
69.5
2848
Male, age 76, right hemisphere
63.6
1847
Female, age 91, left hemisphere
62.6
1794
Male, age 80, right hemisphere
59.7
2521
Female, age 94, right hemisphere
57.1
Subiculum nTPM: 89.1
2042
Male, age 76, both hemispheres
107.9
2729
Female, age 91, right hemisphere
99.1
1977
Female, age 85, both hemispheres
96.5
1901
Male, age 80, both hemispheres
87.6
2619
Male, age 74, both hemispheres
85.9
2438
Female, age 94, left hemisphere
57.9
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
39.4
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 39.4
Samples: 197
Max nTPM: 95.6
Min nTPM: 10.7
Std nTPM: 15.4
Median nTPM: 37.3
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
95.6
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
87.2
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
84.7
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
80.1
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
79.6
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
77.3
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
72.0
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
71.1
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
70.8
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
70.6
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
68.3
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
68.0
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
66.6
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
66.2
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
64.8
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
64.8
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
63.9
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
63.2
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
58.3
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
58.1
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
58.0
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
57.6
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
57.0
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
56.9
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
56.9
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
55.8
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
55.2
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
54.8
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
54.1
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
54.0
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
53.3
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
53.1
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
52.9
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
52.5
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
52.4
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
52.1
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
51.9
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
51.8
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
51.3
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
51.3
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
51.2
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
51.2
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
51.1
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
51.0
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
51.0
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
50.8
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
50.7
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
49.4
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
49.3
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
48.4
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
47.8
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
47.6
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
46.9
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
46.8
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
46.8
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
46.6
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
46.4
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
45.8
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
45.4
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
45.1
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
44.7
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
44.6
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
44.5
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
44.1
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
44.0
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
43.8
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
43.6
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
43.6
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
43.4
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
43.4
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
43.1
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
42.3
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
42.1
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
42.0
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
41.7
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
41.5
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
41.5
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
40.4
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
40.0
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
40.0
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
39.8
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
39.7
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
39.6
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
39.4
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
39.2
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
39.2
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
39.0
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
38.7
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
38.7
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
38.5
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
38.5
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
38.4
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
38.0
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
38.0
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
38.0
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
37.7
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
37.6
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
37.6
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
37.3
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
36.8
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
36.1
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
35.7
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
35.6
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
35.3
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
35.3
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
35.2
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
34.9
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
34.9
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
34.7
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
34.6
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
34.6
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
34.5
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
34.4
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
34.3
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
34.2
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
34.0
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
33.7
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
33.5
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
33.4
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
33.3
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
33.0
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
32.9
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
32.9
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
32.8
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
32.8
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
32.7
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
32.5
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
31.8
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
31.8
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
31.7
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
31.4
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
31.2
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
30.7
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
30.6
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
30.3
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
30.3
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
30.2
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
30.2
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
29.8
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
29.8
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
29.7
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
29.5
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
29.4
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
29.2
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
29.0
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
28.6
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
28.6
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
28.3
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
28.1
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
27.7
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
27.6
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
27.6
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
27.6
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
27.5
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
27.5
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
27.4
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
27.1
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
27.1
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
27.1
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
26.6
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
26.4
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
26.4
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
26.1
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
26.1
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
25.3
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
25.1
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
25.0
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
24.4
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
24.4
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
24.3
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
24.1
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
23.9
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
23.8
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
23.8
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
23.6
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
22.9
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
22.7
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
22.6
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
22.3
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
21.7
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
21.1
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
21.0
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
19.5
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
19.5
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
19.3
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
18.9
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
18.7
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
18.5
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
18.3
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
17.2
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
17.1
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
14.6
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
14.5
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
13.2
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
12.6
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
11.3
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
10.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
156.7
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 155.4
Samples: 4
Max nTPM: 167.9
Min nTPM: 144.0
Sample A
Male
167.9
Sample B
Male
144.0
Sample C
Female
162.8
Sample D
Female
146.7
Hippocampal formation nTPM: 156.7
Samples: 4
Max nTPM: 175.4
Min nTPM: 147.1
Sample A
Male
175.4
Sample B
Male
147.1
Sample C
Female
147.4
Sample D
Female
157.0
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.