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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TKFC is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
65.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
597.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
573.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
572.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
560.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
510.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
471.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
380.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
356.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
353.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
318.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
299.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
287.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
274.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
268.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
267.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
245.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
239.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
237.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
234.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
232.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
231.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
225.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
224.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
218.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
212.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
185.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
177.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
171.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
168.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
166.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
163.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
162.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
160.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
159.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
157.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
156.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
156.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
156.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
155.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
155.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
145.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
140.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
138.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
134.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
131.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
130.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
128.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
128.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
127.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
124.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
121.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
115.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
114.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
114.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
113.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
113.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
111.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
110.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
110.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
109.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
105.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
105.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
105.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
105.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
104.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
104.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
103.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
103.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
102.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
92.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
90.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
90.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
87.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
87.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
84.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
84.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
83.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
83.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
82.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
82.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
82.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
82.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
79.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
79.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
77.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
77.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
76.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
75.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
75.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
75.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
74.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
73.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
72.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
70.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
69.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
69.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
68.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
68.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
68.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
68.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
67.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
66.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
66.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
66.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
66.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
64.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
63.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
63.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
63.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
62.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
61.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
60.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
60.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
60.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
60.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
59.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
57.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
57.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
57.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
57.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
57.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
56.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
54.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
54.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
53.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
53.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
53.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
52.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
52.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
52.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
51.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
50.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
50.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
50.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
50.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
48.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
48.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
48.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
48.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
48.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
47.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
47.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
46.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
46.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
45.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
44.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
43.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
43.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
43.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
43.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
42.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
41.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
41.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
40.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
39.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
39.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
38.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
38.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
37.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
37.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
37.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
37.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
37.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
36.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
36.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
36.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
35.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
35.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
35.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
35.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
35.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
35.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
35.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
34.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
34.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
34.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
34.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
34.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
33.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
33.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
33.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
32.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
32.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
32.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
31.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
31.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
31.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
31.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
31.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
30.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
30.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
30.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
29.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
28.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
28.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
28.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
28.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
28.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
28.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
28.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
27.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
27.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
27.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
27.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
27.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
27.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
27.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
27.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
27.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
26.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
26.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
26.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
26.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
26.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
26.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
26.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
26.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
26.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
26.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
26.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
25.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
25.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
25.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
24.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
24.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
24.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
24.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
24.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
24.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
24.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
24.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
23.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
23.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
23.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
23.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
23.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
23.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
23.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
23.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
22.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
22.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
22.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
22.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
22.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
22.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
22.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
21.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
21.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
21.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
21.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
20.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
20.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
20.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
20.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
20.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
20.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
20.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
20.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
20.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
20.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
20.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
20.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
20.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
19.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
19.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
19.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
19.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
19.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
18.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
18.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
18.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
18.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
17.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
17.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
17.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
17.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
16.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
16.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
16.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
16.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
16.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
16.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
15.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
15.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
15.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
15.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
15.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
15.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
15.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
15.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
14.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
14.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
14.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
14.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
14.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
14.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
14.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
14.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
14.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
13.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
13.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
13.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
13.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
12.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
12.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
12.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
11.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
11.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
11.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
11.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
11.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
11.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
11.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
10.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
10.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
10.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
10.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
10.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
10.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
10.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
9.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
9.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
9.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
9.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
9.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
9.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
9.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
8.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
8.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
8.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
8.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
8.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
8.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
7.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
7.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
6.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
6.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
6.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
5.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
5.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
5.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
5.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
4.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
3.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
162
Normal
1.5
466
Normal
1.4
172
Normal
1.4
222
Normal
1.3
785
Tumor
1.3
394
Normal
1.2
615
Tumor
1.2
756
Normal
1.1
858
Normal
1.1
392
Normal
1.1
648
Normal
1.1
298
Normal
1.0
436
Normal
1.0
912
Normal
1.0
513
Tumor
1.0
128
Normal
0.9
414
Normal
0.9
462
Normal
0.9
342
Normal
0.9
714
Normal
0.9
738
Normal
0.9
484
Normal
0.8
464
Normal
0.8
196
Normal
0.8
664
Normal
0.8
278
Normal
0.8
882
Normal
0.8
232
Normal
0.8
698
Normal
0.8
862
Normal
0.8
824
Normal
0.8
186
Normal
0.8
132
Normal
0.8
627
Tumor
0.8
111
Normal
0.8
138
Normal
0.8
452
Normal
0.8
432
Normal
0.8
1026
Normal
0.8
786
Normal
0.8
358
Normal
0.8
938
Normal
0.7
422
Normal
0.7
446
Normal
0.7
534
Normal
0.7
136
Normal
0.7
864
Normal
0.7
428
Normal
0.7
742
Normal
0.7
964
Normal
0.7
666
Normal
0.7
356
Normal
0.7
472
Normal
0.7
482
Normal
0.7
564
Normal
0.7
376
Normal
0.7
728
Normal
0.7
618
Normal
0.7
258
Normal
0.7
1022
Normal
0.6
148
Normal
0.6
515
Tumor
0.6
746
Normal
0.6
314
Normal
0.6
396
Normal
0.6
1032
Normal
0.6
723
Tumor
0.6
616
Normal
0.6
424
Normal
0.6
456
Normal
0.6
818
Normal
0.6
214
Normal
0.6
426
Normal
0.6
328
Normal
0.6
365
Tumor
0.5
868
Normal
0.5
388
Normal
0.5
366
Normal
0.5
114
Normal
0.5
455
Tumor
0.5
1027
Tumor
0.5
416
Normal
0.5
518
Normal
0.5
448
Normal
0.5
866
Normal
0.5
146
Normal
0.5
816
Normal
0.5
956
Normal
0.5
142
Normal
0.5
722
Normal
0.5
488
Normal
0.5
628
Normal
0.5
1016
Normal
0.5
1046
Normal
0.4
922
Normal
0.4
412
Normal
0.4
926
Normal
0.4
354
Normal
0.4
465
Tumor
0.4
386
Normal
0.4
952
Normal
0.4
514
Normal
0.4
958
Normal
0.4
494
Normal
0.4
914
Normal
0.4
188
Normal
0.4
662
Normal
0.4
272
Normal
0.3
1014
Normal
0.3
636
Normal
0.3
528
Normal
0.3
924
Normal
0.3
124
Normal
0.3
978
Normal
0.3
744
Normal
0.3
982
Normal
0.3
332
Normal
0.3
468
Normal
0.3
368
Normal
0.3
546
Normal
0.3
716
Normal
0.3
312
Normal
0.3
572
Normal
0.3
362
Normal
0.3
976
Normal
0.3
262
Normal
0.3
516
Normal
0.3
755
Tumor
0.3
642
Normal
0.3
878
Normal
0.3
1042
Normal
0.3
361
Tumor
0.3
474
Normal
0.3
228
Normal
0.3
968
Normal
0.2
574
Normal
0.2
286
Normal
0.2
884
Normal
0.2
966
Normal
0.2
944
Normal
0.2
737
Tumor
0.2
461
Tumor
0.2
284
Normal
0.2
445
Tumor
0.2
955
Tumor
0.2
874
Normal
0.2
364
Normal
0.1
126
Normal
0.1
852
Normal
0.1
696
Normal
0.1
568
Normal
0.1
481
Tumor
0.1
218
Normal
0.1
563
Tumor
0.1
918
Normal
0.1
867
Tumor
0.0
344
Normal
0.0
526
Normal
0.0
357
Tumor
0.0
921
Tumor
0.0
171
Tumor
0.0
352
Normal
0.0
925
Tumor
-0.1
813
Tumor
-0.1
384
Normal
-0.1
224
Normal
-0.1
558
Normal
-0.1
1044
Normal
-0.1
434
Normal
-0.1
778
Normal
-0.2
863
Tumor
-0.2
137
Tumor
-0.2
1043
Tumor
-0.2
686
Normal
-0.2
192
Normal
-0.2
915
Tumor
-0.2
421
Tumor
-0.2
554
Normal
-0.2
916
Normal
-0.2
953
Tumor
-0.2
1045
Tumor
-0.2
478
Normal
-0.2
727
Tumor
-0.2
672
Normal
-0.3
327
Tumor
-0.3
954
Normal
-0.3
423
Tumor
-0.3
212
Normal
-0.3
268
Normal
-0.3
1028
Normal
-0.3
444
Normal
-0.3
451
Tumor
-0.3
393
Tumor
-0.4
297
Tumor
-0.4
533
Tumor
-0.4
141
Tumor
-0.4
881
Tumor
-0.4
984
Normal
-0.4
477
Tumor
-0.4
815
Tumor
-0.5
271
Tumor
-0.5
1021
Tumor
-0.5
981
Tumor
-0.5
975
Tumor
-0.6
498
Normal
-0.6
741
Tumor
-0.6
567
Tumor
-0.6
217
Tumor
-0.6
492
Normal
-0.6
415
Tumor
-0.6
524
Normal
-0.7
145
Tumor
-0.7
471
Tumor
-0.7
127
Tumor
-0.7
277
Tumor
-0.7
857
Tumor
-0.7
391
Tumor
-0.7
483
Tumor
-0.7
536
Normal
-0.8
431
Tumor
-0.8
977
Tumor
-0.8
814
Normal
-0.8
161
Tumor
-0.8
721
Tumor
-0.8
185
Tumor
-0.8
353
Tumor
-0.9
538
Normal
-0.9
131
Tumor
-0.9
195
Tumor
-0.9
443
Tumor
-0.9
911
Tumor
-1.0
517
Tumor
-1.0
231
Tumor
-1.0
261
Tumor
-1.0
433
Tumor
-1.0
877
Tumor
-1.0
413
Tumor
-1.0
873
Tumor
-1.0
435
Tumor
-1.1
883
Tumor
-1.1
823
Tumor
-1.1
777
Tumor
-1.1
641
Tumor
-1.1
635
Tumor
-1.1
411
Tumor
-1.2
1031
Tumor
-1.2
865
Tumor
-1.2
187
Tumor
-1.2
221
Tumor
-1.3
1041
Tumor
-1.3
1015
Tumor
-1.3
1025
Tumor
-1.3
191
Tumor
-1.3
341
Tumor
-1.3
387
Tumor
-1.3
447
Tumor
-1.4
861
Tumor
-1.4
913
Tumor
-1.4
963
Tumor
-1.4
743
Tumor
-1.4
617
Tumor
-1.4
223
Tumor
-1.4
1013
Tumor
-1.5
553
Tumor
-1.5
685
Tumor
-1.5
467
Tumor
-1.5
527
Tumor
-1.5
213
Tumor
-1.5
113
Tumor
-1.5
112
Tumor
-1.5
917
Tumor
-1.5
257
Tumor
-1.6
463
Tumor
-1.6
331
Tumor
-1.6
665
Tumor
-1.6
147
Tumor
-1.6
695
Tumor
-1.6
363
Tumor
-1.6
923
Tumor
-1.6
395
Tumor
-1.7
425
Tumor
-1.7
967
Tumor
-1.7
715
Tumor
-1.7
267
Tumor
-1.7
367
Tumor
-1.7
227
Tumor
-1.7
427
Tumor
-1.7
745
Tumor
-1.7
525
Tumor
-1.7
311
Tumor
-1.7
817
Tumor
-1.7
943
Tumor
-1.7
383
Tumor
-1.8
523
Tumor
-1.8
951
Tumor
-1.8
571
Tumor
-1.8
713
Tumor
-1.8
487
Tumor
-1.8
493
Tumor
-1.8
355
Tumor
-1.8
491
Tumor
-1.8
135
Tumor
-1.8
647
Tumor
-1.8
313
Tumor
-1.9
125
Tumor
-1.9
473
Tumor
-1.9
375
Tumor
-1.9
343
Tumor
-2.0
351
Tumor
-2.0
123
Tumor
-2.0
385
Tumor
-2.0
557
Tumor
-2.0
851
Tumor
-2.1
965
Tumor
-2.1
983
Tumor
-2.1
671
Tumor
-2.1
724
Normal
-2.1
697
Tumor
-2.1
663
Tumor
-2.1
283
Tumor
-2.2
957
Tumor
-2.2
537
Tumor
-2.2
573
Tumor
-2.2
661
Tumor
-2.2
285
Tumor
-2.3
545
Tumor
-2.3
937
Tumor
-2.3
497
Tumor
-2.4
211
Tumor
-2.4
535
Tumor
-2.5
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.