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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GLYAT is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
65.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
412.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
397.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
283.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
283.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
278.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
272.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
271.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
262.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
258.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
258.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
255.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
255.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
237.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
236.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
231.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
228.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
224.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
223.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
222.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
215.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
214.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
208.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
206.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
205.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
201.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
200.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
199.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
192.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
188.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
185.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
184.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
183.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
181.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
181.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
173.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
172.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
171.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
170.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
169.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
167.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
167.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
165.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
161.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
156.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
155.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
155.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
152.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
152.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
152.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
151.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
150.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
148.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
147.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
146.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
139.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
139.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
139.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
138.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
137.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
137.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
137.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
135.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
134.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
133.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
133.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
131.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
130.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
130.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
129.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
129.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
128.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
126.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
124.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
124.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
124.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
124.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
123.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
123.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
122.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
122.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
121.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
120.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
119.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
117.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
115.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
109.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
108.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
106.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
104.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
104.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
104.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
103.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
102.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
102.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
101.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
100.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
99.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
98.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
96.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
95.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
95.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
95.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
95.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
93.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
93.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
91.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
91.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
91.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
91.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
90.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
89.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
89.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
88.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
86.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
82.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
81.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
80.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
80.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
78.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
78.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
77.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
77.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
76.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
75.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
73.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
71.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
71.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
69.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
69.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
68.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
67.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
67.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
66.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
65.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
65.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
64.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
63.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
63.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
62.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
60.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
60.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
60.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
59.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
59.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
58.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
58.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
57.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
57.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
57.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
56.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
56.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
55.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
55.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
54.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
53.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
52.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
52.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
51.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
50.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
47.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
47.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
47.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
47.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
46.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
46.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
46.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
45.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
44.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
43.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
43.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
43.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
41.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
40.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
39.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
37.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
37.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
37.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
36.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
35.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
35.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
35.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
34.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
34.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
34.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
33.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
33.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
32.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
32.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
31.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
31.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
30.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
30.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
30.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
30.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
29.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
29.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
29.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
28.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
28.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
28.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
27.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
27.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
27.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
27.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
26.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
26.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
25.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
24.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
24.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
23.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
23.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
23.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
22.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
22.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
21.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
21.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
21.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
21.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
20.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
19.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
19.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
18.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
18.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
18.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
17.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
17.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
17.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
15.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
15.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
15.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
14.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
14.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
13.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
13.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
13.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
12.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
12.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
12.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
12.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
11.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
11.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
11.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
11.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
10.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
10.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
9.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
9.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
8.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
8.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
8.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
8.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
7.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
7.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
7.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
7.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
7.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
7.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
7.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
6.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
6.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
6.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
6.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
5.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
5.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
5.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
5.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
5.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
5.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
5.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
5.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
4.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
4.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
4.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
4.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
3.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
3.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
2.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
2.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
2.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
2.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
2.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
1.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
1.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
1.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
1.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
1.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
1.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
1.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
1.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
1.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
1.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
1.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
1.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
1.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
0.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
0.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
0.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
0.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
0.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
0.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
0.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
0.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
0.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
0.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
0.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
0.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
0.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
0.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
0.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
0.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
0.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
0.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
0.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
0.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
0.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GLYAT is potential prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
56.9
Number of samples
231
Samples
Sample
Description
TPM
DO45129
0 years, male, NA, stage:3, alive, 1470 days
289.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
270.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
259.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
256.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
249.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
216.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
211.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
190.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
188.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
186.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
179.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
179.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
178.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
173.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
171.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
170.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
169.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
165.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
164.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
163.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
161.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
158.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
157.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
151.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
150.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
145.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
138.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
134.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
133.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
132.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
127.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
126.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
125.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
123.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
120.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
118.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
118.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
117.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
117.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
117.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
117.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
116.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
112.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
111.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
107.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
107.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
106.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
105.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
102.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
101.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
101.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
96.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
95.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
94.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
92.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
91.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
88.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
88.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
87.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
86.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
85.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
85.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
84.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
81.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
81.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
80.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
78.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
77.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
73.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
73.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
72.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
72.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
71.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
71.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
70.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
70.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
70.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
69.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
68.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
67.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
66.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
65.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
64.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
64.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
63.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
63.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
62.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
60.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
59.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
58.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
56.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
55.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
55.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
54.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
53.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
52.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
52.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
52.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
52.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
51.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
49.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
48.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
48.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
48.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
46.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
45.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
45.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
44.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
44.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
43.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
42.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
42.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
41.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
41.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
40.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
40.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
39.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
35.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
33.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
30.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
30.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
29.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
29.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
29.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
28.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
27.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
26.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
25.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
25.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
24.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
23.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
23.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
23.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
22.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
21.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
19.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
19.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
18.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
17.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
16.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
16.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
15.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
15.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
15.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
15.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
15.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
15.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
14.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
13.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
13.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
12.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
11.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
11.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
10.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
10.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
9.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
9.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
9.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
9.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
9.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
8.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
8.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
8.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
8.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
8.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
7.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
7.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
7.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
6.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
6.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
6.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
6.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
5.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
5.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
5.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
5.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
4.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
4.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
3.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
3.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
3.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
3.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
3.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
3.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
3.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
2.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
2.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
2.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
2.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
1.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
1.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
1.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
1.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
1.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
1.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
1.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
0.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
0.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
0.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
0.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
0.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
0.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
0.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
0.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
0.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
0.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
0.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
0.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
0.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
0.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
0.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
0.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
0.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
0.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
0.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
0.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
0.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
0.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
0.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
0.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
627
Tumor
1.7
342
Normal
1.4
452
Normal
1.3
462
Normal
1.2
648
Normal
1.2
128
Normal
1.2
1046
Normal
1.2
698
Normal
1.2
742
Normal
1.2
186
Normal
1.1
172
Normal
1.1
332
Normal
1.1
862
Normal
1.1
196
Normal
1.1
568
Normal
1.1
436
Normal
1.1
818
Normal
1.1
426
Normal
1.1
744
Normal
1.0
448
Normal
1.0
636
Normal
1.0
746
Normal
1.0
723
Tumor
1.0
314
Normal
1.0
132
Normal
1.0
1022
Normal
0.9
786
Normal
0.9
376
Normal
0.9
756
Normal
0.9
664
Normal
0.9
258
Normal
0.9
465
Tumor
0.9
618
Normal
0.9
572
Normal
0.9
278
Normal
0.9
564
Normal
0.9
358
Normal
0.9
356
Normal
0.9
222
Normal
0.9
738
Normal
0.9
714
Normal
0.9
1016
Normal
0.9
824
Normal
0.9
488
Normal
0.9
432
Normal
0.9
298
Normal
0.9
424
Normal
0.9
924
Normal
0.8
366
Normal
0.8
394
Normal
0.8
1032
Normal
0.8
938
Normal
0.8
388
Normal
0.8
344
Normal
0.8
162
Normal
0.8
232
Normal
0.8
414
Normal
0.8
412
Normal
0.8
666
Normal
0.8
428
Normal
0.8
396
Normal
0.8
354
Normal
0.8
914
Normal
0.8
546
Normal
0.8
1026
Normal
0.8
214
Normal
0.8
922
Normal
0.8
464
Normal
0.7
466
Normal
0.7
148
Normal
0.7
616
Normal
0.7
446
Normal
0.7
534
Normal
0.7
628
Normal
0.7
716
Normal
0.7
422
Normal
0.7
912
Normal
0.7
468
Normal
0.7
816
Normal
0.7
352
Normal
0.7
944
Normal
0.7
884
Normal
0.7
882
Normal
0.7
111
Normal
0.7
662
Normal
0.7
878
Normal
0.7
858
Normal
0.6
114
Normal
0.6
142
Normal
0.6
866
Normal
0.6
982
Normal
0.6
472
Normal
0.6
456
Normal
0.6
146
Normal
0.6
262
Normal
0.6
864
Normal
0.6
272
Normal
0.6
328
Normal
0.6
482
Normal
0.6
138
Normal
0.6
868
Normal
0.6
728
Normal
0.6
362
Normal
0.5
964
Normal
0.5
1014
Normal
0.5
642
Normal
0.5
722
Normal
0.5
494
Normal
0.5
364
Normal
0.5
286
Normal
0.5
984
Normal
0.5
574
Normal
0.5
416
Normal
0.5
312
Normal
0.5
218
Normal
0.5
136
Normal
0.5
672
Normal
0.5
696
Normal
0.5
434
Normal
0.5
1044
Normal
0.5
484
Normal
0.4
528
Normal
0.4
926
Normal
0.4
976
Normal
0.4
558
Normal
0.4
554
Normal
0.4
686
Normal
0.4
526
Normal
0.4
518
Normal
0.4
978
Normal
0.4
966
Normal
0.4
615
Tumor
0.4
124
Normal
0.4
911
Tumor
0.4
423
Tumor
0.4
368
Normal
0.4
968
Normal
0.4
1045
Tumor
0.4
918
Normal
0.4
874
Normal
0.4
228
Normal
0.4
852
Normal
0.3
392
Normal
0.3
474
Normal
0.3
956
Normal
0.3
954
Normal
0.3
126
Normal
0.3
778
Normal
0.3
212
Normal
0.3
284
Normal
0.2
1028
Normal
0.2
867
Tumor
0.2
952
Normal
0.2
188
Normal
0.2
384
Normal
0.2
1042
Normal
0.2
981
Tumor
0.2
113
Tumor
0.2
386
Normal
0.1
955
Tumor
0.1
925
Tumor
0.1
514
Normal
0.0
516
Normal
0.0
192
Normal
0.0
538
Normal
0.0
224
Normal
0.0
915
Tumor
0.0
268
Normal
0.0
137
Tumor
0.0
958
Normal
0.0
873
Tumor
-0.1
916
Normal
-0.1
444
Normal
-0.1
365
Tumor
-0.1
461
Tumor
-0.1
478
Normal
-0.2
361
Tumor
-0.3
1041
Tumor
-0.3
261
Tumor
-0.3
127
Tumor
-0.3
695
Tumor
-0.3
492
Normal
-0.3
741
Tumor
-0.3
435
Tumor
-0.4
145
Tumor
-0.4
513
Tumor
-0.4
498
Normal
-0.4
481
Tumor
-0.4
217
Tumor
-0.4
415
Tumor
-0.5
451
Tumor
-0.5
785
Tumor
-0.5
357
Tumor
-0.5
141
Tumor
-0.5
857
Tumor
-0.5
267
Tumor
-0.6
861
Tumor
-0.6
563
Tumor
-0.6
536
Normal
-0.7
393
Tumor
-0.7
353
Tumor
-0.7
313
Tumor
-0.7
515
Tumor
-0.7
433
Tumor
-0.7
913
Tumor
-0.7
161
Tumor
-0.7
721
Tumor
-0.7
524
Normal
-0.7
327
Tumor
-0.7
755
Tumor
-0.8
112
Tumor
-0.8
185
Tumor
-0.8
1015
Tumor
-0.8
477
Tumor
-0.8
715
Tumor
-0.8
863
Tumor
-0.9
421
Tumor
-0.9
195
Tumor
-0.9
447
Tumor
-0.9
533
Tumor
-1.0
445
Tumor
-1.0
231
Tumor
-1.0
1027
Tumor
-1.1
1013
Tumor
-1.1
823
Tumor
-1.1
617
Tumor
-1.1
171
Tumor
-1.1
297
Tumor
-1.2
943
Tumor
-1.2
953
Tumor
-1.2
341
Tumor
-1.2
814
Normal
-1.2
191
Tumor
-1.2
685
Tumor
-1.2
483
Tumor
-1.2
431
Tumor
-1.3
881
Tumor
-1.3
665
Tumor
-1.3
1043
Tumor
-1.4
917
Tumor
-1.4
851
Tumor
-1.4
187
Tumor
-1.4
343
Tumor
-1.4
877
Tumor
-1.5
413
Tumor
-1.5
331
Tumor
-1.5
571
Tumor
-1.5
883
Tumor
-1.5
777
Tumor
-1.5
977
Tumor
-1.5
491
Tumor
-1.5
963
Tumor
-1.5
463
Tumor
-1.5
257
Tumor
-1.5
635
Tumor
-1.5
713
Tumor
-1.5
557
Tumor
-1.6
663
Tumor
-1.6
737
Tumor
-1.6
427
Tumor
-1.6
383
Tumor
-1.6
277
Tumor
-1.6
411
Tumor
-1.6
123
Tumor
-1.6
125
Tumor
-1.6
213
Tumor
-1.7
443
Tumor
-1.7
487
Tumor
-1.7
311
Tumor
-1.7
745
Tumor
-1.7
641
Tumor
-1.7
221
Tumor
-1.8
467
Tumor
-1.8
355
Tumor
-1.8
937
Tumor
-1.8
375
Tumor
-1.8
391
Tumor
-1.8
135
Tumor
-1.8
351
Tumor
-1.8
567
Tumor
-1.8
147
Tumor
-1.8
387
Tumor
-1.9
975
Tumor
-1.9
517
Tumor
-1.9
363
Tumor
-1.9
425
Tumor
-1.9
865
Tumor
-1.9
227
Tumor
-1.9
455
Tumor
-1.9
573
Tumor
-1.9
493
Tumor
-1.9
923
Tumor
-2.0
813
Tumor
-2.0
473
Tumor
-2.0
367
Tumor
-2.0
815
Tumor
-2.0
983
Tumor
-2.0
131
Tumor
-2.0
527
Tumor
-2.1
1025
Tumor
-2.1
671
Tumor
-2.1
967
Tumor
-2.1
271
Tumor
-2.1
223
Tumor
-2.2
647
Tumor
-2.2
921
Tumor
-2.2
395
Tumor
-2.2
817
Tumor
-2.2
743
Tumor
-2.2
697
Tumor
-2.2
724
Normal
-2.2
545
Tumor
-2.2
553
Tumor
-2.2
471
Tumor
-2.2
285
Tumor
-2.2
1021
Tumor
-2.2
727
Tumor
-2.3
537
Tumor
-2.3
385
Tumor
-2.3
1031
Tumor
-2.3
525
Tumor
-2.4
957
Tumor
-2.4
523
Tumor
-2.4
661
Tumor
-2.4
965
Tumor
-2.5
211
Tumor
-2.5
497
Tumor
-2.5
283
Tumor
-2.5
535
Tumor
-2.6
951
Tumor
-2.7
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
