HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Low
Mouse brain, Intensity
Hippocampal formationi 		47.531
RNA expressioni
Consensus:23.2 nTPM
HPA Brain:14.7 nTPM
GTEx:23.2 nTPM
FANTOM5:20.8 Scaled Tags Per Million
Pig:10.8 nTPM
Mouse:74.9 nTPM
Allen mouse:2.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA021305Antibody CAB004559
Glial cells MediumMedium
Neuronal cells LowLow





HIPPOCAMPAL FORMATION - Mouse brain profilei , antibody HPA021305
Hippocampal formation mean intensity 47.531
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 47.531
Molecular layer of the dentate gyrus 30.278
Granular dentate gyrus 33.684
CA1 - oriens layer 15.821
CA1 - pyramidal layer 30.114
CA1 - radiatum layer 23.804
CA2 - oriens layer 12.434
CA2 - pyramidal layer 18.810
CA2 - radiatum layer 21.955
CA3 - oriens layer 10.514
CA3 - pyramidal layer 21.717
CA3 - radiatum layer 18.979
Stratum lucidum 19.240
Lacunosum moleculare 26.584
Subiculum 11.707

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 14.7
Sample id Sample description nTPM
Hippocampus
nTPM: 14.7
2621 Female, age 67, right hemisphere 23.9
1898 Male, age 80, left hemisphere 15.6
1855 Male, age 76, left hemisphere 15.3
1911 Female, age 85, right hemisphere 13.8
2529 Female, age 94, left hemisphere 10.5
2148 Female, age 91, left hemisphere 9.2
Dentate gyrus
nTPM: 9.6
2010 Male, age 76, both hemispheres 15.3
2246 Female, age 85, both hemispheres 9.9
1927 Female, age 91, both hemispheres 9.4
2531 Female, age 67, both hemispheres 8.3
2528 Male, age 74, both hemispheres 8.2
2530 Female, age 94, left hemisphere 6.6
Entorhinal gyrus
nTPM: 8.1
2117 Female, age 91, right hemisphere 11.3
1787 Male, age 76, left hemisphere 10.1
2613 Female, age 94, left hemisphere 7.6
1938 Female, age 85, left hemisphere 7.5
2764 Male, age 80, right hemisphere 7.0
2686 Male, age 75, right hemisphere 5.0
Hippocampus, CA1
nTPM: 10.3
2045 Male, age 76, both hemispheres 15.0
2082 Female, age 91, right hemisphere 12.3
1873 Female, age 85, both hemispheres 10.0
2749 Male, age 80, left hemisphere 7.9
2527 Male, age 74, both hemispheres 6.5
Hippocampus, CA2
nTPM: 11.7
1940 Female, age 85, left hemisphere 19.2
1963 Male, age 80, left hemisphere 11.4
2113 Female, age 91, right hemisphere 11.4
1892 Male, age 76, both hemispheres 11.3
2437 Female, age 94, left hemisphere 9.9
2249 Male, age 74, both hemispheres 6.9
Hippocampus, CA3
nTPM: 8.3
1867 Male, age 76, both hemispheres 13.8
1891 Female, age 85, both hemispheres 10.3
2861 Female, age 67, both hemispheres 8.7
2137 Male, age 80, left hemisphere 7.7
2436 Male, age 74, both hemispheres 7.7
2620 Female, age 94, left hemisphere 1.6
Parahippocampal cortex
nTPM: 10.2
2018 Male, age 76, both hemispheres 23.5
2250 Female, age 67, right hemisphere 17.4
2693 Female, age 94, both hemispheres 12.0
2245 Female, age 91, both hemispheres 9.9
1850 Male, age 80, both hemispheres 8.0
2532 Female, age 72, left hemisphere 7.1
1933 Female, age 85, both hemispheres 6.4
2692 Male, age 74, both hemispheres 6.2
1990 Female, age 91, right hemisphere 5.9
2622 Female, age 67, right hemisphere 5.4
Perirhinal gyrus
nTPM: 8.3
2521 Female, age 94, right hemisphere 12.3
1841 Female, age 85, right hemisphere 8.0
1847 Female, age 91, left hemisphere 7.8
2848 Male, age 76, right hemisphere 7.0
1794 Male, age 80, right hemisphere 6.3
Subiculum
nTPM: 10.8
2042 Male, age 76, both hemispheres 15.0
2729 Female, age 91, right hemisphere 14.9
1901 Male, age 80, both hemispheres 11.2
2438 Female, age 94, left hemisphere 9.0
2619 Male, age 74, both hemispheres 8.4
1977 Female, age 85, both hemispheres 6.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 23.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 23.2
Samples: 197

Max nTPM: 86.3
Min nTPM: 2.0
Std nTPM: 15.4
Median nTPM: 19.0
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 86.3
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 84.5
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 79.1
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 70.5
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 70.0
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 66.6
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 60.2
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 58.7
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 57.9
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 56.1
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 55.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 20.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 20.8
FF:10153-102I9 76 years, female 29.2
FF:10169-103B7 60 years, female 12.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 10.8
Pig sample Sample description nTPM
Subiculum
nTPM: 9.8
Samples: 4

Max nTPM: 12.2
Min nTPM: 8.2
Sample A Female 12.2
Sample B Female 9.4
Sample C Male 8.2
Sample D Male 9.5
Dorsal hippocampus
nTPM: 10.8
Samples: 4

Max nTPM: 13.1
Min nTPM: 8.4
Sample A Female 12.6
Sample B Female 9.0
Sample C Male 13.1
Sample D Male 8.4
Entorhinal cortex
nTPM: 7.4
Samples: 4

Max nTPM: 8.3
Min nTPM: 6.3
Sample A Female 7.4
Sample B Female 8.3
Sample C Male 7.6
Sample D Male 6.3
Ventral hippocampus
nTPM: 10.1
Samples: 4

Max nTPM: 10.7
Min nTPM: 9.7
Sample A Female 9.8
Sample B Female 9.7
Sample C Male 10.0
Sample D Male 10.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 74.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 68.6
Samples: 4

Max nTPM: 72.1
Min nTPM: 66.0
Sample A Male 70.0
Sample B Male 66.0
Sample C Female 72.1
Sample D Female 66.4
Hippocampal formation
nTPM: 74.9
Samples: 4

Max nTPM: 83.0
Min nTPM: 65.4
Sample A Male 83.0
Sample B Male 65.4
Sample C Female 75.5
Sample D Female 75.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 2.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.2
71377743 Antisense, RP_050510_01_H05, Mouse strain C57BL/6J (56 days, male) 3.0
74511849 Antisense, RP_060220_03_B10, Mouse strain C57BL/6J (56 days, male) 1.4

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