MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:3.2 nTPM
HPA Brain:11.4 nTPM
GTEx:3.2 nTPM
FANTOM5:0.3 Scaled Tags Per Million
Pig:25.5 nTPM
Mouse:0.0 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 11.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 6.5
1833 Male, age 53, unknown 9.1
1830 Male, age 51, unknown 7.7
1870 Female, age 42, unknown 7.7
2828 Female, age 72, unknown 7.7
2586 Male, age 75, left hemisphere 7.3
2019 Male, age 18, unknown 6.9
1827 Male, age 72, unknown 6.8
2219 Male, age 76, both hemispheres 4.6
2666 Male, age 74, left hemisphere 3.6
2411 Female, age 72, unknown 3.5
Dorsal raphe nucleus
nTPM: 5.8
1828 Male, age 53, unknown 9.2
2016 Female, age 72, unknown 6.8
2047 Male, age 72, unknown 5.8
2750 Male, age 76, both hemispheres 4.2
2298 Female, age 72, unknown 2.8
Inferior colliculus
nTPM: 11.4
2849 Male, age 72, unknown 15.6
1848 Female, age 42, unknown 14.1
2097 Female, age 72, unknown 8.7
1890 Male, age 53, unknown 7.0
Median raphe nucleus
nTPM: 7.3
2220 Male, age 76, midline 7.3
Periaquaductal grey, anterior
nTPM: 9.5
2502 Female, age 75, unknown 12.6
1947 Male, age 18, unknown 8.1
1795 Male, age 51, unknown 7.8
Periaquaductal grey, dorsal
nTPM: 11.1
2850 Male, age 76, both hemispheres 14.2
1840 Male, age 53, unknown 11.7
2464 Female, age 72, unknown 10.8
1831 Male, age 72, unknown 7.8
Periaquaductal grey, lateral
nTPM: 11.0
2140 Male, age 76, both hemispheres 17.3
2053 Male, age 18, unknown 9.4
2272 Male, age 74, both hemispheres 6.4
Pretectal area
nTPM: 10.2
2667 Female, age 75, unknown 17.2
1817 Female, age 42, unknown 16.4
2316 Male, age 76, right hemisphere 13.3
1815 Male, age 53, unknown 10.5
1816 Male, age 51, unknown 10.4
1944 Female, age 72, unknown 10.2
2825 Male, age 18, unknown 7.9
2224 Female, age 72, unknown 7.6
2007 Male, age 72, unknown 7.2
2407 Male, age 75, both hemispheres 5.9
2273 Male, age 74, both hemispheres 5.7
Red nucleus
nTPM: 7.4
2823 Male, age 76, right hemisphere 11.3
1954 Female, age 42, unknown 9.5
1821 Female, age 72, unknown 9.2
2769 Male, age 72, unknown 9.0
2503 Female, age 72, unknown 8.2
2227 Male, age 72, unknown 7.6
2785 Male, age 18, unknown 7.6
2588 Male, age 74, left hemisphere 7.4
1904 Male, age 53, unknown 5.6
2584 Male, age 75, left hemisphere 5.1
1865 Male, age 51, unknown 4.9
2725 Female, age 75, unknown 3.4
Substantia nigra
nTPM: 7.8
1916 Female, age 42, unknown 12.3
1851 Male, age 51, unknown 10.5
2699 Male, age 18, unknown 10.2
1889 Female, age 72, unknown 10.0
2409 Female, age 72, unknown 8.4
2241 Male, age 72, unknown 6.8
2590 Female, age 75, unknown 6.8
2665 Male, age 74, both hemispheres 4.7
1941 Male, age 53, unknown 4.0
2583 Male, age 75, right hemisphere 4.0
Superior colliculus
nTPM: 8.9
1796 Male, age 53, unknown 14.4
1839 Male, age 51, unknown 11.1
1895 Male, age 76, right hemisphere 10.9
2664 Male, age 75, both hemispheres 9.9
2087 Female, age 72, unknown 8.7
2261 Male, age 18, unknown 7.9
1995 Male, age 72, unknown 7.3
2668 Female, age 75, unknown 7.3
1913 Female, age 42, unknown 5.9
2587 Male, age 74, left hemisphere 5.6
Ventral tegmental area
nTPM: 6.5
1915 Female, age 42, unknown 11.3
2223 Female, age 72, unknown 6.8
2410 Female, age 72, unknown 6.6
2218 Male, age 76, both hemispheres 6.0
2021 Male, age 53, unknown 4.2
1942 Male, age 51, unknown 4.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 3.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 3.2
Samples: 139

Max nTPM: 53.3
Min nTPM: 0.0
Std nTPM: 6.2
Median nTPM: 1.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 53.3
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 31.9
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 29.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 15.9
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 15.7
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 15.6
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 11.5
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 11.2
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 9.7
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 8.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 8.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 0.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 0.3
FF:10158-103A5 76 years, female 0.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 25.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 15.1
Samples: 4

Max nTPM: 25.8
Min nTPM: 7.9
Sample A Female 17.7
Sample B Female 8.8
Sample C Male 7.9
Sample D Male 25.8
Midbrain
nTPM: 25.5
Samples: 4

Max nTPM: 62.2
Min nTPM: 3.9
Sample A Female 3.9
Sample B Female 15.0
Sample C Male 20.9
Sample D Male 62.2
Periaqueductal gray
nTPM: 9.0
Samples: 3

Max nTPM: 12.6
Min nTPM: 5.0
Sample B Female 12.6
Sample C Male 9.5
Sample D Male 5.0
Superior colliculi
nTPM: 21.9
Samples: 4

Max nTPM: 30.0
Min nTPM: 14.1
Sample A Female 30.0
Sample B Female 14.1
Sample C Male 26.1
Sample D Male 17.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 0.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
73712732 Antisense, RP_051206_02_C06, Mouse strain C57BL/6J (56 days, male) 0.0

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