MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.0 nTPM
HPA Brain:11.5 nTPM
GTEx:11.0 nTPM
FANTOM5:62.9 Scaled Tags Per Million
Pig:42.5 nTPM
Mouse:39.4 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 11.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 8.9
2019 Male, age 18, unknown 9.8
1870 Female, age 42, unknown 9.6
2219 Male, age 76, both hemispheres 9.3
1830 Male, age 51, unknown 9.2
2666 Male, age 74, left hemisphere 9.2
2828 Female, age 72, unknown 9.2
1833 Male, age 53, unknown 8.9
1827 Male, age 72, unknown 8.8
2411 Female, age 72, unknown 8.0
2586 Male, age 75, left hemisphere 6.8
Dorsal raphe nucleus
nTPM: 9.2
2750 Male, age 76, both hemispheres 10.9
2298 Female, age 72, unknown 9.1
2047 Male, age 72, unknown 9.0
1828 Male, age 53, unknown 8.7
2016 Female, age 72, unknown 8.3
Inferior colliculus
nTPM: 7.8
2097 Female, age 72, unknown 8.7
1848 Female, age 42, unknown 7.9
1890 Male, age 53, unknown 7.7
2849 Male, age 72, unknown 7.0
Median raphe nucleus
nTPM: 11.5
2220 Male, age 76, midline 11.5
Periaquaductal grey, anterior
nTPM: 9.9
2502 Female, age 75, unknown 10.0
1795 Male, age 51, unknown 9.9
1947 Male, age 18, unknown 9.7
Periaquaductal grey, dorsal
nTPM: 8.5
2850 Male, age 76, both hemispheres 9.7
1831 Male, age 72, unknown 9.0
2464 Female, age 72, unknown 7.9
1840 Male, age 53, unknown 7.4
Periaquaductal grey, lateral
nTPM: 9.0
2053 Male, age 18, unknown 10.0
2272 Male, age 74, both hemispheres 9.2
2140 Male, age 76, both hemispheres 7.8
Pretectal area
nTPM: 10.2
1817 Female, age 42, unknown 12.7
1816 Male, age 51, unknown 12.1
1944 Female, age 72, unknown 11.9
1815 Male, age 53, unknown 11.6
2007 Male, age 72, unknown 11.2
2224 Female, age 72, unknown 10.5
2273 Male, age 74, both hemispheres 9.3
2667 Female, age 75, unknown 9.1
2316 Male, age 76, right hemisphere 8.2
2825 Male, age 18, unknown 8.1
2407 Male, age 75, both hemispheres 7.7
Red nucleus
nTPM: 9.0
1821 Female, age 72, unknown 10.4
2725 Female, age 75, unknown 9.5
1904 Male, age 53, unknown 9.4
2503 Female, age 72, unknown 9.4
1954 Female, age 42, unknown 9.2
2823 Male, age 76, right hemisphere 9.2
1865 Male, age 51, unknown 9.0
2785 Male, age 18, unknown 9.0
2588 Male, age 74, left hemisphere 8.7
2769 Male, age 72, unknown 8.3
2227 Male, age 72, unknown 8.1
2584 Male, age 75, left hemisphere 7.9
Substantia nigra
nTPM: 8.9
1889 Female, age 72, unknown 11.0
1851 Male, age 51, unknown 9.2
2590 Female, age 75, unknown 9.1
1916 Female, age 42, unknown 9.0
2665 Male, age 74, both hemispheres 9.0
2241 Male, age 72, unknown 8.9
2409 Female, age 72, unknown 8.4
2699 Male, age 18, unknown 8.4
1941 Male, age 53, unknown 7.9
2583 Male, age 75, right hemisphere 7.9
Superior colliculus
nTPM: 9.4
1913 Female, age 42, unknown 11.2
1995 Male, age 72, unknown 10.8
2261 Male, age 18, unknown 10.0
2587 Male, age 74, left hemisphere 10.0
2087 Female, age 72, unknown 9.9
2668 Female, age 75, unknown 9.3
1796 Male, age 53, unknown 8.7
1839 Male, age 51, unknown 8.4
2664 Male, age 75, both hemispheres 7.9
1895 Male, age 76, right hemisphere 7.6
Ventral tegmental area
nTPM: 9.3
2021 Male, age 53, unknown 11.1
2218 Male, age 76, both hemispheres 9.7
2223 Female, age 72, unknown 9.4
1915 Female, age 42, unknown 8.9
2410 Female, age 72, unknown 8.6
1942 Male, age 51, unknown 7.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 11.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 11.0
Samples: 139

Max nTPM: 23.3
Min nTPM: 6.0
Std nTPM: 2.6
Median nTPM: 10.8
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 23.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 18.6
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 17.5
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 16.6
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 16.3
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 15.8
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 15.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 15.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 14.8
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 14.7
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 14.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 62.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 62.9
FF:10158-103A5 76 years, female 62.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 42.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 42.5
Samples: 4

Max nTPM: 53.3
Min nTPM: 32.0
Sample A Female 41.9
Sample B Female 42.8
Sample C Male 32.0
Sample D Male 53.3
Midbrain
nTPM: 40.9
Samples: 4

Max nTPM: 75.7
Min nTPM: 24.1
Sample A Female 75.7
Sample B Female 31.0
Sample C Male 32.8
Sample D Male 24.1
Periaqueductal gray
nTPM: 29.4
Samples: 3

Max nTPM: 31.3
Min nTPM: 28.2
Sample B Female 28.7
Sample C Male 28.2
Sample D Male 31.3
Superior colliculi
nTPM: 37.5
Samples: 4

Max nTPM: 41.1
Min nTPM: 34.8
Sample A Female 38.4
Sample B Female 41.1
Sample C Male 34.8
Sample D Male 35.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 39.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 39.4
Samples: 4

Max nTPM: 40.8
Min nTPM: 36.7
Sample A Male 40.8
Sample B Male 40.4
Sample C Female 36.7
Sample D Female 39.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
632495 Antisense, RP_040907_01_E03, Mouse strain C57BL/6J (56 days, male) 0.2

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