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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
115.5
nTPM
FANTOM5:
59.0
Scaled Tags Per Million
Pig:
27.5
nTPM
Allen mouse:
0.4
Expression energy
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
115.5
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 114.3
2301
Female, age 85, both hemispheres
131.9
2188
Female, age 91, both hemispheres
128.5
2090
Male, age 80, both hemispheres
109.1
1984
Male, age 76, both hemispheres
87.6
Dorsal cochlear nucleus nTPM: 101.4
2187
Female, age 91, both hemispheres
122.7
2802
Male, age 74, right hemisphere
111.5
2370
Male, age 61, both hemispheres
95.5
2378
Male, age 80, both hemispheres
95.5
2058
Male, age 76, both hemispheres
82.1
Dorsal tegmental nucleus nTPM: 82.6
2083
Male, age 80, both hemispheres
99.7
2326
Male, age 74, both hemispheres
94.0
1936
Male, age 76, left hemisphere
80.0
2358
Male, age 61, both hemispheres
56.4
Dorsolateral tegmental area nTPM: 85.0
2751
Female, age 85, both hemispheres
130.7
2654
Male, age 80, both hemispheres
96.5
2337
Male, age 61, both hemispheres
70.7
2360
Male, age 74, both hemispheres
69.2
2141
Male, age 76, both hemispheres
57.9
Kolliker-Fuse nucleus nTPM: 102.9
2793
Female, age 91, left hemisphere
136.9
2163
Male, age 80, both hemispheres
100.1
2315
Male, age 76, right hemisphere
71.6
Lateral lemniscal nuclei nTPM: 112.2
2320
Female, age 91, left hemisphere
117.5
2169
Male, age 76, both hemispheres
116.7
2453
Male, age 74, right hemisphere
114.5
2746
Female, age 85, left hemisphere
108.7
2036
Male, age 80, both hemispheres
103.5
Lateral parabrachial nucleus nTPM: 102.6
2792
Male, age 76, both hemispheres
128.6
2139
Female, age 85, right hemisphere
100.8
2013
Male, age 80, both hemispheres
96.0
2790
Male, age 61, both hemispheres
85.1
Lateral vestibular nucleus nTPM: 109.5
2184
Male, age 76, both hemispheres
113.4
2311
Male, age 80, both hemispheres
105.6
Locus coeruleus nTPM: 72.1
2317
Female, age 72, unknown
84.9
2014
Male, age 55, unknown
83.8
2720
Male, age 74, both hemispheres
74.5
2162
Male, age 80, both hemispheres
71.2
2788
Male, age 74, unknown
68.8
2123
Female, age 91, both hemispheres
67.3
1980
Male, age 76, both hemispheres
54.3
Medial parabrachial nucleus nTPM: 107.7
2170
Female, age 91, both hemispheres
141.0
2463
Female, age 85, right hemisphere
116.3
2854
Male, age 80, both hemispheres
104.4
2786
Male, age 76, both hemispheres
96.0
2156
Male, age 61, both hemispheres
80.7
Medial periolivary nuclei nTPM: 112.7
2458
Female, age 91, both hemispheres
115.3
2081
Male, age 80, both hemispheres
115.0
2063
Male, age 76, both hemispheres
113.3
2791
Male, age 74, right hemisphere
112.6
2171
Female, age 85, both hemispheres
107.2
Motor facial nucleus nTPM: 107.0
2126
Male, age 61, both hemispheres
116.1
2365
Male, age 74, right hemisphere
113.7
2795
Female, age 91, both hemispheres
111.5
2062
Male, age 76, both hemispheres
109.6
2697
Female, age 85, both hemispheres
99.2
2327
Male, age 80, both hemispheres
92.0
Motor trigeminal nucleus nTPM: 98.7
2560
Male, age 74, both hemispheres
114.7
2321
Female, age 91, both hemispheres
113.8
2079
Male, age 80, both hemispheres
96.7
2309
Male, age 76, both hemispheres
93.4
2335
Male, age 61, both hemispheres
74.9
Nuclei of the trapezoid body nTPM: 109.5
2368
Female, age 91, both hemispheres
121.3
2159
Male, age 61, both hemispheres
115.7
2166
Male, age 80, both hemispheres
105.9
1983
Male, age 76, both hemispheres
105.1
2735
Female, age 85, both hemispheres
99.5
Nucleus raphe magnus nTPM: 103.8
2051
Male, age 76, both hemispheres
120.0
2459
Female, age 91, both hemispheres
116.8
2455
Male, age 74, both hemispheres
107.6
2328
Male, age 80, both hemispheres
97.2
2160
Male, age 61, both hemispheres
91.6
2172
Female, age 85, both hemispheres
89.5
Paramedian reticular nucleus nTPM: 101.3
2050
Female, age 85, both hemispheres
111.0
2052
Male, age 76, both hemispheres
108.3
2057
Male, age 80, both hemispheres
103.6
2313
Male, age 61, both hemispheres
82.3
Pedunculopontine tegmental nucleus nTPM: 80.2
1921
Female, age 85, both hemispheres
85.8
2334
Male, age 80, both hemispheres
85.2
2338
Male, age 61, both hemispheres
69.7
Pontine nuclei nTPM: 114.5
2319
Female, age 91, both hemispheres
127.3
2454
Male, age 74, left hemisphere
126.8
1968
Male, age 76, left hemisphere
126.1
2109
Female, age 72, unknown
117.4
1863
Male, age 55, unknown
115.6
2787
Female, age 85, both hemispheres
102.2
2115
Male, age 80, left hemisphere
100.5
2727
Male, age 61, right hemisphere
99.8
Pontine raphe nucleus nTPM: 78.5
2122
Female, age 85, midline
91.6
2853
Male, age 76, midline
65.4
Posteroventral cochlear nucleus nTPM: 109.7
2135
Female, age 91, both hemispheres
141.1
2341
Male, age 80, both hemispheres
117.6
2070
Male, age 76, both hemispheres
105.5
2371
Male, age 61, both hemispheres
95.9
2752
Female, age 85, both hemispheres
88.4
Principal sensory trigeminal nucleus nTPM: 105.7
2367
Female, age 91, left hemisphere
133.6
2324
Male, age 76, both hemispheres
100.1
2158
Male, age 61, both hemispheres
94.7
2008
Male, age 80, left hemisphere
94.5
Reticular pontine nucleus, caudal nTPM: 114.0
2559
Male, age 74, both hemispheres
123.1
2457
Female, age 91, both hemispheres
120.8
2092
Male, age 76, both hemispheres
112.8
2332
Male, age 80, right hemisphere
99.4
Reticular pontine nucleus, oral nTPM: 106.3
2361
Male, age 74, both hemispheres
120.9
2366
Female, age 91, both hemispheres
118.9
2012
Female, age 85, both hemispheres
109.0
1939
Male, age 80, both hemispheres
93.5
2167
Male, age 76, both hemispheres
89.3
Reticulotegmental nucleus nTPM: 102.1
2322
Female, age 91, both hemispheres
120.1
2452
Male, age 74, both hemispheres
104.1
2333
Male, age 80, both hemispheres
99.6
2325
Male, age 76, both hemispheres
84.8
Spinal trigeminal nucleus, oral nTPM: 93.2
2164
Male, age 80, both hemispheres
104.4
1978
Male, age 76, both hemispheres
89.9
2737
Female, age 85, both hemispheres
85.3
Subcoeruleus area nTPM: 101.2
2369
Female, age 85, left hemisphere
137.8
2089
Male, age 76, left hemisphere
116.3
1958
Male, age 80, both hemispheres
96.6
2451
Male, age 74, both hemispheres
81.3
2323
Female, age 91, left hemisphere
73.9
Superior olive nTPM: 115.5
2020
Male, age 76, both hemispheres
129.0
2364
Male, age 74, right hemisphere
118.3
2329
Male, age 80, right hemisphere
112.5
2561
Female, age 91, both hemispheres
110.4
1875
Female, age 85, both hemispheres
107.5
Ventral periolivary nuclei nTPM: 110.2
2023
Male, age 76, both hemispheres
135.0
2130
Female, age 85, both hemispheres
109.3
2165
Male, age 80, both hemispheres
100.2
2794
Female, age 91, left hemisphere
96.1
Ventrolateral tegmental area, A5 NE cell group nTPM: 104.2
2456
Female, age 91, both hemispheres
119.2
1959
Male, age 76, both hemispheres
114.4
2840
Female, age 85, both hemispheres
109.3
2449
Male, age 74, both hemispheres
108.9
2161
Male, age 80, both hemispheres
97.3
2359
Male, age 61, both hemispheres
75.9
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
27.5
Pig sample
Sample description
nTPM
Pons nTPM: 27.5
Samples: 4
Max nTPM: 31.1
Min nTPM: 24.0
Sample A
Female
29.8
Sample B
Female
25.0
Sample C
Male
31.1
Sample D
Male
24.0
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
