MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:54.2 nTPM
HPA Brain:110.7 nTPM
GTEx:54.2 nTPM
FANTOM5:52.8 Scaled Tags Per Million
Pig:29.1 nTPM
Mouse:22.7 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 110.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 104.5
2586 Male, age 75, left hemisphere 136.3
1870 Female, age 42, unknown 116.0
2828 Female, age 72, unknown 111.5
2019 Male, age 18, unknown 110.9
2411 Female, age 72, unknown 104.6
2666 Male, age 74, left hemisphere 100.8
1827 Male, age 72, unknown 100.0
1830 Male, age 51, unknown 98.0
1833 Male, age 53, unknown 94.5
2219 Male, age 76, both hemispheres 72.7
Dorsal raphe nucleus
nTPM: 88.6
2750 Male, age 76, both hemispheres 116.5
2047 Male, age 72, unknown 91.8
1828 Male, age 53, unknown 81.5
2016 Female, age 72, unknown 80.4
2298 Female, age 72, unknown 72.6
Inferior colliculus
nTPM: 82.9
1848 Female, age 42, unknown 87.7
2849 Male, age 72, unknown 83.2
1890 Male, age 53, unknown 81.9
2097 Female, age 72, unknown 78.8
Median raphe nucleus
nTPM: 75.6
2220 Male, age 76, midline 75.6
Periaquaductal grey, anterior
nTPM: 95.2
2502 Female, age 75, unknown 102.3
1947 Male, age 18, unknown 92.7
1795 Male, age 51, unknown 90.5
Periaquaductal grey, dorsal
nTPM: 70.9
2464 Female, age 72, unknown 87.8
1840 Male, age 53, unknown 80.4
1831 Male, age 72, unknown 72.6
2850 Male, age 76, both hemispheres 42.9
Periaquaductal grey, lateral
nTPM: 66.3
2053 Male, age 18, unknown 86.0
2272 Male, age 74, both hemispheres 65.8
2140 Male, age 76, both hemispheres 46.9
Pretectal area
nTPM: 89.1
1816 Male, age 51, unknown 100.3
2407 Male, age 75, both hemispheres 100.3
1817 Female, age 42, unknown 97.8
2007 Male, age 72, unknown 96.5
1815 Male, age 53, unknown 92.5
2667 Female, age 75, unknown 91.7
1944 Female, age 72, unknown 90.9
2825 Male, age 18, unknown 84.5
2273 Male, age 74, both hemispheres 80.6
2224 Female, age 72, unknown 77.4
2316 Male, age 76, right hemisphere 67.4
Red nucleus
nTPM: 110.7
2823 Male, age 76, right hemisphere 121.3
2588 Male, age 74, left hemisphere 120.9
1821 Female, age 72, unknown 117.9
1904 Male, age 53, unknown 112.9
2227 Male, age 72, unknown 112.1
1865 Male, age 51, unknown 111.7
2769 Male, age 72, unknown 111.7
2785 Male, age 18, unknown 109.4
1954 Female, age 42, unknown 108.5
2503 Female, age 72, unknown 102.8
2584 Male, age 75, left hemisphere 102.3
2725 Female, age 75, unknown 97.5
Substantia nigra
nTPM: 78.6
2583 Male, age 75, right hemisphere 102.6
1889 Female, age 72, unknown 92.3
1941 Male, age 53, unknown 91.6
1916 Female, age 42, unknown 80.9
1851 Male, age 51, unknown 80.0
2590 Female, age 75, unknown 75.5
2409 Female, age 72, unknown 69.7
2665 Male, age 74, both hemispheres 66.3
2241 Male, age 72, unknown 64.8
2699 Male, age 18, unknown 62.6
Superior colliculus
nTPM: 95.8
2664 Male, age 75, both hemispheres 131.2
1913 Female, age 42, unknown 110.3
2668 Female, age 75, unknown 99.1
1995 Male, age 72, unknown 94.0
2587 Male, age 74, left hemisphere 93.9
1839 Male, age 51, unknown 91.3
2261 Male, age 18, unknown 88.9
2087 Female, age 72, unknown 86.9
1796 Male, age 53, unknown 86.1
1895 Male, age 76, right hemisphere 76.5
Ventral tegmental area
nTPM: 87.4
2223 Female, age 72, unknown 127.2
2410 Female, age 72, unknown 92.9
1942 Male, age 51, unknown 83.4
2021 Male, age 53, unknown 75.6
1915 Female, age 42, unknown 72.8
2218 Male, age 76, both hemispheres 72.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 54.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 54.2
Samples: 139

Max nTPM: 173.6
Min nTPM: 25.5
Std nTPM: 19.3
Median nTPM: 51.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 173.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 125.7
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 107.6
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 107.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 105.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 99.7
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 90.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 83.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 78.1
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 78.1
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 75.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 52.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 52.8
FF:10158-103A5 76 years, female 52.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 29.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 28.7
Samples: 4

Max nTPM: 33.2
Min nTPM: 25.1
Sample A Female 33.2
Sample B Female 26.5
Sample C Male 29.8
Sample D Male 25.1
Midbrain
nTPM: 29.1
Samples: 4

Max nTPM: 36.2
Min nTPM: 23.4
Sample A Female 36.2
Sample B Female 23.4
Sample C Male 29.7
Sample D Male 27.2
Periaqueductal gray
nTPM: 22.5
Samples: 3

Max nTPM: 24.6
Min nTPM: 20.9
Sample B Female 22.0
Sample C Male 24.6
Sample D Male 20.9
Superior colliculi
nTPM: 28.4
Samples: 4

Max nTPM: 33.7
Min nTPM: 22.3
Sample A Female 33.7
Sample B Female 22.3
Sample C Male 28.8
Sample D Male 28.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 22.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 22.8
Samples: 4

Max nTPM: 24.2
Min nTPM: 22.0
Sample A Male 22.0
Sample B Male 22.6
Sample C Female 24.2
Sample D Female 22.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
69447822 Antisense, RP_050419_02_B06, Mouse strain C57BL/6J (56 days, male) 0.6
72283797 Antisense, RP_051027_01_B03, Mouse strain C57BL/6J (56 days, male) 0.1

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