MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:26.6 nTPM
HPA Brain:35.3 nTPM
GTEx:26.6 nTPM
FANTOM5:60.3 Scaled Tags Per Million
Mouse:17.4 nTPM
Allen mouse:1.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 35.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 33.1
2586 Male, age 75, left hemisphere 39.8
2219 Male, age 76, both hemispheres 34.4
1833 Male, age 53, unknown 34.1
1870 Female, age 42, unknown 33.4
1830 Male, age 51, unknown 33.3
2666 Male, age 74, left hemisphere 32.1
2828 Female, age 72, unknown 32.1
2019 Male, age 18, unknown 31.5
2411 Female, age 72, unknown 30.4
1827 Male, age 72, unknown 29.7
Dorsal raphe nucleus
nTPM: 27.1
2750 Male, age 76, both hemispheres 30.7
2016 Female, age 72, unknown 28.0
2047 Male, age 72, unknown 27.2
1828 Male, age 53, unknown 25.7
2298 Female, age 72, unknown 24.0
Inferior colliculus
nTPM: 28.1
2849 Male, age 72, unknown 30.8
1848 Female, age 42, unknown 27.9
1890 Male, age 53, unknown 27.1
2097 Female, age 72, unknown 26.5
Median raphe nucleus
nTPM: 25.3
2220 Male, age 76, midline 25.3
Periaquaductal grey, anterior
nTPM: 27.5
1947 Male, age 18, unknown 30.1
2502 Female, age 75, unknown 27.0
1795 Male, age 51, unknown 25.5
Periaquaductal grey, dorsal
nTPM: 24.7
2850 Male, age 76, both hemispheres 26.1
1831 Male, age 72, unknown 24.7
2464 Female, age 72, unknown 24.2
1840 Male, age 53, unknown 23.6
Periaquaductal grey, lateral
nTPM: 27.6
2053 Male, age 18, unknown 30.3
2272 Male, age 74, both hemispheres 27.6
2140 Male, age 76, both hemispheres 24.8
Pretectal area
nTPM: 29.2
2407 Male, age 75, both hemispheres 35.5
2667 Female, age 75, unknown 32.3
2316 Male, age 76, right hemisphere 32.2
1817 Female, age 42, unknown 30.4
2007 Male, age 72, unknown 30.4
1815 Male, age 53, unknown 29.0
2224 Female, age 72, unknown 27.7
2825 Male, age 18, unknown 27.3
2273 Male, age 74, both hemispheres 25.8
1944 Female, age 72, unknown 25.2
1816 Male, age 51, unknown 25.0
Red nucleus
nTPM: 35.3
1865 Male, age 51, unknown 41.2
2823 Male, age 76, right hemisphere 38.0
2588 Male, age 74, left hemisphere 37.5
1904 Male, age 53, unknown 37.3
2769 Male, age 72, unknown 37.0
1821 Female, age 72, unknown 35.2
2227 Male, age 72, unknown 34.7
2503 Female, age 72, unknown 33.7
2725 Female, age 75, unknown 33.2
2584 Male, age 75, left hemisphere 32.1
2785 Male, age 18, unknown 32.1
1954 Female, age 42, unknown 32.0
Substantia nigra
nTPM: 29.6
2583 Male, age 75, right hemisphere 34.7
2699 Male, age 18, unknown 32.9
1851 Male, age 51, unknown 32.0
2409 Female, age 72, unknown 29.8
1941 Male, age 53, unknown 29.4
2665 Male, age 74, both hemispheres 29.4
1889 Female, age 72, unknown 29.2
2590 Female, age 75, unknown 28.4
1916 Female, age 42, unknown 27.5
2241 Male, age 72, unknown 22.5
Superior colliculus
nTPM: 30.3
1913 Female, age 42, unknown 37.5
1995 Male, age 72, unknown 36.2
1796 Male, age 53, unknown 31.2
1895 Male, age 76, right hemisphere 30.5
2668 Female, age 75, unknown 30.2
1839 Male, age 51, unknown 29.5
2587 Male, age 74, left hemisphere 27.6
2261 Male, age 18, unknown 27.2
2664 Male, age 75, both hemispheres 27.0
2087 Female, age 72, unknown 25.6
Ventral tegmental area
nTPM: 28.8
2223 Female, age 72, unknown 32.1
2021 Male, age 53, unknown 28.6
1942 Male, age 51, unknown 28.4
1915 Female, age 42, unknown 28.3
2410 Female, age 72, unknown 28.2
2218 Male, age 76, both hemispheres 26.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 26.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 26.6
Samples: 139

Max nTPM: 60.3
Min nTPM: 16.0
Std nTPM: 6.6
Median nTPM: 25.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 60.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 53.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 50.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 41.8
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 41.0
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 38.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 38.3
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 37.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 37.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 37.0
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 36.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 60.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 60.3
FF:10158-103A5 76 years, female 60.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 17.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 17.4
Samples: 4

Max nTPM: 18.2
Min nTPM: 16.9
Sample A Male 17.0
Sample B Male 16.9
Sample C Female 18.2
Sample D Female 17.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.3
67767471 Antisense, RP_040916_02_B11, Mouse strain C57BL/6J (56 days, male) 1.3

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