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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
POLE3 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
20.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
77.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
72.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
70.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
59.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
56.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
55.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
51.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
51.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
51.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
50.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
48.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
48.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
47.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
47.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
46.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
46.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
44.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
44.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
43.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
42.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
41.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
41.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
40.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
39.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
38.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
38.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
37.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
37.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
37.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
36.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
36.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
36.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
36.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
36.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
36.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
35.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
34.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
34.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
34.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
33.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
33.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
32.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
32.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
32.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
32.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
32.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
32.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
32.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
32.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
31.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
31.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
31.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
30.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
30.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
30.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
30.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
30.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
29.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
29.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
29.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
28.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
28.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
28.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
28.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
28.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
27.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
27.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
27.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
27.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
27.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
27.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
27.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
26.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
26.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
26.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
26.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
26.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
26.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
26.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
26.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
26.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
26.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
26.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
26.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
26.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
26.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
25.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
25.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
25.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
25.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
25.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
25.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
25.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
24.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
24.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
24.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
24.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
24.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
24.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
24.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
24.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
24.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
24.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
23.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
23.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
23.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
23.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
23.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
23.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
23.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
23.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
23.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
23.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
23.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
22.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
22.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
22.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
22.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
22.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
22.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
22.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
22.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
22.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
22.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
22.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
22.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
22.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
21.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
21.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
21.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
21.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
21.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
21.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
21.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
21.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
21.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
21.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
21.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
21.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
21.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
21.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
20.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
20.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
20.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
20.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
20.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
20.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
20.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
20.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
20.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
20.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
20.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
20.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
20.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
20.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
20.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
19.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
19.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
19.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
19.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
19.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
19.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
19.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
19.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
19.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
19.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
19.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
19.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
19.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
19.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
18.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
18.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
18.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
18.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
18.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
18.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
18.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
18.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
18.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
18.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
18.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
18.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
18.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
18.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
18.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
18.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
18.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
18.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
17.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
17.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
17.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
17.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
17.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
17.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
17.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
17.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
17.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
17.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
17.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
17.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
17.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
17.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
17.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
17.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
17.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
16.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
16.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
16.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
16.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
16.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
16.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
16.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
16.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
16.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
16.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
16.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
16.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
16.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
16.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
16.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
16.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
16.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
16.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
16.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
16.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
15.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
15.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
15.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
15.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
15.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
15.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
15.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
15.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
15.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
15.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
15.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
15.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
15.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
15.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
15.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
15.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
15.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
15.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
15.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
15.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
15.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
15.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
14.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
14.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
14.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
14.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
14.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
14.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
14.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
14.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
14.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
14.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
14.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
14.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
14.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
13.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
13.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
13.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
13.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
13.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
13.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
13.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
13.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
13.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
13.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
13.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
13.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
13.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
13.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
13.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
12.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
12.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
12.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
12.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
12.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
12.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
12.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
12.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
12.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
12.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
12.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
12.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
12.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
12.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
12.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
12.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
12.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
12.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
12.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
12.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
12.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
12.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
12.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
11.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
11.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
11.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
11.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
11.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
11.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
11.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
11.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
11.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
11.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
11.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
11.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
11.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
11.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
11.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
11.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
11.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
11.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
10.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
10.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
10.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
10.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
10.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
10.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
10.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
10.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
10.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
10.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
10.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
10.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
10.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
10.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
9.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
9.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
9.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
9.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
9.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
9.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
9.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
9.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
9.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
8.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
8.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
8.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
8.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
8.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
8.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
8.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
8.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
8.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
8.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
7.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
7.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
7.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
7.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
7.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
6.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
6.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
6.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
6.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
6.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
5.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
POLE3 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
19.4
Number of samples
231
Samples
Sample
Description
TPM
DO45265
0 years, male, NA, stage:3, alive, 1020 days
57.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
54.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
52.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
47.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
46.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
46.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
45.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
44.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
44.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
42.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
40.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
38.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
37.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
36.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
36.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
36.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
35.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
34.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
33.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
33.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
33.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
31.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
30.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
30.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
30.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
29.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
29.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
29.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
29.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
29.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
28.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
28.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
28.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
27.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
27.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
27.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
27.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
26.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
26.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
26.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
26.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
25.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
25.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
25.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
25.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
25.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
24.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
24.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
24.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
24.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
24.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
24.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
24.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
24.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
23.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
23.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
23.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
23.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
23.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
23.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
23.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
23.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
23.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
22.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
22.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
22.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
22.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
22.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
22.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
22.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
22.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
21.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
21.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
21.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
21.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
21.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
21.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
20.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
20.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
20.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
20.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
20.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
20.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
20.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
20.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
20.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
20.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
19.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
19.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
19.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
19.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
19.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
19.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
19.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
19.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
19.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
19.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
19.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
19.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
18.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
18.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
18.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
18.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
18.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
18.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
18.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
18.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
18.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
18.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
17.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
17.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
17.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
17.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
17.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
17.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
17.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
17.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
17.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
16.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
16.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
16.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
16.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
16.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
16.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
16.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
16.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
16.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
16.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
16.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
16.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
16.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
16.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
16.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
16.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
15.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
15.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
15.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
15.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
15.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
15.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
15.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
15.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
15.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
15.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
15.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
15.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
14.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
14.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
14.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
14.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
14.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
14.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
14.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
14.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
14.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
14.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
14.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
14.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
14.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
14.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
14.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
14.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
13.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
13.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
13.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
13.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
13.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
13.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
13.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
13.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
13.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
13.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
13.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
13.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
13.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
13.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
13.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
13.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
13.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
13.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
12.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
12.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
12.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
12.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
12.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
12.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
12.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
12.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
12.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
12.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
12.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
12.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
12.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
12.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
11.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
11.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
11.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
11.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
11.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
10.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
10.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
10.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
10.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
10.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
10.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
10.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
10.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
9.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
9.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
9.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
9.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
9.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
9.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
9.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
8.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
8.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
8.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
8.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
8.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
7.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
7.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
7.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
7.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
7.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
6.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
6.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
6.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
6.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
5.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
497
Tumor
1.6
965
Tumor
1.5
463
Tumor
1.3
967
Tumor
1.3
957
Tumor
1.1
695
Tumor
1.0
661
Tumor
0.9
313
Tumor
0.9
865
Tumor
0.9
953
Tumor
0.8
267
Tumor
0.8
943
Tumor
0.8
537
Tumor
0.8
161
Tumor
0.8
351
Tumor
0.7
663
Tumor
0.7
671
Tumor
0.7
567
Tumor
0.7
951
Tumor
0.7
285
Tumor
0.7
367
Tumor
0.7
375
Tumor
0.7
1013
Tumor
0.7
413
Tumor
0.7
535
Tumor
0.7
523
Tumor
0.6
125
Tumor
0.6
737
Tumor
0.6
213
Tumor
0.6
517
Tumor
0.6
743
Tumor
0.6
355
Tumor
0.6
277
Tumor
0.5
283
Tumor
0.5
411
Tumor
0.5
343
Tumor
0.5
487
Tumor
0.5
465
Tumor
0.5
425
Tumor
0.5
573
Tumor
0.5
427
Tumor
0.5
211
Tumor
0.5
983
Tumor
0.4
131
Tumor
0.4
391
Tumor
0.4
435
Tumor
0.4
493
Tumor
0.4
257
Tumor
0.4
571
Tumor
0.4
525
Tumor
0.3
533
Tumor
0.3
963
Tumor
0.3
357
Tumor
0.3
423
Tumor
0.3
923
Tumor
0.3
341
Tumor
0.3
715
Tumor
0.3
1031
Tumor
0.3
814
Normal
0.3
147
Tumor
0.3
937
Tumor
0.3
647
Tumor
0.3
447
Tumor
0.2
467
Tumor
0.2
385
Tumor
0.2
513
Tumor
0.2
724
Normal
0.2
127
Tumor
0.2
445
Tumor
0.2
917
Tumor
0.2
745
Tumor
0.1
545
Tumor
0.1
331
Tumor
0.1
231
Tumor
0.1
685
Tumor
0.1
461
Tumor
0.1
473
Tumor
0.1
817
Tumor
0.1
815
Tumor
0.1
721
Tumor
0.1
187
Tumor
0.1
1045
Tumor
0.1
1042
Normal
0.1
271
Tumor
0.1
1021
Tumor
0.1
1041
Tumor
0.1
483
Tumor
0.0
526
Normal
0.0
471
Tumor
0.0
813
Tumor
0.0
977
Tumor
0.0
433
Tumor
0.0
557
Tumor
0.0
925
Tumor
0.0
524
Normal
0.0
921
Tumor
0.0
365
Tumor
0.0
223
Tumor
0.0
665
Tumor
0.0
873
Tumor
0.0
477
Tumor
0.0
387
Tumor
0.0
777
Tumor
0.0
966
Normal
0.0
195
Tumor
-0.1
981
Tumor
-0.1
861
Tumor
-0.1
191
Tumor
-0.1
498
Normal
-0.1
443
Tumor
-0.1
297
Tumor
-0.1
727
Tumor
-0.1
877
Tumor
-0.1
1032
Normal
-0.1
516
Normal
-0.1
227
Tumor
-0.1
518
Normal
-0.1
141
Tumor
-0.1
217
Tumor
-0.1
778
Normal
-0.1
975
Tumor
-0.1
635
Tumor
-0.1
574
Normal
-0.1
756
Normal
-0.1
881
Tumor
-0.1
915
Tumor
-0.1
874
Normal
-0.1
978
Normal
-0.1
135
Tumor
-0.1
515
Tumor
-0.1
851
Tumor
-0.1
956
Normal
-0.1
361
Tumor
-0.1
393
Tumor
-0.2
514
Normal
-0.2
492
Normal
-0.2
697
Tumor
-0.2
664
Normal
-0.2
755
Tumor
-0.2
444
Normal
-0.2
185
Tumor
-0.2
538
Normal
-0.2
863
Tumor
-0.2
868
Normal
-0.2
383
Tumor
-0.2
1016
Normal
-0.2
1027
Tumor
-0.2
864
Normal
-0.2
478
Normal
-0.2
866
Normal
-0.2
662
Normal
-0.2
883
Tumor
-0.2
916
Normal
-0.2
785
Tumor
-0.2
1015
Tumor
-0.2
964
Normal
-0.2
534
Normal
-0.2
171
Tumor
-0.2
527
Tumor
-0.2
641
Tumor
-0.2
786
Normal
-0.2
395
Tumor
-0.2
627
Tumor
-0.2
982
Normal
-0.2
212
Normal
-0.2
112
Tumor
-0.2
938
Normal
-0.2
858
Normal
-0.2
672
Normal
-0.2
1025
Tumor
-0.2
421
Tumor
-0.2
491
Tumor
-0.2
696
Normal
-0.2
311
Tumor
-0.2
823
Tumor
-0.2
926
Normal
-0.2
648
Normal
-0.2
123
Tumor
-0.2
432
Normal
-0.2
1028
Normal
-0.2
224
Normal
-0.2
113
Tumor
-0.2
955
Tumor
-0.2
455
Tumor
-0.3
278
Normal
-0.3
431
Tumor
-0.3
857
Tumor
-0.3
572
Normal
-0.3
284
Normal
-0.3
192
Normal
-0.3
922
Normal
-0.3
446
Normal
-0.3
332
Normal
-0.3
862
Normal
-0.3
384
Normal
-0.3
268
Normal
-0.3
1014
Normal
-0.3
415
Tumor
-0.3
221
Tumor
-0.3
494
Normal
-0.3
984
Normal
-0.3
312
Normal
-0.3
474
Normal
-0.3
913
Tumor
-0.3
286
Normal
-0.3
968
Normal
-0.3
952
Normal
-0.3
328
Normal
-0.3
958
Normal
-0.3
1026
Normal
-0.3
368
Normal
-0.3
563
Tumor
-0.3
376
Normal
-0.3
484
Normal
-0.3
145
Tumor
-0.3
472
Normal
-0.3
564
Normal
-0.3
698
Normal
-0.3
568
Normal
-0.3
867
Tumor
-0.3
434
Normal
-0.3
546
Normal
-0.3
386
Normal
-0.3
666
Normal
-0.3
416
Normal
-0.3
536
Normal
-0.3
914
Normal
-0.3
686
Normal
-0.3
713
Tumor
-0.3
364
Normal
-0.3
924
Normal
-0.3
482
Normal
-0.3
1046
Normal
-0.4
488
Normal
-0.4
126
Normal
-0.4
954
Normal
-0.4
558
Normal
-0.4
314
Normal
-0.4
412
Normal
-0.4
615
Tumor
-0.4
436
Normal
-0.4
232
Normal
-0.4
528
Normal
-0.4
918
Normal
-0.4
366
Normal
-0.4
228
Normal
-0.4
451
Tumor
-0.4
617
Tumor
-0.4
553
Tumor
-0.4
554
Normal
-0.4
272
Normal
-0.4
882
Normal
-0.4
124
Normal
-0.4
298
Normal
-0.4
738
Normal
-0.4
824
Normal
-0.4
481
Tumor
-0.4
188
Normal
-0.4
944
Normal
-0.4
356
Normal
-0.4
628
Normal
-0.4
1043
Tumor
-0.4
218
Normal
-0.4
262
Normal
-0.4
344
Normal
-0.4
741
Tumor
-0.4
456
Normal
-0.4
258
Normal
-0.4
422
Normal
-0.4
327
Tumor
-0.4
714
Normal
-0.4
392
Normal
-0.4
138
Normal
-0.4
468
Normal
-0.4
818
Normal
-0.4
146
Normal
-0.5
388
Normal
-0.5
196
Normal
-0.5
222
Normal
-0.5
636
Normal
-0.5
642
Normal
-0.5
464
Normal
-0.5
136
Normal
-0.5
111
Normal
-0.5
394
Normal
-0.5
428
Normal
-0.5
912
Normal
-0.5
722
Normal
-0.5
114
Normal
-0.5
142
Normal
-0.5
816
Normal
-0.5
1044
Normal
-0.5
362
Normal
-0.5
352
Normal
-0.5
396
Normal
-0.5
214
Normal
-0.5
744
Normal
-0.5
746
Normal
-0.5
353
Tumor
-0.5
342
Normal
-0.5
884
Normal
-0.5
363
Tumor
-0.6
852
Normal
-0.6
424
Normal
-0.6
618
Normal
-0.6
148
Normal
-0.6
716
Normal
-0.6
466
Normal
-0.6
728
Normal
-0.6
172
Normal
-0.6
358
Normal
-0.6
137
Tumor
-0.6
462
Normal
-0.6
878
Normal
-0.6
162
Normal
-0.6
723
Tumor
-0.6
261
Tumor
-0.6
616
Normal
-0.6
452
Normal
-0.6
448
Normal
-0.6
1022
Normal
-0.7
414
Normal
-0.7
132
Normal
-0.7
976
Normal
-0.7
911
Tumor
-0.7
128
Normal
-0.7
186
Normal
-0.7
426
Normal
-0.8
742
Normal
-0.8
354
Normal
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
