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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
IDNK is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
83.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
70.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
68.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
65.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
57.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
56.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
52.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
47.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
44.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
43.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
41.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
40.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
40.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
40.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
38.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
38.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
38.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
38.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
37.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
36.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
36.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
35.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
35.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
35.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
34.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
33.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
33.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
32.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
32.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
32.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
32.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
32.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
31.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
31.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
31.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
31.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
30.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
29.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
29.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
29.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
28.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
28.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
28.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
28.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
27.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
27.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
27.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
27.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
27.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
27.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
26.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
26.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
26.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
26.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
25.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
25.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
25.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
25.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
24.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
24.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
24.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
24.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
24.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
24.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
24.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
24.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
24.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
23.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
23.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
23.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
23.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
23.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
23.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
23.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
23.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
23.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
23.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
23.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
22.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
22.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
22.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
22.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
22.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
22.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
22.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
22.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
22.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
21.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
21.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
21.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
21.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
21.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
21.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
21.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
21.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
21.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
20.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
20.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
20.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
20.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
20.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
20.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
20.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
20.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
20.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
20.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
20.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
19.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
19.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
19.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
19.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
19.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
19.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
19.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
18.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
18.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
18.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
18.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
18.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
18.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
18.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
18.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
18.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
18.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
18.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
18.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
18.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
17.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
17.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
17.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
17.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
17.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
17.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
17.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
17.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
17.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
17.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
17.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
16.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
16.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
16.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
16.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
16.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
16.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
16.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
16.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
16.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
16.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
15.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
15.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
15.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
15.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
15.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
15.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
15.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
15.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
15.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
15.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
14.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
14.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
14.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
14.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
14.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
14.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
14.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
14.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
14.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
14.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
14.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
14.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
14.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
14.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
14.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
13.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
13.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
13.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
13.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
13.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
13.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
13.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
13.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
13.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
13.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
13.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
13.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
13.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
13.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
13.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
13.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
12.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
12.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
12.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
12.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
12.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
12.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
12.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
12.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
12.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
12.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
12.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
12.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
12.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
12.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
12.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
12.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
12.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
12.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
12.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
11.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
11.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
11.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
11.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
11.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
11.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
11.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
11.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
11.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
11.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
11.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
11.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
11.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
11.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
11.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
11.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
11.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
11.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
11.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
11.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
11.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
11.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
10.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
10.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
10.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
10.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
10.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
10.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
10.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
10.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
10.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
10.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
10.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
10.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
10.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
10.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
10.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
10.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
10.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
10.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
10.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
10.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
10.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
10.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
9.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
9.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
9.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
9.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
9.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
9.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
9.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
9.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
9.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
9.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
9.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
9.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
9.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
9.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
9.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
9.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
9.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
8.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
8.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
8.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
8.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
8.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
8.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
8.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
8.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
8.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
8.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
8.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
8.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
8.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
8.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
8.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
8.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
8.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
8.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
8.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
8.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
8.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
8.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
8.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
7.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
7.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
7.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
7.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
7.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
7.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
7.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
7.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
7.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
7.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
7.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
7.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
7.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
7.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
6.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
6.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
6.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
6.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
6.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
6.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
6.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
6.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
6.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
6.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
6.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
6.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
6.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
6.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
6.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
6.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
6.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
5.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
5.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
5.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
5.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
5.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
5.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
5.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
5.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
5.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
5.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
5.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
5.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
4.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
4.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
4.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
4.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
4.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
3.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
3.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
3.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
3.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
2.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
818
Normal
1.2
111
Normal
1.2
298
Normal
1.2
824
Normal
1.1
436
Normal
1.1
456
Normal
1.1
698
Normal
1.1
636
Normal
1.0
342
Normal
1.0
568
Normal
1.0
744
Normal
1.0
723
Tumor
1.0
914
Normal
1.0
616
Normal
1.0
426
Normal
1.0
866
Normal
1.0
1022
Normal
0.9
332
Normal
0.9
858
Normal
0.9
862
Normal
0.9
132
Normal
0.9
882
Normal
0.9
354
Normal
0.9
864
Normal
0.9
666
Normal
0.9
232
Normal
0.8
572
Normal
0.8
924
Normal
0.8
114
Normal
0.8
867
Tumor
0.8
464
Normal
0.8
746
Normal
0.8
186
Normal
0.8
128
Normal
0.8
662
Normal
0.8
468
Normal
0.8
618
Normal
0.8
664
Normal
0.8
376
Normal
0.8
868
Normal
0.8
196
Normal
0.8
428
Normal
0.8
214
Normal
0.8
786
Normal
0.8
446
Normal
0.8
738
Normal
0.8
272
Normal
0.8
1026
Normal
0.7
314
Normal
0.7
222
Normal
0.7
258
Normal
0.7
922
Normal
0.7
352
Normal
0.7
366
Normal
0.7
312
Normal
0.7
278
Normal
0.7
422
Normal
0.7
148
Normal
0.7
448
Normal
0.7
344
Normal
0.7
714
Normal
0.7
938
Normal
0.7
728
Normal
0.7
648
Normal
0.7
1042
Normal
0.7
628
Normal
0.7
672
Normal
0.7
262
Normal
0.6
742
Normal
0.6
722
Normal
0.6
482
Normal
0.6
362
Normal
0.6
716
Normal
0.6
918
Normal
0.6
564
Normal
0.6
558
Normal
0.6
356
Normal
0.6
386
Normal
0.6
124
Normal
0.6
127
Tumor
0.6
432
Normal
0.6
462
Normal
0.6
162
Normal
0.6
912
Normal
0.6
146
Normal
0.6
396
Normal
0.5
466
Normal
0.5
451
Tumor
0.5
394
Normal
0.5
452
Normal
0.5
642
Normal
0.5
952
Normal
0.5
1046
Normal
0.5
286
Normal
0.5
686
Normal
0.5
944
Normal
0.5
368
Normal
0.5
172
Normal
0.5
926
Normal
0.5
424
Normal
0.5
388
Normal
0.5
136
Normal
0.5
956
Normal
0.4
884
Normal
0.4
138
Normal
0.4
142
Normal
0.4
358
Normal
0.4
878
Normal
0.4
416
Normal
0.4
268
Normal
0.4
627
Tumor
0.4
778
Normal
0.4
816
Normal
0.4
1032
Normal
0.4
126
Normal
0.4
365
Tumor
0.4
1044
Normal
0.4
964
Normal
0.4
954
Normal
0.4
465
Tumor
0.4
434
Normal
0.3
488
Normal
0.3
472
Normal
0.3
696
Normal
0.3
615
Tumor
0.3
852
Normal
0.3
874
Normal
0.3
968
Normal
0.3
393
Tumor
0.3
984
Normal
0.3
218
Normal
0.3
1016
Normal
0.3
981
Tumor
0.3
231
Tumor
0.3
528
Normal
0.2
574
Normal
0.2
188
Normal
0.2
955
Tumor
0.2
384
Normal
0.2
635
Tumor
0.2
228
Normal
0.2
756
Normal
0.2
695
Tumor
0.2
484
Normal
0.2
435
Tumor
0.2
937
Tumor
0.1
444
Normal
0.1
958
Normal
0.1
364
Normal
0.1
976
Normal
0.1
112
Tumor
0.1
978
Normal
0.1
546
Normal
0.1
474
Normal
0.1
284
Normal
0.1
534
Normal
0.1
171
Tumor
0.1
921
Tumor
0.1
1028
Normal
0.1
741
Tumor
0.1
1014
Normal
0.1
817
Tumor
0.1
494
Normal
0.0
412
Normal
0.0
982
Normal
0.0
966
Normal
0.0
261
Tumor
0.0
414
Normal
0.0
857
Tumor
-0.1
526
Normal
-0.1
113
Tumor
-0.1
313
Tumor
-0.1
1045
Tumor
-0.1
477
Tumor
-0.1
977
Tumor
-0.1
745
Tumor
-0.1
192
Normal
-0.2
212
Normal
-0.2
863
Tumor
-0.2
1015
Tumor
-0.2
423
Tumor
-0.2
478
Normal
-0.2
461
Tumor
-0.2
911
Tumor
-0.2
743
Tumor
-0.2
392
Normal
-0.2
224
Normal
-0.3
913
Tumor
-0.3
328
Normal
-0.3
877
Tumor
-0.3
916
Normal
-0.3
481
Tumor
-0.3
715
Tumor
-0.3
341
Tumor
-0.3
433
Tumor
-0.3
641
Tumor
-0.3
724
Normal
-0.4
1013
Tumor
-0.4
267
Tumor
-0.4
967
Tumor
-0.4
685
Tumor
-0.4
861
Tumor
-0.4
217
Tumor
-0.4
498
Normal
-0.4
915
Tumor
-0.4
271
Tumor
-0.4
447
Tumor
-0.4
353
Tumor
-0.5
411
Tumor
-0.5
147
Tumor
-0.5
777
Tumor
-0.5
1031
Tumor
-0.5
413
Tumor
-0.5
727
Tumor
-0.5
1041
Tumor
-0.5
467
Tumor
-0.5
513
Tumor
-0.5
533
Tumor
-0.5
557
Tumor
-0.6
123
Tumor
-0.6
187
Tumor
-0.6
516
Normal
-0.6
131
Tumor
-0.6
881
Tumor
-0.6
257
Tumor
-0.6
514
Normal
-0.6
814
Normal
-0.6
185
Tumor
-0.6
563
Tumor
-0.6
357
Tumor
-0.6
227
Tumor
-0.6
697
Tumor
-0.6
425
Tumor
-0.7
161
Tumor
-0.7
415
Tumor
-0.7
141
Tumor
-0.7
297
Tumor
-0.7
963
Tumor
-0.7
367
Tumor
-0.7
361
Tumor
-0.7
213
Tumor
-0.7
554
Normal
-0.7
865
Tumor
-0.7
343
Tumor
-0.7
427
Tumor
-0.7
536
Normal
-0.7
571
Tumor
-0.7
445
Tumor
-0.7
883
Tumor
-0.7
331
Tumor
-0.8
975
Tumor
-0.8
1025
Tumor
-0.8
925
Tumor
-0.8
493
Tumor
-0.8
195
Tumor
-0.8
873
Tumor
-0.8
538
Normal
-0.8
923
Tumor
-0.8
145
Tumor
-0.8
1043
Tumor
-0.8
137
Tumor
-0.8
953
Tumor
-0.8
463
Tumor
-0.8
665
Tumor
-0.9
721
Tumor
-0.9
517
Tumor
-0.9
383
Tumor
-0.9
1027
Tumor
-0.9
713
Tumor
-0.9
823
Tumor
-0.9
518
Normal
-0.9
277
Tumor
-1.0
492
Normal
-1.0
755
Tumor
-1.0
617
Tumor
-1.0
191
Tumor
-1.0
951
Tumor
-1.0
917
Tumor
-1.0
351
Tumor
-1.0
421
Tumor
-1.0
391
Tumor
-1.0
957
Tumor
-1.0
471
Tumor
-1.0
1021
Tumor
-1.0
221
Tumor
-1.0
515
Tumor
-1.1
125
Tumor
-1.1
497
Tumor
-1.1
737
Tumor
-1.1
375
Tumor
-1.1
573
Tumor
-1.2
671
Tumor
-1.2
851
Tumor
-1.2
943
Tumor
-1.2
661
Tumor
-1.3
813
Tumor
-1.3
663
Tumor
-1.3
785
Tumor
-1.3
327
Tumor
-1.3
983
Tumor
-1.3
553
Tumor
-1.3
524
Normal
-1.4
647
Tumor
-1.4
387
Tumor
-1.4
311
Tumor
-1.4
385
Tumor
-1.5
567
Tumor
-1.5
443
Tumor
-1.5
455
Tumor
-1.5
815
Tumor
-1.6
431
Tumor
-1.6
135
Tumor
-1.7
283
Tumor
-1.7
363
Tumor
-1.8
483
Tumor
-1.8
491
Tumor
-1.8
487
Tumor
-1.8
395
Tumor
-1.8
355
Tumor
-1.9
965
Tumor
-1.9
211
Tumor
-1.9
223
Tumor
-2.0
537
Tumor
-2.0
285
Tumor
-2.1
473
Tumor
-2.1
545
Tumor
-2.1
535
Tumor
-2.1
525
Tumor
-2.3
527
Tumor
-2.3
523
Tumor
-2.4
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
