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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SIGMAR1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
112.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
365.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
350.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
313.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
287.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
272.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
268.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
268.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
267.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
261.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
257.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
256.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
253.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
253.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
250.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
245.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
243.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
242.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
241.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
239.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
237.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
236.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
235.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
233.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
231.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
227.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
225.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
223.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
219.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
218.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
217.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
212.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
207.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
207.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
207.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
202.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
198.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
196.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
192.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
192.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
188.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
187.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
184.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
183.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
181.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
180.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
178.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
178.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
177.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
176.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
175.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
175.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
175.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
175.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
173.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
173.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
173.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
172.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
172.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
171.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
169.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
166.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
166.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
166.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
165.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
162.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
162.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
161.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
160.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
159.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
159.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
159.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
159.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
158.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
158.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
158.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
158.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
155.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
154.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
154.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
153.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
153.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
153.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
152.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
151.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
150.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
150.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
148.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
148.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
147.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
147.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
147.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
145.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
145.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
143.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
143.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
143.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
142.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
142.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
142.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
142.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
141.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
139.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
138.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
138.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
138.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
137.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
137.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
136.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
135.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
135.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
135.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
135.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
133.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
133.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
131.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
131.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
130.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
130.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
129.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
129.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
129.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
129.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
127.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
126.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
126.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
126.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
126.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
125.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
125.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
124.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
124.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
123.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
122.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
122.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
121.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
121.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
120.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
120.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
119.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
119.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
119.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
118.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
118.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
118.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
117.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
117.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
117.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
117.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
116.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
116.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
116.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
116.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
115.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
114.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
114.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
114.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
113.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
113.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
112.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
112.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
112.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
112.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
110.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
109.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
109.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
109.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
108.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
108.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
108.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
108.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
107.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
107.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
107.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
107.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
107.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
107.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
106.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
106.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
106.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
105.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
104.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
104.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
102.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
102.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
102.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
102.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
101.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
101.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
100.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
100.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
100.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
100.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
99.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
99.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
99.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
98.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
97.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
97.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
97.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
97.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
96.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
94.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
93.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
92.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
92.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
92.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
91.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
91.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
91.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
91.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
91.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
90.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
90.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
89.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
88.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
88.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
88.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
87.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
87.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
86.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
86.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
86.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
86.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
86.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
86.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
86.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
84.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
84.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
84.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
83.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
83.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
83.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
82.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
82.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
82.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
81.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
80.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
80.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
80.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
80.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
79.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
79.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
79.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
79.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
79.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
79.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
78.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
78.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
78.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
77.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
77.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
77.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
77.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
77.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
75.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
75.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
75.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
74.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
74.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
74.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
74.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
73.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
71.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
70.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
70.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
70.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
70.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
70.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
70.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
69.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
69.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
69.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
68.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
67.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
67.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
67.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
67.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
67.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
67.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
67.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
66.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
65.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
65.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
65.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
64.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
64.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
64.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
63.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
63.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
62.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
60.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
59.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
59.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
59.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
57.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
57.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
54.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
54.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
54.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
54.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
53.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
52.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
52.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
52.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
52.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
52.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
52.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
51.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
51.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
51.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
51.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
50.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
49.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
48.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
47.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
46.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
45.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
44.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
44.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
43.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
42.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
41.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
40.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
38.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
37.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
36.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
36.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
35.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
33.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
32.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
31.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
28.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
27.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
27.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
26.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
24.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
24.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
24.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
24.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
24.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
23.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
22.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
21.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
21.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
20.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
18.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
16.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
16.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
16.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
15.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
14.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
11.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
11.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
10.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
9.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
9.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
9.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
8.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
4.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SIGMAR1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
119.8
Number of samples
231
Samples
Sample
Description
TPM
DO48701
0 years, male, NA, stage:2, alive, 780 days
1069.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
671.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
357.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
319.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
315.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
293.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
286.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
258.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
253.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
231.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
227.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
224.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
220.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
217.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
213.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
210.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
207.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
207.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
206.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
202.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
200.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
200.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
195.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
194.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
193.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
189.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
185.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
183.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
182.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
179.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
179.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
172.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
172.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
170.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
169.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
168.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
164.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
163.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
163.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
155.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
154.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
152.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
152.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
150.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
149.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
147.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
146.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
144.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
143.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
142.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
142.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
142.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
142.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
140.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
140.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
139.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
138.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
138.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
138.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
137.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
136.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
136.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
136.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
135.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
133.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
132.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
132.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
132.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
131.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
131.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
130.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
130.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
127.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
127.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
127.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
126.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
124.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
124.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
122.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
122.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
121.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
120.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
119.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
119.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
117.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
117.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
116.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
116.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
116.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
116.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
116.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
115.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
115.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
114.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
113.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
113.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
113.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
112.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
112.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
112.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
112.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
112.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
112.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
112.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
109.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
109.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
108.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
108.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
107.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
107.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
106.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
105.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
104.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
104.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
103.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
103.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
103.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
102.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
101.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
101.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
101.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
101.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
101.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
100.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
100.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
99.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
99.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
99.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
99.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
99.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
99.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
98.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
98.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
98.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
98.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
98.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
94.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
93.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
93.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
92.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
92.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
92.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
92.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
91.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
91.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
91.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
91.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
90.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
90.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
90.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
90.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
90.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
90.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
89.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
89.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
88.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
88.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
87.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
86.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
85.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
85.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
85.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
84.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
84.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
83.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
82.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
82.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
82.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
81.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
81.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
79.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
78.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
78.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
77.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
77.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
77.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
76.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
75.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
75.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
75.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
75.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
73.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
72.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
72.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
71.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
71.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
70.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
70.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
69.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
69.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
68.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
67.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
66.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
66.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
66.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
65.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
65.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
63.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
62.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
58.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
58.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
57.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
57.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
57.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
56.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
53.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
51.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
51.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
50.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
50.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
49.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
45.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
45.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
44.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
42.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
37.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
37.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
36.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
33.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
31.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
31.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
29.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
29.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
27.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
25.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
24.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
24.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
21.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
21.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
19.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
18.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
727
Tumor
1.1
426
Normal
0.9
857
Tumor
0.8
171
Tumor
0.8
111
Normal
0.8
1027
Tumor
0.8
741
Tumor
0.7
1032
Normal
0.7
695
Tumor
0.7
1021
Tumor
0.7
172
Normal
0.7
465
Tumor
0.7
128
Normal
0.7
921
Tumor
0.7
342
Normal
0.7
851
Tumor
0.7
162
Normal
0.7
314
Normal
0.7
481
Tumor
0.7
422
Normal
0.7
354
Normal
0.6
648
Normal
0.6
746
Normal
0.6
435
Tumor
0.6
411
Tumor
0.6
744
Normal
0.6
446
Normal
0.6
714
Normal
0.6
358
Normal
0.6
1013
Tumor
0.6
227
Tumor
0.6
186
Normal
0.6
424
Normal
0.6
278
Normal
0.6
636
Normal
0.6
466
Normal
0.6
462
Normal
0.6
142
Normal
0.6
124
Normal
0.6
332
Normal
0.6
452
Normal
0.5
728
Normal
0.5
1022
Normal
0.5
1043
Tumor
0.5
922
Normal
0.5
148
Normal
0.5
392
Normal
0.5
722
Normal
0.5
428
Normal
0.5
488
Normal
0.5
123
Tumor
0.5
738
Normal
0.5
298
Normal
0.5
232
Normal
0.5
414
Normal
0.5
126
Normal
0.5
196
Normal
0.5
436
Normal
0.5
357
Tumor
0.4
615
Tumor
0.4
412
Normal
0.4
258
Normal
0.4
571
Tumor
0.4
564
Normal
0.4
698
Normal
0.4
132
Normal
0.4
464
Normal
0.4
376
Normal
0.4
534
Normal
0.4
664
Normal
0.4
618
Normal
0.4
494
Normal
0.4
277
Tumor
0.4
818
Normal
0.4
572
Normal
0.4
222
Normal
0.4
944
Normal
0.4
112
Tumor
0.4
388
Normal
0.4
858
Normal
0.4
456
Normal
0.4
616
Normal
0.4
482
Normal
0.4
723
Tumor
0.4
568
Normal
0.4
938
Normal
0.4
477
Tumor
0.4
666
Normal
0.4
328
Normal
0.4
396
Normal
0.4
955
Tumor
0.4
721
Tumor
0.4
984
Normal
0.4
114
Normal
0.4
356
Normal
0.4
862
Normal
0.3
926
Normal
0.3
672
Normal
0.3
468
Normal
0.3
952
Normal
0.3
394
Normal
0.3
642
Normal
0.3
912
Normal
0.3
662
Normal
0.3
327
Tumor
0.3
364
Normal
0.3
423
Tumor
0.3
742
Normal
0.3
432
Normal
0.3
136
Normal
0.3
824
Normal
0.3
1028
Normal
0.3
145
Tumor
0.3
147
Tumor
0.3
816
Normal
0.3
696
Normal
0.3
344
Normal
0.3
755
Tumor
0.3
484
Normal
0.3
1014
Normal
0.3
533
Tumor
0.3
286
Normal
0.3
868
Normal
0.3
978
Normal
0.3
574
Normal
0.3
362
Normal
0.3
368
Normal
0.3
528
Normal
0.3
924
Normal
0.2
686
Normal
0.2
1026
Normal
0.2
526
Normal
0.2
628
Normal
0.2
365
Tumor
0.2
956
Normal
0.2
214
Normal
0.2
1046
Normal
0.2
514
Normal
0.2
915
Tumor
0.2
982
Normal
0.2
865
Tumor
0.2
1016
Normal
0.2
262
Normal
0.2
756
Normal
0.2
361
Tumor
0.2
312
Normal
0.2
267
Tumor
0.2
883
Tumor
0.2
968
Normal
0.2
976
Normal
0.2
914
Normal
0.2
981
Tumor
0.2
884
Normal
0.2
866
Normal
0.1
786
Normal
0.1
777
Tumor
0.1
218
Normal
0.1
864
Normal
0.1
445
Tumor
0.1
558
Normal
0.1
778
Normal
0.1
878
Normal
0.1
195
Tumor
0.1
257
Tumor
0.1
546
Normal
0.1
393
Tumor
0.1
518
Normal
0.1
472
Normal
0.1
352
Normal
0.1
852
Normal
0.1
1044
Normal
0.1
363
Tumor
0.1
523
Tumor
0.1
366
Normal
0.1
146
Normal
0.1
573
Tumor
0.1
448
Normal
0.1
745
Tumor
0.1
918
Normal
0.1
954
Normal
0.1
713
Tumor
0.1
463
Tumor
0.1
272
Normal
0.1
138
Normal
0.1
554
Normal
0.0
964
Normal
0.0
188
Normal
0.0
386
Normal
0.0
433
Tumor
0.0
913
Tumor
0.0
923
Tumor
0.0
863
Tumor
0.0
635
Tumor
0.0
953
Tumor
0.0
663
Tumor
0.0
882
Normal
0.0
553
Tumor
0.0
867
Tumor
0.0
737
Tumor
0.0
977
Tumor
0.0
911
Tumor
0.0
421
Tumor
0.0
384
Normal
0.0
228
Normal
0.0
916
Normal
0.0
284
Normal
0.0
478
Normal
0.0
444
Normal
0.0
161
Tumor
0.0
141
Tumor
0.0
617
Tumor
0.0
874
Normal
0.0
557
Tumor
0.0
355
Tumor
0.0
498
Normal
0.0
451
Tumor
-0.1
873
Tumor
-0.1
492
Normal
-0.1
513
Tumor
-0.1
665
Tumor
-0.1
967
Tumor
-0.1
224
Normal
-0.1
425
Tumor
-0.1
497
Tumor
-0.1
627
Tumor
-0.1
877
Tumor
-0.1
937
Tumor
-0.1
1045
Tumor
-0.1
217
Tumor
-0.1
471
Tumor
-0.1
535
Tumor
-0.1
474
Normal
-0.1
813
Tumor
-0.1
187
Tumor
-0.1
113
Tumor
-0.2
641
Tumor
-0.2
536
Normal
-0.2
963
Tumor
-0.2
416
Normal
-0.2
517
Tumor
-0.2
127
Tumor
-0.2
516
Normal
-0.2
817
Tumor
-0.2
223
Tumor
-0.2
716
Normal
-0.2
431
Tumor
-0.2
861
Tumor
-0.2
724
Normal
-0.2
958
Normal
-0.2
524
Normal
-0.2
427
Tumor
-0.2
367
Tumor
-0.2
434
Normal
-0.2
966
Normal
-0.2
413
Tumor
-0.2
231
Tumor
-0.2
415
Tumor
-0.2
493
Tumor
-0.2
538
Normal
-0.2
391
Tumor
-0.2
268
Normal
-0.2
353
Tumor
-0.2
461
Tumor
-0.3
1042
Normal
-0.3
1025
Tumor
-0.3
785
Tumor
-0.3
951
Tumor
-0.3
685
Tumor
-0.3
1031
Tumor
-0.3
137
Tumor
-0.3
212
Normal
-0.3
1015
Tumor
-0.3
261
Tumor
-0.3
271
Tumor
-0.3
525
Tumor
-0.3
387
Tumor
-0.3
341
Tumor
-0.3
487
Tumor
-0.3
185
Tumor
-0.4
527
Tumor
-0.4
661
Tumor
-0.4
563
Tumor
-0.4
383
Tumor
-0.4
881
Tumor
-0.4
515
Tumor
-0.4
385
Tumor
-0.4
125
Tumor
-0.4
285
Tumor
-0.4
491
Tumor
-0.4
983
Tumor
-0.4
221
Tumor
-0.4
375
Tumor
-0.4
473
Tumor
-0.4
467
Tumor
-0.4
213
Tumor
-0.4
483
Tumor
-0.4
943
Tumor
-0.4
697
Tumor
-0.4
192
Normal
-0.4
537
Tumor
-0.5
823
Tumor
-0.5
647
Tumor
-0.5
447
Tumor
-0.5
131
Tumor
-0.5
925
Tumor
-0.5
814
Normal
-0.5
455
Tumor
-0.5
191
Tumor
-0.5
331
Tumor
-0.5
313
Tumor
-0.5
351
Tumor
-0.5
975
Tumor
-0.6
343
Tumor
-0.6
545
Tumor
-0.6
395
Tumor
-0.7
965
Tumor
-0.7
297
Tumor
-0.7
567
Tumor
-0.7
815
Tumor
-0.8
443
Tumor
-0.8
957
Tumor
-0.8
135
Tumor
-0.8
283
Tumor
-0.9
1041
Tumor
-0.9
715
Tumor
-1.0
917
Tumor
-1.0
671
Tumor
-1.1
311
Tumor
-1.3
211
Tumor
-1.3
743
Tumor
-1.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.