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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NDUFB9 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
445.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1574.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1402.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1402.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
1285.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
1222.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1203.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1124.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
1103.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
1070.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1061.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
985.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
981.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
960.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
933.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
919.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
913.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
908.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
900.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
896.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
890.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
890.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
859.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
840.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
832.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
823.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
821.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
806.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
801.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
800.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
797.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
793.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
787.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
786.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
775.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
775.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
774.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
767.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
766.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
753.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
753.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
751.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
747.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
743.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
725.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
699.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
698.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
696.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
690.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
684.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
681.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
672.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
650.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
647.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
646.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
645.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
641.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
639.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
639.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
637.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
637.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
634.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
634.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
632.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
623.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
620.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
619.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
618.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
612.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
611.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
611.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
609.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
604.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
600.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
594.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
592.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
590.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
585.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
585.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
584.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
578.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
575.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
573.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
573.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
569.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
568.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
566.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
565.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
563.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
562.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
562.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
560.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
559.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
557.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
546.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
545.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
544.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
544.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
543.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
540.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
537.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
534.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
530.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
530.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
527.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
526.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
526.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
526.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
522.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
521.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
514.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
512.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
510.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
507.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
506.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
505.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
498.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
498.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
497.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
493.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
493.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
490.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
489.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
487.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
487.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
484.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
477.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
477.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
476.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
473.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
470.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
466.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
465.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
464.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
461.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
460.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
460.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
459.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
459.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
458.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
454.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
450.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
449.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
445.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
443.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
442.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
442.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
439.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
439.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
439.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
437.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
437.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
436.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
436.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
435.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
433.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
433.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
430.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
429.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
429.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
427.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
427.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
425.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
423.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
422.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
421.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
421.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
417.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
406.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
405.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
404.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
402.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
401.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
401.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
400.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
400.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
398.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
397.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
396.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
396.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
389.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
385.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
382.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
376.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
376.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
376.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
370.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
368.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
367.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
366.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
364.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
364.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
363.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
360.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
360.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
358.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
358.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
358.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
357.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
355.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
354.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
354.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
353.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
353.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
351.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
350.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
350.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
350.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
349.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
347.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
347.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
346.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
345.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
344.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
343.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
342.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
341.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
340.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
338.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
336.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
336.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
335.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
335.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
334.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
334.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
332.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
332.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
330.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
329.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
329.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
328.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
327.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
326.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
326.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
326.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
326.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
326.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
325.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
325.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
324.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
323.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
320.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
319.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
319.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
316.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
316.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
316.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
314.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
312.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
310.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
307.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
305.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
302.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
302.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
296.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
291.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
291.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
291.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
290.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
290.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
290.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
289.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
289.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
288.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
288.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
287.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
284.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
284.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
284.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
284.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
283.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
282.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
280.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
279.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
279.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
278.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
276.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
276.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
274.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
273.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
271.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
269.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
269.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
268.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
266.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
264.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
264.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
262.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
260.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
259.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
258.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
258.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
255.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
255.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
252.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
252.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
251.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
249.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
249.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
241.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
240.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
239.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
239.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
238.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
237.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
236.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
235.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
234.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
233.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
233.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
233.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
232.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
232.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
232.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
230.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
226.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
226.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
226.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
225.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
223.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
223.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
222.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
221.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
220.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
218.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
217.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
215.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
214.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
213.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
210.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
209.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
209.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
208.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
206.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
206.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
205.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
203.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
201.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
200.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
193.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
190.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
188.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
186.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
186.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
184.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
182.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
178.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
178.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
173.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
173.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
172.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
170.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
170.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
161.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
158.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
156.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
130.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
125.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
125.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
123.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
117.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
116.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NDUFB9 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
288.3
Number of samples
231
Samples
Sample
Description
TPM
DO23508
0 years, female, NA, stage:2, alive, 390 days
1390.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
1191.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
1086.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
955.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
922.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
875.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
858.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
813.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
792.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
786.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
686.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
674.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
667.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
662.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
658.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
657.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
649.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
646.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
644.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
640.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
623.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
613.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
582.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
561.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
561.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
551.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
544.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
537.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
516.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
459.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
446.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
432.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
431.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
427.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
426.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
423.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
421.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
419.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
418.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
409.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
403.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
393.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
386.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
377.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
364.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
361.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
359.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
351.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
342.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
340.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
340.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
332.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
331.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
325.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
325.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
318.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
313.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
313.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
312.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
311.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
310.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
305.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
301.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
299.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
299.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
298.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
298.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
296.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
291.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
285.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
282.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
280.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
275.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
274.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
273.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
271.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
270.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
270.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
270.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
267.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
266.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
266.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
265.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
264.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
263.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
263.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
261.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
260.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
257.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
256.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
254.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
253.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
250.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
249.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
249.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
246.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
245.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
245.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
245.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
243.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
243.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
242.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
242.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
241.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
241.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
240.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
238.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
237.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
236.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
236.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
234.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
233.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
232.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
231.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
230.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
228.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
227.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
227.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
225.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
225.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
223.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
223.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
221.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
221.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
219.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
219.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
217.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
217.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
216.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
214.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
213.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
212.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
212.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
208.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
207.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
207.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
205.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
204.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
203.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
203.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
201.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
199.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
199.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
199.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
199.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
198.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
196.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
196.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
193.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
191.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
191.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
190.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
190.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
187.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
187.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
185.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
185.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
185.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
185.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
184.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
184.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
184.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
183.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
182.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
181.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
181.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
179.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
179.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
179.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
179.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
178.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
177.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
176.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
175.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
173.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
172.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
166.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
164.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
164.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
160.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
159.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
157.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
157.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
156.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
154.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
153.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
153.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
152.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
149.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
148.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
148.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
146.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
145.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
141.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
140.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
139.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
139.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
137.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
137.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
134.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
134.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
134.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
132.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
131.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
130.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
128.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
128.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
126.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
125.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
125.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
123.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
121.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
121.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
116.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
116.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
115.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
114.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
112.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
111.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
109.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
107.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
105.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
104.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
102.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
101.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
99.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
96.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
94.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
92.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
85.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
72.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
473
Tumor
1.0
388
Normal
0.8
327
Tumor
0.7
1041
Tumor
0.7
915
Tumor
0.7
922
Normal
0.7
446
Normal
0.7
482
Normal
0.7
128
Normal
0.7
636
Normal
0.7
1022
Normal
0.7
1043
Tumor
0.6
356
Normal
0.6
267
Tumor
0.6
648
Normal
0.6
448
Normal
0.6
162
Normal
0.6
628
Normal
0.6
878
Normal
0.6
1028
Normal
0.6
432
Normal
0.6
664
Normal
0.6
642
Normal
0.6
426
Normal
0.6
914
Normal
0.6
466
Normal
0.6
258
Normal
0.6
944
Normal
0.6
866
Normal
0.5
272
Normal
0.5
358
Normal
0.5
666
Normal
0.5
713
Tumor
0.5
981
Tumor
0.5
278
Normal
0.5
616
Normal
0.5
328
Normal
0.5
394
Normal
0.5
698
Normal
0.5
714
Normal
0.5
1032
Normal
0.5
742
Normal
0.5
696
Normal
0.5
926
Normal
0.5
231
Tumor
0.5
738
Normal
0.5
196
Normal
0.5
396
Normal
0.5
728
Normal
0.5
451
Tumor
0.5
214
Normal
0.5
484
Normal
0.5
462
Normal
0.5
111
Normal
0.5
494
Normal
0.5
148
Normal
0.5
132
Normal
0.5
464
Normal
0.5
938
Normal
0.5
422
Normal
0.5
916
Normal
0.5
171
Tumor
0.5
816
Normal
0.4
818
Normal
0.4
222
Normal
0.4
478
Normal
0.4
864
Normal
0.4
571
Tumor
0.4
516
Normal
0.4
114
Normal
0.4
722
Normal
0.4
662
Normal
0.4
232
Normal
0.4
412
Normal
0.4
172
Normal
0.4
912
Normal
0.4
618
Normal
0.4
716
Normal
0.4
424
Normal
0.4
414
Normal
0.4
528
Normal
0.4
474
Normal
0.4
982
Normal
0.4
262
Normal
0.4
918
Normal
0.4
518
Normal
0.4
526
Normal
0.4
672
Normal
0.4
964
Normal
0.4
416
Normal
0.4
858
Normal
0.4
546
Normal
0.4
554
Normal
0.4
778
Normal
0.4
824
Normal
0.4
468
Normal
0.3
746
Normal
0.3
136
Normal
0.3
488
Normal
0.3
984
Normal
0.3
514
Normal
0.3
138
Normal
0.3
958
Normal
0.3
298
Normal
0.3
415
Tumor
0.3
617
Tumor
0.3
314
Normal
0.3
1014
Normal
0.3
376
Normal
0.3
342
Normal
0.3
286
Normal
0.3
366
Normal
0.3
212
Normal
0.3
364
Normal
0.3
472
Normal
0.3
686
Normal
0.3
924
Normal
0.3
756
Normal
0.3
312
Normal
0.3
444
Normal
0.3
126
Normal
0.3
557
Tumor
0.3
436
Normal
0.3
352
Normal
0.3
952
Normal
0.3
723
Tumor
0.3
913
Tumor
0.3
392
Normal
0.3
344
Normal
0.3
434
Normal
0.3
284
Normal
0.3
362
Normal
0.3
1026
Normal
0.3
568
Normal
0.3
228
Normal
0.3
188
Normal
0.2
1042
Normal
0.2
127
Tumor
0.2
1046
Normal
0.2
124
Normal
0.2
861
Tumor
0.2
786
Normal
0.2
146
Normal
0.2
354
Normal
0.2
874
Normal
0.2
867
Tumor
0.2
1016
Normal
0.2
968
Normal
0.2
142
Normal
0.2
1044
Normal
0.2
564
Normal
0.2
956
Normal
0.2
386
Normal
0.2
911
Tumor
0.2
882
Normal
0.2
452
Normal
0.2
852
Normal
0.2
428
Normal
0.2
368
Normal
0.2
695
Tumor
0.2
456
Normal
0.2
538
Normal
0.2
112
Tumor
0.2
423
Tumor
0.2
113
Tumor
0.2
868
Normal
0.1
218
Normal
0.1
384
Normal
0.1
715
Tumor
0.1
862
Normal
0.1
224
Normal
0.1
627
Tumor
0.1
873
Tumor
0.1
477
Tumor
0.1
966
Normal
0.1
355
Tumor
0.1
268
Normal
0.1
534
Normal
0.1
572
Normal
0.1
135
Tumor
0.1
261
Tumor
0.1
524
Normal
0.1
145
Tumor
0.1
341
Tumor
0.1
955
Tumor
0.1
615
Tumor
0.1
357
Tumor
0.1
195
Tumor
0.1
393
Tumor
0.1
721
Tumor
0.1
525
Tumor
0.1
647
Tumor
0.1
481
Tumor
0.1
954
Normal
0.1
487
Tumor
0.0
744
Normal
0.0
161
Tumor
0.0
192
Normal
0.0
558
Normal
0.0
884
Normal
0.0
755
Tumor
0.0
223
Tumor
0.0
976
Normal
0.0
367
Tumor
0.0
567
Tumor
0.0
445
Tumor
0.0
697
Tumor
0.0
1015
Tumor
0.0
395
Tumor
0.0
663
Tumor
0.0
435
Tumor
-0.1
536
Normal
-0.1
1021
Tumor
-0.1
573
Tumor
-0.1
574
Normal
-0.1
1031
Tumor
-0.1
963
Tumor
-0.1
978
Normal
-0.1
443
Tumor
-0.1
923
Tumor
-0.1
977
Tumor
-0.1
493
Tumor
-0.1
351
Tumor
-0.1
413
Tumor
-0.1
743
Tumor
-0.1
191
Tumor
-0.1
186
Normal
-0.1
353
Tumor
-0.2
217
Tumor
-0.2
498
Normal
-0.2
483
Tumor
-0.2
635
Tumor
-0.2
471
Tumor
-0.2
641
Tumor
-0.2
465
Tumor
-0.2
227
Tumor
-0.2
387
Tumor
-0.2
332
Normal
-0.2
492
Normal
-0.2
877
Tumor
-0.2
537
Tumor
-0.2
917
Tumor
-0.2
431
Tumor
-0.2
313
Tumor
-0.3
447
Tumor
-0.3
185
Tumor
-0.3
311
Tumor
-0.3
491
Tumor
-0.3
533
Tumor
-0.3
883
Tumor
-0.3
817
Tumor
-0.3
943
Tumor
-0.3
497
Tumor
-0.3
343
Tumor
-0.3
411
Tumor
-0.3
363
Tumor
-0.3
965
Tumor
-0.3
467
Tumor
-0.3
857
Tumor
-0.3
271
Tumor
-0.3
527
Tumor
-0.3
823
Tumor
-0.3
213
Tumor
-0.3
361
Tumor
-0.3
957
Tumor
-0.3
427
Tumor
-0.4
665
Tumor
-0.4
881
Tumor
-0.4
523
Tumor
-0.4
741
Tumor
-0.4
433
Tumor
-0.4
813
Tumor
-0.4
141
Tumor
-0.4
814
Normal
-0.4
553
Tumor
-0.4
187
Tumor
-0.4
257
Tumor
-0.4
391
Tumor
-0.4
724
Normal
-0.4
1027
Tumor
-0.4
1045
Tumor
-0.4
975
Tumor
-0.5
383
Tumor
-0.5
463
Tumor
-0.5
385
Tumor
-0.5
123
Tumor
-0.5
925
Tumor
-0.5
1025
Tumor
-0.5
563
Tumor
-0.5
785
Tumor
-0.5
815
Tumor
-0.5
277
Tumor
-0.5
517
Tumor
-0.5
983
Tumor
-0.5
421
Tumor
-0.5
461
Tumor
-0.5
671
Tumor
-0.6
951
Tumor
-0.6
937
Tumor
-0.6
921
Tumor
-0.6
131
Tumor
-0.6
375
Tumor
-0.6
545
Tumor
-0.6
865
Tumor
-0.6
661
Tumor
-0.6
863
Tumor
-0.6
297
Tumor
-0.7
455
Tumor
-0.7
211
Tumor
-0.7
953
Tumor
-0.7
147
Tumor
-0.7
137
Tumor
-0.7
851
Tumor
-0.7
285
Tumor
-0.7
1013
Tumor
-0.7
331
Tumor
-0.7
221
Tumor
-0.7
365
Tumor
-0.8
727
Tumor
-0.8
513
Tumor
-0.8
535
Tumor
-0.8
967
Tumor
-0.8
125
Tumor
-0.9
685
Tumor
-0.9
777
Tumor
-0.9
515
Tumor
-0.9
425
Tumor
-0.9
283
Tumor
-0.9
737
Tumor
-1.0
745
Tumor
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.