MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:126.6 nTPM
HPA Brain:227.6 nTPM
GTEx:126.6 nTPM
FANTOM5:84.2 Scaled Tags Per Million
Pig:236.7 nTPM
Mouse:540.1 nTPM
Allen mouse:11.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 227.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 127.1
2666 Male, age 74, left hemisphere 159.5
1827 Male, age 72, unknown 154.3
2219 Male, age 76, both hemispheres 149.2
2019 Male, age 18, unknown 144.0
2411 Female, age 72, unknown 137.1
2828 Female, age 72, unknown 111.7
1833 Male, age 53, unknown 108.0
1870 Female, age 42, unknown 105.8
2586 Male, age 75, left hemisphere 105.8
1830 Male, age 51, unknown 96.0
Dorsal raphe nucleus
nTPM: 138.6
2298 Female, age 72, unknown 198.6
1828 Male, age 53, unknown 140.5
2047 Male, age 72, unknown 133.3
2750 Male, age 76, both hemispheres 129.5
2016 Female, age 72, unknown 91.3
Inferior colliculus
nTPM: 110.2
2097 Female, age 72, unknown 141.9
1848 Female, age 42, unknown 106.0
1890 Male, age 53, unknown 103.9
2849 Male, age 72, unknown 89.2
Median raphe nucleus
nTPM: 156.0
2220 Male, age 76, midline 156.0
Periaquaductal grey, anterior
nTPM: 136.6
1795 Male, age 51, unknown 148.7
1947 Male, age 18, unknown 145.5
2502 Female, age 75, unknown 115.6
Periaquaductal grey, dorsal
nTPM: 102.5
1840 Male, age 53, unknown 120.9
2464 Female, age 72, unknown 101.7
1831 Male, age 72, unknown 101.6
2850 Male, age 76, both hemispheres 86.0
Periaquaductal grey, lateral
nTPM: 104.2
2272 Male, age 74, both hemispheres 129.2
2053 Male, age 18, unknown 98.3
2140 Male, age 76, both hemispheres 85.1
Pretectal area
nTPM: 148.1
1816 Male, age 51, unknown 223.0
2007 Male, age 72, unknown 192.1
1944 Female, age 72, unknown 191.0
1817 Female, age 42, unknown 181.2
1815 Male, age 53, unknown 161.8
2224 Female, age 72, unknown 144.2
2667 Female, age 75, unknown 127.2
2273 Male, age 74, both hemispheres 118.1
2825 Male, age 18, unknown 106.0
2407 Male, age 75, both hemispheres 101.1
2316 Male, age 76, right hemisphere 83.6
Red nucleus
nTPM: 110.2
1821 Female, age 72, unknown 164.1
2725 Female, age 75, unknown 132.3
2785 Male, age 18, unknown 122.1
1954 Female, age 42, unknown 118.9
2584 Male, age 75, left hemisphere 113.1
1904 Male, age 53, unknown 102.9
2503 Female, age 72, unknown 102.1
2227 Male, age 72, unknown 99.7
2769 Male, age 72, unknown 98.2
1865 Male, age 51, unknown 97.9
2588 Male, age 74, left hemisphere 85.4
2823 Male, age 76, right hemisphere 85.1
Substantia nigra
nTPM: 227.6
1916 Female, age 42, unknown 394.0
2241 Male, age 72, unknown 304.5
1851 Male, age 51, unknown 250.4
2409 Female, age 72, unknown 242.9
1941 Male, age 53, unknown 223.9
1889 Female, age 72, unknown 200.8
2699 Male, age 18, unknown 176.1
2590 Female, age 75, unknown 170.6
2665 Male, age 74, both hemispheres 161.8
2583 Male, age 75, right hemisphere 151.0
Superior colliculus
nTPM: 122.6
2087 Female, age 72, unknown 166.4
2668 Female, age 75, unknown 162.6
1796 Male, age 53, unknown 154.5
2261 Male, age 18, unknown 147.5
2587 Male, age 74, left hemisphere 114.8
1895 Male, age 76, right hemisphere 113.0
1839 Male, age 51, unknown 106.5
2664 Male, age 75, both hemispheres 94.3
1913 Female, age 42, unknown 91.7
1995 Male, age 72, unknown 74.7
Ventral tegmental area
nTPM: 174.4
2410 Female, age 72, unknown 263.8
1915 Female, age 42, unknown 233.6
2218 Male, age 76, both hemispheres 200.7
1942 Male, age 51, unknown 132.4
2021 Male, age 53, unknown 110.0
2223 Female, age 72, unknown 105.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 126.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 126.6
Samples: 139

Max nTPM: 498.9
Min nTPM: 29.6
Std nTPM: 94.7
Median nTPM: 90.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 498.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 496.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 431.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 377.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 355.4
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 349.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 319.4
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 297.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 292.3
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 288.4
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 283.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 84.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 84.2
FF:10158-103A5 76 years, female 84.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 236.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 218.2
Samples: 4

Max nTPM: 317.5
Min nTPM: 98.4
Sample A Female 317.5
Sample B Female 156.7
Sample C Male 300.0
Sample D Male 98.4
Midbrain
nTPM: 219.3
Samples: 4

Max nTPM: 323.5
Min nTPM: 126.4
Sample A Female 126.4
Sample B Female 170.6
Sample C Male 323.5
Sample D Male 256.7
Periaqueductal gray
nTPM: 168.1
Samples: 3

Max nTPM: 209.5
Min nTPM: 144.2
Sample B Female 150.5
Sample C Male 209.5
Sample D Male 144.2
Superior colliculi
nTPM: 236.7
Samples: 4

Max nTPM: 321.2
Min nTPM: 149.5
Sample A Female 246.2
Sample B Female 149.5
Sample C Male 321.2
Sample D Male 229.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 540.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 540.1
Samples: 4

Max nTPM: 556.3
Min nTPM: 533.9
Sample A Male 533.9
Sample B Male 556.3
Sample C Female 535.8
Sample D Female 534.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 11.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 11.2
130 Antisense, RP_040315_01_14, Mouse strain C57BL/6J (56 days, male) 11.2
129 Antisense, RP_040315_01_14, Mouse strain C57BL/6J (56 days, male) 10.8

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