Subcellular - NONO - The Human Protein Atlas

GENERAL INFORMATIONⁱ General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.
Gene nameⁱ Official gene symbol, which is typically a short form of the gene name, according to HGNC.	NONO
Gene descriptionⁱ Full gene name according to HGNC.	Non-POU domain containing octamer binding
Protein classⁱ Assigned HPA protein class(es) for the encoded protein(s).	Cancer-related genes Disease related genes Human disease related genes Plasma proteins Transcription factors
Predicted locationⁱ All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions. Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached. Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s). The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.	Intracellular
Number of transcriptsⁱ Number of protein-coding transcripts from the gene as defined by Ensembl.	18

HUMAN PROTEIN ATLAS INFORMATIONⁱ Summary of RNA expression and protein localization based on data generated within the Human Protein Atlas project.
Main locationⁱ Main subcellular location(s) and reliability score(s) for the encoded protein(s) in human cells. The main location(s) may be characterized by presence in all tested cell lines and/or ihigher staining intensity compared to the potential additional location(s). If available, links to overrepresentation analyses in Reactome, a free, open-source, curated and peer reviewed biological pathway database, are provided. An analysis is done for the corresponding gene set of the proteome localizing to the main and additional locations of the protein on this page, respectively.	Localized to the Nucleoplasm (enhanced)
Additional locationⁱ Additonal subcellular location(s) for the encoded protein(s) in human cells. The additional location(s) may not be present i all cell lines and may have lower staining intensity compared to the main location(s). If available, links to overrepresentation analyses in Reactome, a free, open-source, curated and peer reviewed biological pathway database, are provided. An analysis is done for the corresponding gene set of the proteome localizing to the main and additional locations of the protein on this page, respectively.	In addition localized to the Nucleoli (supported), Nucleoli fibrillar center (enhanced)
Single-cell variationⁱ Single-cell variations in protein expression levels or distribution observed between cells within the same images of human cells stained by immunocytochemistry.	Single-cell variation in protein expression observed.
siRNAⁱ Validation score for the subcellular location(s) of the encoded proteins(s) according to siRNA validation.	The location(s) are Enhanced based on siRNA mediated gene silencing.
Mouseⁱ Subcellular location for the protein(s) encoded by orthologous genes in mouse cells.	Localized to the Nucleoplasm, Nuclear speckles in mouse cells.
Reliability scoreⁱ Overall gene reliability score for the subcellular location(s) of the encoded protein(s). The score indicates the level of reliability of the annotated protein localization based on agreement with available experimental gene/protein characterization data in the UniProtKB/Swiss-Prot database and presence of antibody validation assays for immunocytochemistry.	Enhanced
Antibodiesⁱ Antibodies used for this assay. Click on an antibody for more information.	CAB022069 , HPA054094 , HPA054559
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ASSAYSⁱ

Summaryⁱ

Mainly localized to the nucleoplasm. In addition localized to the nucleoli and nucleoli fibrillar center.

Main locationⁱ

Nucleoplasm (enhanced)

Additional locationⁱ

Nucleoli (supported), Nucleoli fibrillar center (enhanced)

Human cell lines

siRNA

Mouse cells

RNA expression

HUMAN CELL LINESⁱ


	Toggle channelsⁱ Buttons for turning on and off the different channels in the multi-color images. The intensity toggle shows the pixel intensity range in 16 different colors for the selected channel. The object toggle shows the computational segmentation of the cells used for further analysis in the HPA project. For samples where cell cycle dependency for the protein is suggested according to a correlation assay the predicted cell cycle position of each cell is displayed when using the object toggle.	Low High

Antibodyⁱ Antibody used for analysis. Clicking the antibody ID links to the antibody validation page.	Cell lineⁱ Cell line used for analysis. Read more about the cell lines in the Human Protein Atlas.	Cell line RNA Expression (nTPM)ⁱ RNA expression level in the cell line based on normalised RNA sequencing data. Genes with a value above 1 NX are considered to be expressed.	Locationⁱ Observed subcellular location(s).	Single-cell variationⁱ Observed single-cell variation(s) in the staining pattern. Variation in protein expression levels can be observed as varaiations in the intensity of the immunofluorescent signal, while spatial variations can be observed as variations in subcellular distribution of the protein.
CAB022069	A-431	396.6	Nucleoplasm
CAB022069	U-251MG	375.2	Nucleoplasm
CAB022069	U2OS	460.1	Nucleoplasm
CAB022069	U2OS	460.1	Nucleoli
HPA054094	A-431	396.6	Nucleoplasm
HPA054094	U-251MG	375.2	Nucleoplasm
HPA054094	U2OS	460.1	Nucleoplasm
HPA054559	HeLa	541.2	Nucleoplasm
HPA054559	U-251MG	375.2	Nucleoplasm
HPA054559	U2OS	460.1	Nucleoplasm
HPA054559	U2OS	460.1	Nucleoli fibrillar center	Yes

siRNA VALIDATIONⁱ

Antibodyⁱ

HPA054559

siRNA validationⁱ

Enhanced: Significant downregulation > 25% by both siRNA:s.

Analysis performed inⁱ

Nuclear region of segmented cells in 10x-images

siRNA 1ⁱ

siRNA 2ⁱ

RFIⁱ

40%

56%

p-valueⁱ

< 0.01


	Toggle channelsⁱ Buttons for turning on and off the different channels in the multi-color images. The intensity toggle shows the pixel intensity range in 16 different colors for the selected channel. The antibody and intensity channel toggle can be used to further illustrate the intensity downregulation when comparing images from scrambled and targeting siRNA samples in the images. The object toggle shows the segmentation compartment in which the change in intensity after siRNA downregulation was measured.	Low High

Antibodyⁱ Antibody used for analysis. Clicking the antibody ID links to the antibody validation page.	Sampleⁱ siRNA that was used for the analysis.	Cell lineⁱ Cell line used for analysis. Read more about the cell lines in the Human Protein Atlas.
HPA054559	siRNA 2	U2OS
HPA054559	scrambled	U2OS
HPA054559	siRNA 1	U2OS

MOUSE CELLSⁱ

Main locationⁱ

Nucleoplasm, Nuclear speckles

Mouse geneⁱ

ENSMUSG00000031311 (version 10)


	Toggle channelsⁱ Buttons for turning on and off the different channels in the multi-color images. The intensity toggle shows the pixel intensity range in 16 different colors for the selected channel. The object toggle shows the computational segmentation of the cells used for further analysis in the HPA project. For samples where cell cycle dependency for the protein is suggested according to a correlation assay the predicted cell cycle position of each cell is displayed when using the object toggle.	Low High

Antibodyⁱ Antibody used for analysis. Clicking the antibody ID links to the antibody validation page.	Cell lineⁱ Cell line used for analysis. Read more about the cell lines in the Human Protein Atlas.	Locationⁱ Observed subcellular location(s).
HPA054094	NIH 3T3	Nucleoplasm
HPA054559	NIH 3T3	Nucleoplasm
HPA054559	NIH 3T3	Nuclear speckles

RNA EXPRESSION OVERVIEWⁱ

Organ

Origin