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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NONO is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
108.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
655.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
407.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
346.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
343.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
332.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
298.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
285.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
278.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
277.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
246.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
243.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
238.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
234.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
234.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
233.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
228.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
226.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
223.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
221.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
220.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
217.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
217.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
216.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
216.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
214.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
209.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
208.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
207.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
201.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
200.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
197.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
195.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
194.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
194.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
192.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
192.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
187.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
187.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
185.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
181.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
178.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
177.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
176.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
176.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
174.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
174.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
174.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
173.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
172.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
170.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
170.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
170.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
169.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
168.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
168.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
165.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
165.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
163.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
163.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
160.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
160.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
160.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
160.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
158.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
158.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
157.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
157.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
156.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
154.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
154.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
153.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
152.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
152.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
152.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
152.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
151.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
150.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
149.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
149.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
148.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
146.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
143.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
143.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
142.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
142.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
139.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
139.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
137.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
135.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
134.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
134.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
133.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
133.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
132.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
130.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
130.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
129.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
129.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
128.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
128.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
126.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
126.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
126.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
123.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
123.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
123.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
122.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
122.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
120.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
120.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
120.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
119.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
119.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
119.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
118.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
118.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
117.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
117.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
117.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
116.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
115.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
115.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
114.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
114.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
113.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
113.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
112.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
111.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
110.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
110.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
109.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
109.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
109.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
109.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
108.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
108.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
107.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
107.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
106.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
106.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
106.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
106.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
106.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
105.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
105.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
105.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
105.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
104.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
103.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
103.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
102.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
101.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
100.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
99.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
99.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
98.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
98.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
98.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
97.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
97.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
97.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
96.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
96.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
96.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
96.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
96.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
95.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
95.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
95.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
95.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
94.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
94.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
94.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
94.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
94.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
93.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
93.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
93.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
93.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
92.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
92.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
92.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
92.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
92.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
92.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
91.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
91.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
91.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
91.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
90.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
90.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
89.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
88.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
88.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
88.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
87.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
87.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
87.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
86.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
86.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
85.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
85.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
85.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
85.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
84.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
84.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
84.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
83.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
82.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
82.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
82.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
82.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
82.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
81.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
81.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
81.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
81.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
81.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
80.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
80.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
80.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
79.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
79.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
79.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
78.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
78.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
77.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
77.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
76.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
76.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
76.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
76.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
75.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
75.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
75.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
75.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
74.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
74.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
74.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
74.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
74.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
74.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
74.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
74.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
73.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
73.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
73.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
72.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
72.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
72.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
72.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
72.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
72.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
71.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
71.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
71.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
71.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
71.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
70.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
70.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
70.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
69.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
69.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
69.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
69.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
69.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
69.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
69.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
68.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
67.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
66.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
66.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
66.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
66.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
66.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
64.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
64.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
63.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
63.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
63.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
62.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
62.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
61.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
61.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
61.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
61.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
60.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
60.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
59.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
59.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
59.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
59.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
58.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
58.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
58.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
58.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
58.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
57.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
57.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
57.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
57.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
57.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
56.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
56.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
56.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
56.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
55.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
54.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
54.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
52.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
52.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
52.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
52.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
51.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
50.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
50.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
50.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
50.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
49.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
49.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
49.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
48.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
48.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
47.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
47.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
47.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
46.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
46.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
46.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
46.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
45.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
44.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
44.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
42.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
42.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
42.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
40.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
40.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
40.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
40.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
39.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
39.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
38.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
37.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
35.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
34.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
34.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
34.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
32.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
32.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
32.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
31.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
31.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
31.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
30.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
29.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
28.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
26.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
25.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
21.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
17.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NONO is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
95.9
Number of samples
231
Samples
Sample
Description
TPM
DO45193
0 years, female, NA, stage:4, dead, 120 days
265.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
240.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
235.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
227.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
204.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
197.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
192.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
187.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
183.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
180.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
178.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
175.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
171.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
164.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
159.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
157.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
156.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
154.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
150.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
150.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
150.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
148.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
148.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
147.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
146.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
145.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
144.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
143.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
140.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
139.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
138.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
138.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
138.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
138.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
137.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
137.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
135.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
134.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
134.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
131.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
131.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
129.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
126.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
125.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
124.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
124.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
124.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
123.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
121.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
120.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
119.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
118.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
118.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
117.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
116.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
115.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
114.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
114.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
114.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
114.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
113.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
113.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
112.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
112.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
111.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
111.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
111.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
110.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
110.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
109.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
109.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
108.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
107.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
107.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
105.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
105.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
104.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
104.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
104.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
103.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
103.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
103.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
102.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
101.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
100.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
99.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
99.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
98.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
98.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
98.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
97.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
97.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
97.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
97.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
97.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
96.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
96.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
95.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
95.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
95.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
94.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
94.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
94.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
94.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
94.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
93.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
93.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
91.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
90.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
90.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
90.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
90.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
90.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
90.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
89.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
89.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
88.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
87.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
87.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
86.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
86.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
86.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
86.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
85.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
84.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
83.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
83.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
83.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
82.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
82.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
82.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
82.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
81.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
80.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
80.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
79.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
79.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
79.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
78.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
77.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
77.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
77.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
76.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
76.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
76.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
75.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
75.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
75.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
74.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
74.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
74.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
73.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
73.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
73.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
73.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
72.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
71.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
71.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
71.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
70.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
70.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
70.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
70.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
69.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
69.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
69.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
69.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
68.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
68.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
67.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
67.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
66.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
66.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
66.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
65.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
65.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
65.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
64.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
64.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
64.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
64.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
62.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
62.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
62.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
62.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
61.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
61.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
61.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
61.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
61.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
60.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
60.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
60.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
60.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
60.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
59.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
59.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
58.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
58.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
58.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
58.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
58.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
57.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
57.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
57.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
55.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
55.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
54.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
54.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
53.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
53.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
52.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
51.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
51.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
50.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
50.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
49.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
48.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
48.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
47.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
47.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
46.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
46.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
45.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
42.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
42.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
41.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
41.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
35.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
33.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
30.0
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LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
965
Tumor
0.9
131
Tumor
0.7
497
Tumor
0.7
545
Tumor
0.7
957
Tumor
0.7
983
Tumor
0.6
367
Tumor
0.6
647
Tumor
0.6
425
Tumor
0.6
355
Tumor
0.6
473
Tumor
0.6
951
Tumor
0.6
1013
Tumor
0.6
351
Tumor
0.6
285
Tumor
0.6
537
Tumor
0.6
865
Tumor
0.6
695
Tumor
0.5
661
Tumor
0.5
123
Tumor
0.5
411
Tumor
0.5
737
Tumor
0.5
443
Tumor
0.5
921
Tumor
0.5
777
Tumor
0.5
977
Tumor
0.5
313
Tumor
0.4
487
Tumor
0.4
1031
Tumor
0.4
685
Tumor
0.4
463
Tumor
0.4
527
Tumor
0.4
923
Tumor
0.4
493
Tumor
0.4
1021
Tumor
0.4
331
Tumor
0.4
937
Tumor
0.4
112
Tumor
0.4
523
Tumor
0.4
727
Tumor
0.4
943
Tumor
0.4
413
Tumor
0.4
877
Tumor
0.4
535
Tumor
0.4
743
Tumor
0.4
211
Tumor
0.4
161
Tumor
0.4
277
Tumor
0.4
815
Tumor
0.3
785
Tumor
0.3
967
Tumor
0.3
447
Tumor
0.3
533
Tumor
0.3
1041
Tumor
0.3
881
Tumor
0.3
953
Tumor
0.3
817
Tumor
0.3
665
Tumor
0.3
431
Tumor
0.3
483
Tumor
0.3
283
Tumor
0.3
883
Tumor
0.3
975
Tumor
0.3
525
Tumor
0.3
221
Tumor
0.3
357
Tumor
0.3
171
Tumor
0.3
913
Tumor
0.3
271
Tumor
0.3
427
Tumor
0.3
341
Tumor
0.3
385
Tumor
0.3
1025
Tumor
0.3
467
Tumor
0.3
557
Tumor
0.2
471
Tumor
0.2
671
Tumor
0.2
724
Normal
0.2
925
Tumor
0.2
477
Tumor
0.2
755
Tumor
0.2
553
Tumor
0.2
517
Tumor
0.2
715
Tumor
0.2
135
Tumor
0.2
571
Tumor
0.2
515
Tumor
0.2
383
Tumor
0.2
814
Normal
0.2
227
Tumor
0.2
363
Tumor
0.2
663
Tumor
0.2
873
Tumor
0.2
391
Tumor
0.2
267
Tumor
0.2
635
Tumor
0.2
867
Tumor
0.2
375
Tumor
0.2
911
Tumor
0.2
917
Tumor
0.2
491
Tumor
0.2
393
Tumor
0.2
231
Tumor
0.2
863
Tumor
0.1
455
Tumor
0.1
297
Tumor
0.1
481
Tumor
0.1
813
Tumor
0.1
1045
Tumor
0.1
963
Tumor
0.1
185
Tumor
0.1
1015
Tumor
0.1
433
Tumor
0.1
387
Tumor
0.1
465
Tumor
0.1
861
Tumor
0.1
697
Tumor
0.1
524
Normal
0.1
415
Tumor
0.1
641
Tumor
0.1
915
Tumor
0.1
461
Tumor
0.1
567
Tumor
0.1
713
Tumor
0.1
513
Tumor
0.1
478
Normal
0.1
573
Tumor
0.1
492
Normal
0.1
981
Tumor
0.1
141
Tumor
0.1
563
Tumor
0.1
538
Normal
0.1
311
Tumor
0.1
823
Tumor
0.0
343
Tumor
0.0
125
Tumor
0.0
741
Tumor
0.0
261
Tumor
0.0
423
Tumor
0.0
857
Tumor
0.0
217
Tumor
0.0
851
Tumor
0.0
916
Normal
0.0
534
Normal
0.0
498
Normal
0.0
1043
Tumor
0.0
484
Normal
0.0
451
Tumor
0.0
554
Normal
0.0
421
Tumor
0.0
536
Normal
0.0
127
Tumor
0.0
964
Normal
0.0
954
Normal
0.0
1014
Normal
0.0
482
Normal
0.0
435
Tumor
0.0
213
Tumor
0.0
528
Normal
0.0
696
Normal
0.0
223
Tumor
0.0
958
Normal
0.0
984
Normal
0.0
395
Tumor
0.0
472
Normal
0.0
721
Tumor
0.0
955
Tumor
0.0
488
Normal
0.0
1027
Tumor
-0.1
137
Tumor
-0.1
926
Normal
-0.1
756
Normal
-0.1
878
Normal
-0.1
1042
Normal
-0.1
617
Tumor
-0.1
361
Tumor
-0.1
615
Tumor
-0.1
327
Tumor
-0.1
686
Normal
-0.1
1032
Normal
-0.1
113
Tumor
-0.1
514
Normal
-0.1
716
Normal
-0.1
1028
Normal
-0.1
384
Normal
-0.1
714
Normal
-0.1
284
Normal
-0.1
728
Normal
-0.1
966
Normal
-0.1
212
Normal
-0.1
147
Tumor
-0.1
944
Normal
-0.1
494
Normal
-0.1
978
Normal
-0.1
526
Normal
-0.1
938
Normal
-0.1
982
Normal
-0.1
968
Normal
-0.1
142
Normal
-0.1
516
Normal
-0.1
918
Normal
-0.1
365
Tumor
-0.1
474
Normal
-0.1
924
Normal
-0.1
882
Normal
-0.1
546
Normal
-0.1
448
Normal
-0.1
1026
Normal
-0.1
884
Normal
-0.1
328
Normal
-0.1
912
Normal
-0.1
786
Normal
-0.1
192
Normal
-0.1
444
Normal
-0.1
518
Normal
-0.1
922
Normal
-0.1
353
Tumor
-0.1
257
Tumor
-0.1
187
Tumor
-0.1
145
Tumor
-0.1
818
Normal
-0.1
445
Tumor
-0.1
1046
Normal
-0.1
738
Normal
-0.2
412
Normal
-0.2
558
Normal
-0.2
364
Normal
-0.2
866
Normal
-0.2
778
Normal
-0.2
976
Normal
-0.2
824
Normal
-0.2
1022
Normal
-0.2
1016
Normal
-0.2
224
Normal
-0.2
344
Normal
-0.2
868
Normal
-0.2
352
Normal
-0.2
858
Normal
-0.2
268
Normal
-0.2
746
Normal
-0.2
862
Normal
-0.2
572
Normal
-0.2
698
Normal
-0.2
356
Normal
-0.2
195
Tumor
-0.2
146
Normal
-0.2
742
Normal
-0.2
852
Normal
-0.2
191
Tumor
-0.2
636
Normal
-0.2
196
Normal
-0.2
723
Tumor
-0.2
568
Normal
-0.2
462
Normal
-0.2
222
Normal
-0.2
434
Normal
-0.2
744
Normal
-0.2
456
Normal
-0.2
342
Normal
-0.2
416
Normal
-0.2
564
Normal
-0.2
627
Tumor
-0.2
376
Normal
-0.2
874
Normal
-0.2
956
Normal
-0.2
218
Normal
-0.2
396
Normal
-0.2
745
Tumor
-0.2
228
Normal
-0.2
864
Normal
-0.2
298
Normal
-0.2
136
Normal
-0.2
422
Normal
-0.2
286
Normal
-0.2
1044
Normal
-0.2
628
Normal
-0.2
368
Normal
-0.2
388
Normal
-0.3
138
Normal
-0.3
662
Normal
-0.3
722
Normal
-0.3
312
Normal
-0.3
466
Normal
-0.3
464
Normal
-0.3
428
Normal
-0.3
574
Normal
-0.3
366
Normal
-0.3
314
Normal
-0.3
358
Normal
-0.3
952
Normal
-0.3
616
Normal
-0.3
914
Normal
-0.3
162
Normal
-0.3
362
Normal
-0.3
128
Normal
-0.3
262
Normal
-0.3
664
Normal
-0.3
214
Normal
-0.3
452
Normal
-0.3
392
Normal
-0.3
114
Normal
-0.3
672
Normal
-0.3
172
Normal
-0.3
126
Normal
-0.3
124
Normal
-0.3
436
Normal
-0.3
816
Normal
-0.3
642
Normal
-0.3
354
Normal
-0.3
386
Normal
-0.3
188
Normal
-0.3
424
Normal
-0.3
332
Normal
-0.3
278
Normal
-0.3
618
Normal
-0.3
186
Normal
-0.3
232
Normal
-0.3
258
Normal
-0.3
111
Normal
-0.3
446
Normal
-0.3
432
Normal
-0.3
414
Normal
-0.3
468
Normal
-0.3
394
Normal
-0.3
426
Normal
-0.3
132
Normal
-0.4
666
Normal
-0.4
272
Normal
-0.4
148
Normal
-0.4
648
Normal
-0.4
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.