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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HDAC8 is potential prognostic, high expression is unfavorable in Kidney Chromophobe (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.4
Number of samples
64
Samples
Sample
Description
TPM
TCGA-KO-8411-01A
0 years, male, white, stage:Stage I, alive, 3958 days
36.9
TCGA-KL-8331-01A
0 years, female, white, stage:Stage II, alive, 3010 days
33.9
TCGA-KL-8343-01A
0 years, male, white, stage:Stage III, dead, 2172 days
29.4
TCGA-KN-8426-01A
0 years, male, white, stage:Stage IV, alive, 108 days
28.1
TCGA-KL-8336-01A
0 years, female, white, stage:Stage IV, dead, 920 days
26.7
TCGA-KL-8338-01A
0 years, male, white, stage:Stage III, alive, 2633 days
26.4
TCGA-KN-8432-01A
0 years, female, white, stage:Stage II, alive, 76 days
25.8
TCGA-KO-8408-01A
0 years, male, white, stage:Stage III, dead, 507 days
24.6
TCGA-KN-8429-01A
0 years, female, white, stage:Stage III, alive, 2650 days
24.6
TCGA-KN-8423-01A
0 years, male, white, stage:Stage I, alive, 788 days
23.4
TCGA-KL-8341-01A
0 years, male, asian, stage:Stage IV, dead, 754 days
22.9
TCGA-KN-8424-01A
0 years, female, white, stage:Stage I, alive, 1983 days
21.9
TCGA-KN-8436-01A
0 years, male, white, stage:Stage II, alive, 1288 days
21.3
TCGA-KN-8419-01A
0 years, male, black or african american, stage:Stage II, alive, 714 days
20.3
TCGA-KL-8332-01A
0 years, male, white, stage:Stage I, alive, 2582 days
20.2
TCGA-KM-8639-01A
0 years, male, white, stage:Stage I, alive, 953 days
19.7
TCGA-KL-8325-01A
0 years, female, white, stage:Stage II, dead, 725 days
16.3
TCGA-KL-8339-01A
0 years, male, white, stage:Stage IV, dead, 855 days
16.0
TCGA-KM-8439-01A
0 years, male, white, stage:Stage I, alive, 708 days
16.0
TCGA-KN-8433-01A
0 years, female, white, stage:Stage III, alive, 341 days
15.7
TCGA-KO-8404-01A
0 years, male, white, stage:Stage IV, dead, 325 days
15.4
TCGA-KO-8413-01A
0 years, male, white, stage:Stage I, alive, 3038 days
15.0
TCGA-KL-8323-01A
0 years, female, white, stage:Stage III, dead, 1158 days
14.8
TCGA-KN-8418-01A
0 years, female, white, stage:Stage II, alive, 3935 days
14.8
TCGA-KO-8406-01A
0 years, female, white, stage:Stage I, alive, 3145 days
14.3
TCGA-KM-8441-01A
0 years, female, white, stage:Stage I, alive, 876 days
14.2
TCGA-KO-8417-01A
0 years, female, white, stage:Stage I, alive, 2815 days
14.2
TCGA-KN-8421-01A
0 years, female, white, stage:Stage II, alive, 2674 days
13.3
TCGA-KL-8334-01A
0 years, female, white, stage:Stage III, alive, 2949 days
13.1
TCGA-KL-8342-01A
0 years, female, white, stage:Stage II, alive, 2248 days
13.0
TCGA-KM-8442-01A
0 years, male, stage:Stage II, alive, 1437 days
12.9
TCGA-KN-8434-01A
0 years, female, white, stage:Stage II, alive, 1797 days
12.6
TCGA-KN-8437-01A
0 years, female, white, stage:Stage I, alive, 3068 days
11.9
TCGA-KN-8435-01A
0 years, male, white, stage:Stage II, alive, 3498 days
11.8
TCGA-KO-8407-01A
0 years, male, white, stage:Stage II, alive, 2820 days
11.7
TCGA-KL-8330-01A
0 years, female, black or african american, stage:Stage II, alive, 3304 days
11.7
TCGA-KL-8344-01A
0 years, male, white, stage:Stage III, alive, 876 days
11.6
TCGA-KL-8345-01A
0 years, male, white, stage:Stage III, alive, 1665 days
11.4
TCGA-KO-8409-01A
0 years, male, white, stage:Stage II, alive, 3180 days
11.1
TCGA-KO-8410-01A
0 years, female, white, stage:Stage I, alive, 3136 days
10.9
TCGA-KM-8440-01A
0 years, male, black or african american, stage:Stage III, alive, 1366 days
10.8
TCGA-KN-8428-01A
0 years, male, white, stage:Stage II, dead, 1590 days
10.5
TCGA-KN-8425-01A
0 years, male, white, stage:Stage I, alive, 3179 days
10.4
TCGA-KO-8405-01A
0 years, male, white, stage:Stage III, alive, 3056 days
10.1
TCGA-KL-8329-01A
0 years, female, asian, stage:Stage I, alive, 2752 days
9.9
TCGA-KO-8415-01A
0 years, female, white, stage:Stage I, alive, 2939 days
9.7
TCGA-KN-8431-01A
0 years, female, stage:Stage II, alive, 588 days
9.7
TCGA-KL-8346-01A
0 years, male, white, stage:Stage II, alive, 1897 days
9.7
TCGA-KO-8403-01A
0 years, male, white, stage:Stage I, alive, 3208 days
9.4
TCGA-KO-8414-01A
0 years, female, white, stage:Stage II, alive, 3212 days
9.4
TCGA-KM-8476-01A
0 years, male, white, stage:Stage I, alive, 3745 days
9.1
TCGA-KL-8328-01A
0 years, male, white, stage:Stage II, alive, 3127 days
8.9
TCGA-KM-8438-01A
0 years, female, white, stage:Stage II, alive, 4622 days
8.8
TCGA-KL-8324-01A
0 years, female, white, stage:Stage II, alive, 4676 days
8.7
TCGA-KL-8340-01A
0 years, male, white, stage:Stage II, alive, 2024 days
8.3
TCGA-KL-8335-01A
0 years, male, white, stage:Stage III, alive, 2815 days
8.1
TCGA-KM-8443-01A
0 years, male, white, stage:Stage II, alive, 1520 days
7.9
TCGA-KO-8416-01A
0 years, male, white, stage:Stage III, alive, 2752 days
7.8
TCGA-KL-8337-01A
0 years, male, black or african american, stage:Stage II, alive, 1364 days
7.4
TCGA-KM-8477-01A
0 years, male, white, stage:Stage I, alive, 1553 days
6.7
TCGA-KL-8327-01A
0 years, female, white, stage:Stage I, alive, 4169 days
6.5
TCGA-KN-8427-01A
0 years, male, white, stage:Stage IV, alive, 30 days
5.0
TCGA-KL-8333-01A
0 years, male, white, stage:Stage II, alive, 2991 days
1.6
TCGA-KL-8326-01A
0 years, male, white, stage:Stage III, alive, 3322 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HDAC8 is not prognostic in Kidney Renal Clear Cell Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.5
Number of samples
521
Samples
Sample
Description
TPM
TCGA-B0-4696-01A
0 years, male, white, stage:Stage III, dead, 866 days
32.3
TCGA-B0-4688-01A
0 years, male, white, stage:Stage IV, dead, 101 days
28.6
TCGA-CZ-4865-01A
0 years, female, white, stage:Stage I, dead, 166 days
23.9
TCGA-CJ-4882-01A
0 years, male, black or african american, stage:Stage III, alive, 1883 days
21.4
TCGA-CZ-5458-01A
0 years, male, white, stage:Stage III, alive, 2789 days
20.2
TCGA-B0-4699-01A
0 years, male, white, stage:Stage IV, dead, 110 days
19.4
TCGA-BP-4351-01A
0 years, female, white, stage:Stage III, alive, 970 days
19.1
TCGA-B0-5092-01A
0 years, female, white, stage:Stage IV, dead, 459 days
18.6
TCGA-B0-4945-01A
0 years, female, white, stage:Stage I, dead, 2145 days
18.5
TCGA-B0-4698-01A
0 years, male, white, stage:Stage IV, dead, 42 days
18.5
TCGA-CJ-4899-01A
0 years, male, asian, stage:Stage I, alive, 1528 days
18.4
TCGA-BP-4770-01A
0 years, female, white, stage:Stage IV, dead, 329 days
17.6
TCGA-CJ-4876-01A
0 years, male, white, stage:Stage II, alive, 1955 days
17.5
TCGA-B2-5635-01A
0 years, male, white, stage:Stage I, alive, 755 days
17.3
TCGA-A3-3351-01A
0 years, male, white, stage:Stage II, alive, 910 days
17.3
TCGA-B0-4824-01A
0 years, female, white, stage:Stage I, dead, 1657 days
17.2
TCGA-CZ-4866-01A
0 years, female, white, stage:Stage I, alive, 3267 days
17.2
TCGA-B0-5710-01A
0 years, male, white, stage:Stage I, alive, 2430 days
17.0
TCGA-AK-3453-01A
0 years, female, white, stage:Stage II, alive, 2531 days
17.0
TCGA-B0-5095-01A
0 years, male, white, stage:Stage III, dead, 245 days
17.0
TCGA-B4-5835-01A
0 years, female, white, stage:Stage I, alive, 16 days
16.9
TCGA-CZ-5470-01A
0 years, female, stage:Stage II, alive, 386 days
16.9
TCGA-BP-5196-01A
0 years, male, white, stage:Stage I, alive, 1018 days
16.8
TCGA-B0-5098-01A
0 years, female, black or african american, stage:Stage I, dead, 1584 days
16.8
TCGA-CJ-6033-01A
0 years, female, white, stage:Stage IV, dead, 224 days
16.7
TCGA-CZ-5464-01A
0 years, male, white, stage:Stage IV, alive, 2128 days
16.5
TCGA-CJ-4902-01A
0 years, male, white, stage:Stage III, alive, 1520 days
16.4
TCGA-A3-3308-01A
0 years, female, white, stage:Stage III, alive, 16 days
16.4
TCGA-CW-5591-01A
0 years, male, white, stage:Stage IV, alive, 2271 days
16.4
TCGA-B8-A7U6-01A
0 years, female, black or african american, stage:Stage I, alive, 495 days
16.3
TCGA-B2-4102-01A
0 years, male, white, stage:Stage I, alive, 952 days
16.3
TCGA-AK-3450-01A
0 years, female, white, stage:Stage I, alive, 1508 days
16.1
TCGA-B0-5107-01A
0 years, female, white, stage:Stage IV, dead, 927 days
16.1
TCGA-B4-5836-01A
0 years, female, white, stage:Stage I, alive, 141 days
16.0
TCGA-B0-4844-01A
0 years, male, white, stage:Stage IV, dead, 313 days
15.9
TCGA-BP-4165-01A
0 years, female, white, stage:Stage I, alive, 3037 days
15.9
TCGA-G6-A8L7-01A
0 years, female, black or african american, stage:Stage I, alive, 2133 days
15.6
TCGA-AK-3461-01A
0 years, male, white, stage:Stage I, alive, 2217 days
15.6
TCGA-CJ-4634-01A
0 years, female, white, stage:Stage I, alive, 3498 days
15.5
TCGA-BP-4340-01A
0 years, female, white, stage:Stage I, dead, 562 days
15.4
TCGA-BP-4355-01A
0 years, female, white, stage:Stage III, dead, 953 days
15.4
TCGA-A3-3320-01A
0 years, female, white, stage:Stage I, alive, 1508 days
15.4
TCGA-B0-4845-01A
0 years, male, white, stage:Stage IV, dead, 1986 days
15.3
TCGA-BP-4161-01A
0 years, male, white, stage:Stage I, alive, 2746 days
15.3
TCGA-B2-3923-01A
0 years, male, white, stage:Stage II, alive, 992 days
15.2
TCGA-MM-A563-01A
0 years, male, black or african american, stage:'--, alive, 591 days
15.2
TCGA-T7-A92I-01A
0 years, female, black or african american, stage:Stage I, alive, 356 days
15.2
TCGA-CJ-5686-01A
0 years, female, white, stage:Stage I, alive, 2038 days
15.2
TCGA-CJ-4639-01A
0 years, female, white, stage:Stage II, alive, 3229 days
15.1
TCGA-BP-4164-01A
0 years, female, white, stage:Stage III, dead, 992 days
15.1
TCGA-BP-4985-01A
0 years, male, white, stage:Stage III, dead, 952 days
15.1
TCGA-A3-A8OW-01A
0 years, male, black or african american, stage:Stage III, alive, 323 days
15.1
TCGA-B4-5843-01A
0 years, male, white, stage:Stage I, alive, 11 days
15.1
TCGA-6D-AA2E-01A
0 years, female, black or african american, stage:Stage I, alive, 362 days
15.0
TCGA-B0-4849-01A
0 years, male, white, stage:Stage III, dead, 69 days
15.0
TCGA-CJ-4643-01A
0 years, female, white, stage:Stage II, alive, 1793 days
15.0
TCGA-CJ-4641-01A
0 years, female, white, stage:Stage IV, dead, 1661 days
15.0
TCGA-CZ-4862-01A
0 years, male, white, stage:Stage I, alive, 3271 days
15.0
TCGA-A3-3346-01A
0 years, male, white, stage:Stage I, dead, 137 days
15.0
TCGA-B0-5712-01A
0 years, female, black or african american, stage:Stage IV, alive, 2722 days
15.0
TCGA-B4-5838-01A
0 years, male, white, stage:'--, alive, 166 days
14.9
TCGA-BP-5190-01A
0 years, male, white, stage:Stage I, alive, 1011 days
14.9
TCGA-CZ-5455-01A
0 years, male, white, stage:Stage IV, dead, 561 days
14.9
TCGA-B0-4713-01A
0 years, female, white, stage:Stage III, dead, 202 days
14.8
TCGA-CJ-6032-01A
0 years, female, white, stage:Stage II, alive, 3639 days
14.8
TCGA-A3-3362-01A
0 years, female, white, stage:Stage I, alive, 1559 days
14.8
TCGA-B0-4828-01A
0 years, male, white, stage:Stage IV, dead, 307 days
14.7
TCGA-BP-5201-01A
0 years, male, white, stage:Stage IV, alive, 951 days
14.7
TCGA-G6-A8L8-01A
0 years, female, black or african american, stage:Stage I, dead, 1091 days
14.6
TCGA-B2-5633-01A
0 years, male, white, stage:Stage I, alive, 963 days
14.6
TCGA-A3-3349-01A
0 years, female, white, stage:Stage I, alive, 1385 days
14.6
TCGA-A3-3378-01A
0 years, male, white, stage:Stage I, alive, 630 days
14.5
TCGA-BP-4173-01A
0 years, male, white, stage:Stage II, alive, 1893 days
14.5
TCGA-B0-5110-01A
0 years, female, white, stage:Stage I, alive, 2009 days
14.4
TCGA-BP-4345-01A
0 years, male, white, stage:Stage III, alive, 1516 days
14.4
TCGA-BP-4968-01A
0 years, male, white, stage:Stage I, alive, 1746 days
14.4
TCGA-CJ-5680-01A
0 years, female, white, stage:Stage IV, dead, 768 days
14.4
TCGA-B0-4810-01A
0 years, male, white, stage:Stage III, dead, 478 days
14.4
TCGA-AK-3445-01A
0 years, male, white, stage:Stage III, alive, 2392 days
14.3
TCGA-A3-3328-01A
0 years, male, white, stage:Stage I, alive, 1385 days
14.3
TCGA-CJ-5681-01A
0 years, female, white, stage:Stage IV, dead, 552 days
14.2
TCGA-B0-5102-01A
0 years, female, white, stage:Stage I, dead, 2764 days
14.2
TCGA-BP-5199-01A
0 years, male, white, stage:Stage II, alive, 1355 days
14.2
TCGA-CJ-4638-01A
0 years, female, white, stage:Stage IV, dead, 431 days
14.1
TCGA-BP-4349-01A
0 years, female, white, stage:Stage I, alive, 372 days
14.1
TCGA-B0-5106-01A
0 years, male, white, stage:Stage I, dead, 1598 days
14.0
TCGA-B0-4833-01A
0 years, female, white, stage:Stage I, dead, 2386 days
14.0
TCGA-BP-5174-01A
0 years, female, white, stage:Stage I, alive, 2257 days
14.0
TCGA-B0-4703-01A
0 years, male, white, stage:Stage IV, dead, 182 days
14.0
TCGA-B8-A54D-01A
0 years, male, black or african american, stage:Stage III, alive, 830 days
14.0
TCGA-A3-3359-01A
0 years, female, white, stage:Stage I, alive, 2504 days
13.9
TCGA-BP-4346-01A
0 years, male, white, stage:Stage III, dead, 1493 days
13.9
TCGA-AK-3440-01A
0 years, male, white, stage:Stage I, alive, 2865 days
13.9
TCGA-CZ-5462-01A
0 years, male, white, stage:Stage IV, dead, 311 days
13.9
TCGA-A3-3317-01A
0 years, male, stage:Stage II, alive, 1491 days
13.9
TCGA-CJ-4635-01A
0 years, male, white, stage:Stage I, alive, 1416 days
13.8
TCGA-B4-5844-01A
0 years, female, white, stage:Stage II, alive, 7 days
13.8
TCGA-BP-4769-01A
0 years, male, white, stage:Stage I, alive, 1876 days
13.8
TCGA-B0-5399-01A
0 years, male, white, stage:Stage I, alive, 1411 days
13.7
TCGA-B8-A54G-01A
0 years, male, black or african american, stage:Stage I, alive, 53 days
13.7
TCGA-A3-3347-01A
0 years, female, white, stage:Stage III, dead, 1610 days
13.7
TCGA-EU-5906-01A
0 years, male, white, stage:Stage I, alive, 206 days
13.7
TCGA-B0-4712-01A
0 years, male, white, stage:Stage IV, dead, 1337 days
13.7
TCGA-CJ-4640-01A
0 years, male, white, stage:Stage III, alive, 3480 days
13.6
TCGA-BP-4977-01A
0 years, male, white, stage:Stage I, alive, 454 days
13.6
TCGA-B0-5113-01A
0 years, female, white, stage:Stage III, alive, 1175 days
13.6
TCGA-BP-4331-01A
0 years, male, white, stage:Stage I, dead, 2454 days
13.5
TCGA-CW-5583-01A
0 years, female, white, stage:Stage I, alive, 2489 days
13.5
TCGA-B8-A54J-01A
0 years, male, black or african american, stage:Stage II, alive, 528 days
13.5
TCGA-B0-5690-01A
0 years, female, white, stage:Stage I, alive, 3392 days
13.5
TCGA-A3-A6NI-01A
0 years, male, black or african american, stage:Stage I, alive, 1018 days
13.5
TCGA-BP-4354-01A
0 years, male, white, stage:Stage IV, dead, 1034 days
13.4
TCGA-DV-5568-01A
0 years, male, white, stage:Stage I, alive, 370 days
13.4
TCGA-BP-4163-01A
0 years, female, white, stage:Stage III, alive, 2839 days
13.4
TCGA-CZ-4863-01A
0 years, female, white, stage:Stage III, alive, 1928 days
13.4
TCGA-B0-4846-01A
0 years, male, white, stage:Stage IV, dead, 1200 days
13.4
TCGA-B0-5705-01A
0 years, female, white, stage:Stage I, alive, 4537 days
13.3
TCGA-B0-4693-01A
0 years, female, white, stage:Stage III, dead, 77 days
13.3
TCGA-BP-4169-01A
0 years, female, white, stage:Stage II, dead, 701 days
13.3
TCGA-B8-5545-01A
0 years, male, black or african american, stage:Stage I, alive, 1525 days
13.3
TCGA-B2-A4SR-01A
0 years, male, black or african american, stage:Stage II, alive, 507 days
13.3
TCGA-CJ-5683-01A
0 years, male, white, stage:Stage I, alive, 1889 days
13.3
TCGA-CJ-4881-01A
0 years, male, white, stage:Stage III, alive, 2014 days
13.3
TCGA-CJ-4907-01A
0 years, male, white, stage:Stage III, alive, 1499 days
13.3
TCGA-A3-3372-01A
0 years, male, white, stage:Stage III, alive, 735 days
13.2
TCGA-B0-5713-01A
0 years, female, white, stage:Stage III, alive, 2782 days
13.2
TCGA-BP-4342-01A
0 years, male, white, stage:Stage II, dead, 2256 days
13.2
TCGA-B0-4843-01A
0 years, male, white, stage:Stage III, dead, 320 days
13.2
TCGA-B0-5692-01A
0 years, female, white, stage:Stage III, alive, 3944 days
13.2
TCGA-B8-A54E-01A
0 years, female, black or african american, stage:Stage I, alive, 909 days
13.2
TCGA-BP-4162-01A
0 years, female, white, stage:Stage I, alive, 3074 days
13.2
TCGA-BP-4775-01A
0 years, female, white, stage:Stage I, alive, 1843 days
13.1
TCGA-B0-5711-01A
0 years, male, white, stage:Stage III, alive, 3989 days
13.1
TCGA-CW-5584-01A
0 years, male, white, stage:Stage III, dead, 164 days
13.1
TCGA-BP-4325-01A
0 years, female, white, stage:Stage I, alive, 2964 days
13.1
TCGA-CJ-5676-01A
0 years, male, white, stage:Stage III, alive, 4067 days
13.1
TCGA-CZ-5986-01A
0 years, male, white, stage:Stage I, alive, 373 days
13.1
TCGA-B0-4691-01A
0 years, male, white, stage:Stage IV, dead, 139 days
13.1
TCGA-A3-3376-01A
0 years, male, black or african american, stage:Stage I, dead, 1696 days
13.1
TCGA-CJ-4908-01A
0 years, male, white, stage:Stage I, alive, 1531 days
13.1
TCGA-BP-4347-01A
0 years, male, white, stage:Stage III, alive, 1367 days
13.1
TCGA-B0-4706-01A
0 years, male, white, stage:Stage III, dead, 65 days
13.0
TCGA-B0-4817-01A
0 years, male, white, stage:Stage III, dead, 1019 days
13.0
TCGA-CJ-4893-01A
0 years, female, white, stage:Stage I, alive, 750 days
13.0
TCGA-B0-5697-01A
0 years, male, white, stage:Stage I, alive, 2630 days
13.0
TCGA-B2-4101-01A
0 years, male, white, stage:Stage II, alive, 648 days
13.0
TCGA-B0-5812-01A
0 years, male, white, stage:Stage I, alive, 3834 days
13.0
TCGA-B0-5119-01A
0 years, female, white, stage:Stage I, alive, 1552 days
12.9
TCGA-BP-4967-01A
0 years, male, white, stage:Stage III, alive, 205 days
12.9
TCGA-CJ-4637-01A
0 years, female, white, stage:Stage IV, dead, 2227 days
12.9
TCGA-CJ-4884-01A
0 years, female, white, stage:Stage III, alive, 1759 days
12.9
TCGA-CW-6088-01A
0 years, male, white, stage:Stage I, alive, 3222 days
12.9
TCGA-A3-3382-01A
0 years, male, white, stage:Stage I, alive, 574 days
12.8
TCGA-B0-5088-01A
0 years, male, white, stage:Stage I, dead, 563 days
12.8
TCGA-CW-5580-01A
0 years, female, white, stage:Stage IV, dead, 1964 days
12.8
TCGA-A3-A6NL-01A
0 years, female, black or african american, stage:Stage I, alive, 689 days
12.7
TCGA-BP-4332-01A
0 years, male, white, stage:Stage III, alive, 1133 days
12.6
TCGA-BP-5175-01A
0 years, male, white, stage:Stage I, alive, 932 days
12.6
TCGA-BP-4784-01A
0 years, female, white, stage:Stage I, alive, 1854 days
12.6
TCGA-BP-4341-01A
0 years, male, white, stage:Stage III, dead, 1589 days
12.6
TCGA-CJ-5677-01A
0 years, female, white, stage:Stage IV, dead, 782 days
12.6
TCGA-AK-3431-01A
0 years, female, white, stage:Stage II, dead, 2241 days
12.6
TCGA-EU-5905-01A
0 years, female, white, stage:Stage I, alive, 119 days
12.6
TCGA-B0-5693-01A
0 years, female, white, stage:Stage I, alive, 4074 days
12.6
TCGA-B0-5707-01A
0 years, female, white, stage:Stage I, alive, 3744 days
12.6
TCGA-CJ-5675-01A
0 years, male, white, stage:Stage II, alive, 3936 days
12.5
TCGA-B0-4701-01A
0 years, female, white, stage:Stage IV, dead, 238 days
12.5
TCGA-BP-5183-01A
0 years, male, white, stage:Stage III, alive, 1291 days
12.5
TCGA-CJ-4892-01A
0 years, female, white, stage:Stage I, alive, 1521 days
12.5
TCGA-B4-5378-01A
0 years, male, white, stage:Stage I, alive, 175 days
12.5
TCGA-B0-4813-01A
0 years, male, white, stage:Stage III, dead, 18 days
12.5
TCGA-CZ-5984-01A
0 years, male, white, stage:Stage I, alive, 2067 days
12.4
TCGA-BP-4960-01A
0 years, male, white, stage:Stage II, alive, 2172 days
12.4
TCGA-B0-5100-01A
0 years, male, black or african american, stage:Stage III, dead, 1913 days
12.4
TCGA-B8-4148-01A
0 years, female, white, stage:Stage I, alive, 1520 days
12.4
TCGA-BP-5184-01A
0 years, male, white, stage:Stage I, alive, 1133 days
12.4
TCGA-BP-4335-01A
0 years, female, white, stage:Stage IV, dead, 475 days
12.4
TCGA-CZ-5452-01A
0 years, male, white, stage:Stage II, alive, 1789 days
12.4
TCGA-A3-3323-01A
0 years, male, white, stage:Stage I, alive, 1106 days
12.4
TCGA-B0-5694-01A
0 years, male, white, stage:Stage III, dead, 480 days
12.4
TCGA-BP-4998-01A
0 years, male, asian, stage:Stage I, alive, 932 days
12.4
TCGA-B0-4852-01A
0 years, female, white, stage:Stage II, dead, 1121 days
12.4
TCGA-BP-4982-01A
0 years, male, white, stage:Stage I, alive, 1014 days
12.3
TCGA-CZ-5985-01A
0 years, male, white, stage:Stage II, alive, 1997 days
12.3
TCGA-B8-A54H-01A
0 years, female, black or african american, stage:Stage II, alive, 256 days
12.3
TCGA-B0-4837-01A
0 years, male, white, stage:Stage I, dead, 1378 days
12.3
TCGA-CJ-4868-01A
0 years, male, white, stage:Stage IV, dead, 646 days
12.3
TCGA-B4-5834-01A
0 years, male, white, stage:Stage I, alive, 38 days
12.3
TCGA-BP-4994-01A
0 years, male, white, stage:Stage I, alive, 1308 days
12.3
TCGA-B8-4622-01A
0 years, male, white, stage:Stage IV, alive, 1525 days
12.3
TCGA-G6-A8L6-01A
0 years, male, black or african american, stage:Stage IV, dead, 313 days
12.3
TCGA-BP-5001-01A
0 years, female, white, stage:Stage I, alive, 1177 days
12.3
TCGA-B0-4816-01A
0 years, male, white, stage:Stage II, dead, 1371 days
12.3
TCGA-DV-5573-01A
0 years, male, white, stage:Stage I, alive, 1130 days
12.3
TCGA-B0-4690-01A
0 years, male, white, stage:Stage IV, dead, 43 days
12.2
TCGA-DV-A4VX-01A
0 years, male, black or african american, stage:Stage IV, dead, 1626 days
12.2
TCGA-CZ-5468-01A
0 years, male, white, stage:Stage IV, dead, 59 days
12.2
TCGA-B0-5094-01A
0 years, male, white, stage:Stage IV, dead, 333 days
12.2
TCGA-BP-4756-01A
0 years, female, asian, stage:Stage I, alive, 374 days
12.2
TCGA-B8-5546-01A
0 years, female, black or african american, stage:Stage I, alive, 505 days
12.2
TCGA-BP-5007-01A
0 years, male, white, stage:Stage II, alive, 1140 days
12.2
TCGA-B0-5699-01A
0 years, male, white, stage:Stage I, alive, 3841 days
12.2
TCGA-BP-4804-01A
0 years, male, white, stage:Stage I, alive, 1459 days
12.2
TCGA-CJ-6028-01A
0 years, male, white, stage:Stage IV, dead, 1625 days
12.2
TCGA-B8-5158-01A
0 years, male, white, stage:Stage III, alive, 1218 days
12.2
TCGA-BP-5176-01A
0 years, female, white, stage:Stage I, dead, 1590 days
12.2
TCGA-CW-6087-01A
0 years, male, white, stage:Stage IV, dead, 41 days
12.1
TCGA-BP-4774-01A
0 years, female, white, stage:Stage I, alive, 1885 days
12.1
TCGA-B0-5120-01A
0 years, female, white, stage:Stage I, alive, 1169 days
12.1
TCGA-BP-4782-01A
0 years, female, white, stage:Stage I, alive, 354 days
12.1
TCGA-AK-3455-01A
0 years, female, white, stage:Stage III, dead, 683 days
12.1
TCGA-AK-3454-01A
0 years, male, white, stage:Stage I, alive, 874 days
12.1
TCGA-B8-A54K-01A
0 years, male, black or african american, stage:Stage I, alive, 469 days
12.1
TCGA-B2-5636-01A
0 years, male, white, stage:Stage I, alive, 919 days
12.0
TCGA-BP-4790-01A
0 years, male, white, stage:Stage I, dead, 1111 days
12.0
TCGA-BP-4974-01A
0 years, male, white, stage:Stage IV, dead, 211 days
12.0
TCGA-CZ-5982-01A
0 years, female, white, stage:Stage I, alive, 2439 days
12.0
TCGA-BP-4326-01A
0 years, female, white, stage:Stage I, dead, 1625 days
12.0
TCGA-CZ-4859-01A
0 years, female, white, stage:Stage I, alive, 1787 days
11.9
TCGA-BP-5186-01A
0 years, female, white, stage:Stage I, alive, 693 days
11.9
TCGA-CJ-4895-01A
0 years, male, white, stage:Stage IV, dead, 1200 days
11.9
TCGA-B0-5400-01A
0 years, female, white, stage:Stage III, alive, 1733 days
11.9
TCGA-B0-4814-01A
0 years, male, white, stage:Stage IV, dead, 168 days
11.9
TCGA-B0-4710-01A
0 years, female, white, stage:Stage III, alive, 1755 days
11.9
TCGA-B0-5108-01A
0 years, male, white, stage:Stage III, alive, 1782 days
11.9
TCGA-CJ-6030-01A
0 years, male, white, stage:Stage I, dead, 2299 days
11.9
TCGA-CJ-4894-01A
0 years, male, white, stage:Stage III, dead, 841 days
11.9
TCGA-EU-5904-01A
0 years, female, white, stage:Stage I, alive, 551 days
11.9
TCGA-A3-3383-01A
0 years, male, white, stage:Stage I, alive, 861 days
11.8
TCGA-CW-5590-01A
0 years, male, white, stage:Stage IV, dead, 1075 days
11.8
TCGA-A3-3352-01A
0 years, male, white, stage:Stage III, dead, 561 days
11.8
TCGA-B8-4143-01A
0 years, female, white, stage:Stage IV, dead, 709 days
11.8
TCGA-BP-4995-01A
0 years, male, white, stage:Stage I, alive, 1371 days
11.8
TCGA-A3-3365-01A
0 years, male, white, stage:Stage I, alive, 873 days
11.8
TCGA-A3-3319-01A
0 years, male, white, stage:Stage I, alive, 1130 days
11.8
TCGA-CJ-4871-01A
0 years, male, white, stage:Stage IV, alive, 2423 days
11.8
TCGA-A3-3380-01A
0 years, male, stage:Stage I, alive, 567 days
11.8
TCGA-B4-5377-01A
0 years, female, white, stage:Stage IV, alive, 365 days
11.7
TCGA-A3-A8OV-01A
0 years, male, black or african american, stage:Stage I, alive, 340 days
11.7
TCGA-BP-4352-01A
0 years, female, white, stage:Stage IV, dead, 344 days
11.7
TCGA-CW-5585-01A
0 years, male, white, stage:Stage IV, alive, 2609 days
11.7
TCGA-A3-3370-01A
0 years, female, white, stage:Stage I, alive, 2274 days
11.7
TCGA-A3-3387-01A
0 years, male, white, stage:Stage I, alive, 617 days
11.7
TCGA-CJ-4878-01A
0 years, female, white, stage:Stage III, alive, 2186 days
11.7
TCGA-BP-4989-01A
0 years, male, white, stage:Stage III, alive, 118 days
11.7
TCGA-AS-3778-01A
0 years, male, white, stage:Stage I, alive, 43 days
11.7
TCGA-DV-5576-01A
0 years, female, black or african american, stage:Stage I, dead, 727 days
11.7
TCGA-GK-A6C7-01A
0 years, female, black or african american, stage:Stage I, alive, 61 days
11.7
TCGA-CZ-5987-01A
0 years, male, white, stage:Stage IV, dead, 445 days
11.7
TCGA-MM-A84U-01A
0 years, female, black or african american, stage:Stage I, alive, 700 days
11.6
TCGA-CJ-4636-01A
0 years, male, white, stage:Stage III, alive, 1924 days
11.6
TCGA-AK-3465-01A
0 years, female, black or african american, stage:Stage I, alive, 369 days
11.6
TCGA-B8-5164-01A
0 years, male, white, stage:Stage III, alive, 26 days
11.6
TCGA-CW-6090-01A
0 years, male, white, stage:Stage I, alive, 2552 days
11.5
TCGA-B0-4822-01A
0 years, male, white, stage:Stage II, dead, 1111 days
11.5
TCGA-CZ-4864-01A
0 years, male, white, stage:Stage II, dead, 1315 days
11.5
TCGA-CW-5581-01A
0 years, male, white, stage:Stage I, alive, 2799 days
11.5
TCGA-B0-5696-01A
0 years, male, white, stage:Stage III, alive, 2609 days
11.5
TCGA-B0-5080-01A
0 years, male, white, stage:Stage IV, dead, 342 days
11.5
TCGA-A3-A8CQ-01A
0 years, female, black or african american, stage:Stage I, alive, 3 days
11.5
TCGA-B0-5701-01A
0 years, male, white, stage:Stage III, alive, 2461 days
11.5
TCGA-BP-4961-01A
0 years, male, white, stage:Stage I, alive, 1935 days
11.5
TCGA-BP-4965-01A
0 years, male, white, stage:Stage I, alive, 1871 days
11.5
TCGA-BP-4795-01A
0 years, female, white, stage:Stage I, alive, 620 days
11.5
TCGA-CJ-4916-01A
0 years, female, white, stage:Stage III, alive, 1373 days
11.4
TCGA-DV-5566-01A
0 years, female, white, stage:Stage I, alive, 1398 days
11.4
TCGA-B2-5641-01A
0 years, male, white, stage:Stage I, alive, 656 days
11.4
TCGA-B0-5691-01A
0 years, female, white, stage:Stage I, alive, 3431 days
11.4
TCGA-A3-A6NJ-01A
0 years, female, black or african american, stage:Stage I, alive, 468 days
11.4
TCGA-BP-5189-01A
0 years, male, white, stage:Stage I, dead, 822 days
11.3
TCGA-CW-5587-01A
0 years, female, white, stage:Stage III, alive, 2226 days
11.3
TCGA-B0-4718-01A
0 years, male, white, stage:Stage III, alive, 1778 days
11.3
TCGA-CJ-5682-01A
0 years, male, white, stage:Stage IV, alive, 3736 days
11.3
TCGA-CZ-5469-01A
0 years, male, white, stage:Stage II, dead, 946 days
11.3
TCGA-A3-3326-01A
0 years, male, white, stage:Stage I, alive, 1137 days
11.3
TCGA-B0-5097-01A
0 years, female, white, stage:Stage III, alive, 665 days
11.2
TCGA-CJ-4875-01A
0 years, male, white, stage:Stage IV, dead, 3554 days
11.2
TCGA-BP-4991-01A
0 years, male, white, stage:Stage I, alive, 1413 days
11.2
TCGA-B8-5159-01A
0 years, female, white, stage:Stage I, alive, 722 days
11.2
TCGA-CZ-5465-01A
0 years, female, stage:Stage III, dead, 2564 days
11.2
TCGA-CJ-4872-01A
0 years, male, white, stage:Stage I, alive, 1435 days
11.1
TCGA-A3-3363-01A
0 years, male, asian, stage:Stage II, alive, 319 days
11.1
TCGA-B0-4819-01A
0 years, female, white, stage:Stage IV, dead, 183 days
11.1
TCGA-BP-4973-01A
0 years, male, white, stage:Stage III, alive, 1384 days
11.1
TCGA-BP-4766-01A
0 years, female, white, stage:Stage I, alive, 1462 days
11.1
TCGA-BP-4177-01A
0 years, male, white, stage:Stage I, alive, 1670 days
11.1
TCGA-AK-3456-01A
0 years, male, black or african american, stage:Stage II, alive, 1143 days
11.1
TCGA-B0-5695-01A
0 years, female, white, stage:Stage I, alive, 2150 days
11.1
TCGA-DV-A4W0-01A
0 years, male, black or african american, stage:Stage I, alive, 2470 days
11.1
TCGA-A3-3316-01A
0 years, male, white, stage:Stage II, alive, 1493 days
11.1
TCGA-A3-3325-01A
0 years, male, white, stage:Stage I, dead, 1170 days
11.0
TCGA-BP-4768-01A
0 years, female, white, stage:Stage I, alive, 400 days
11.0
TCGA-CJ-4886-01A
0 years, female, white, stage:Stage I, alive, 1952 days
11.0
TCGA-BP-4801-01A
0 years, male, white, stage:Stage I, alive, 1124 days
11.0
TCGA-BP-5195-01A
0 years, male, white, stage:Stage I, alive, 749 days
11.0
TCGA-B2-5639-01A
0 years, male, white, stage:Stage IV, dead, 1003 days
11.0
TCGA-B0-4838-01A
0 years, female, white, stage:Stage I, dead, 834 days
11.0
TCGA-B0-4847-01A
0 years, male, white, stage:Stage IV, dead, 793 days
10.9
TCGA-B0-4714-01A
0 years, male, white, stage:Stage IV, dead, 99 days
10.9
TCGA-CJ-4903-01A
0 years, male, white, stage:Stage I, alive, 1560 days
10.9
TCGA-BP-4344-01A
0 years, female, white, stage:Stage I, alive, 1666 days
10.9
TCGA-BP-5181-01A
0 years, female, white, stage:Stage I, alive, 1495 days
10.9
TCGA-BP-5177-01A
0 years, female, white, stage:Stage I, alive, 293 days
10.9
TCGA-BP-4166-01A
0 years, male, white, stage:Stage III, alive, 13 days
10.8
TCGA-A3-3367-01A
0 years, male, white, stage:Stage I, alive, 2270 days
10.8
TCGA-CJ-5678-01A
0 years, male, black or african american, stage:Stage IV, dead, 574 days
10.8
TCGA-B8-A8YJ-01A
0 years, female, black or african american, stage:Stage I, alive, 431 days
10.8
TCGA-BP-4353-01A
0 years, male, white, stage:Stage I, dead, 375 days
10.8
TCGA-CJ-4873-01A
0 years, female, white, stage:Stage III, alive, 1776 days
10.8
TCGA-BP-4789-01A
0 years, male, white, stage:Stage I, alive, 1489 days
10.8
TCGA-BP-5187-01A
0 years, male, white, stage:Stage I, alive, 406 days
10.8
TCGA-BP-4327-01A
0 years, female, white, stage:Stage II, dead, 109 days
10.7
TCGA-CJ-4905-01A
0 years, female, white, stage:Stage I, alive, 1496 days
10.7
TCGA-AK-3433-01A
0 years, female, white, stage:Stage II, alive, 3409 days
10.7
TCGA-B0-4818-01A
0 years, female, white, stage:Stage II, dead, 510 days
10.7
TCGA-CJ-4869-01A
0 years, male, white, stage:Stage III, alive, 2554 days
10.7
TCGA-BP-4160-01A
0 years, male, white, stage:Stage III, alive, 2881 days
10.7
TCGA-B0-4848-01A
0 years, male, white, stage:Stage III, dead, 883 days
10.7
TCGA-CJ-4901-01A
0 years, male, white, stage:Stage III, alive, 1450 days
10.7
TCGA-MW-A4EC-01A
0 years, female, black or african american, stage:Stage I, alive, 498 days
10.7
TCGA-BP-4771-01A
0 years, male, white, stage:Stage IV, dead, 162 days
10.7
TCGA-CW-5589-01A
0 years, male, white, stage:Stage I, alive, 2378 days
10.7
TCGA-AK-3434-01A
0 years, male, white, stage:Stage I, alive, 2087 days
10.7
TCGA-CZ-5451-01A
0 years, male, white, stage:Stage II, alive, 1929 days
10.7
TCGA-B8-4620-01A
0 years, female, white, stage:Stage III, alive, 777 days
10.7
TCGA-CZ-4858-01A
0 years, male, white, stage:Stage II, dead, 2105 days
10.6
TCGA-BP-5170-01A
0 years, male, white, stage:Stage I, alive, 2412 days
10.6
TCGA-BP-5194-01A
0 years, male, white, stage:Stage I, alive, 408 days
10.6
TCGA-CJ-4874-01A
0 years, female, white, stage:Stage I, alive, 2283 days
10.6
TCGA-CJ-5672-01A
0 years, male, white, stage:Stage I, dead, 1972 days
10.6
TCGA-B4-5832-01A
0 years, male, white, stage:Stage III, alive, 155 days
10.6
TCGA-CJ-6027-01A
0 years, male, white, stage:Stage I, dead, 3615 days
10.6
TCGA-BP-4765-01A
0 years, male, white, stage:Stage I, alive, 2184 days
10.5
TCGA-B0-5077-01A
0 years, male, white, stage:Stage I, dead, 1317 days
10.5
TCGA-B0-5117-01A
0 years, male, white, stage:Stage I, alive, 1608 days
10.5
TCGA-B0-4700-01A
0 years, male, white, stage:Stage IV, dead, 1980 days
10.5
TCGA-B8-4621-01A
0 years, male, black or african american, stage:Stage I, alive, 788 days
10.5
TCGA-BP-4330-01A
0 years, female, black or african american, stage:Stage III, alive, 1888 days
10.5
TCGA-CZ-5456-01A
0 years, male, white, stage:Stage II, alive, 2422 days
10.5
TCGA-BP-5010-01A
0 years, male, white, stage:Stage III, dead, 878 days
10.5
TCGA-A3-3329-01A
0 years, male, white, stage:Stage I, alive, 1624 days
10.5
TCGA-BP-4174-01A
0 years, male, white, stage:Stage II, alive, 1879 days
10.5
TCGA-BP-4986-01A
0 years, male, white, stage:Stage I, alive, 785 days
10.5
TCGA-BP-4976-01A
0 years, male, white, stage:Stage I, alive, 1632 days
10.5
TCGA-B0-5698-01A
0 years, male, black or african american, stage:Stage I, alive, 3631 days
10.4
TCGA-B0-4836-01A
0 years, male, white, stage:Stage IV, dead, 1238 days
10.4
TCGA-CJ-6031-01A
0 years, male, white, stage:Stage I, alive, 1906 days
10.4
TCGA-CZ-5467-01A
0 years, female, white, stage:Stage III, dead, 73 days
10.4
TCGA-CJ-4887-01A
0 years, male, white, stage:Stage IV, dead, 932 days
10.4
TCGA-B0-5116-01A
0 years, male, white, stage:Stage III, alive, 1274 days
10.4
TCGA-A3-3373-01A
0 years, female, white, stage:Stage I, alive, 1621 days
10.4
TCGA-CZ-5463-01A
0 years, male, white, stage:Stage II, alive, 662 days
10.4
TCGA-BP-5191-01A
0 years, male, white, stage:Stage III, alive, 967 days
10.4
TCGA-G6-A5PC-01A
0 years, female, black or african american, stage:Stage IV, dead, 242 days
10.3
TCGA-CJ-4920-01A
0 years, female, white, stage:Stage I, dead, 139 days
10.3
TCGA-BP-4970-01A
0 years, male, asian, stage:Stage III, alive, 433 days
10.2
TCGA-AK-3443-01A
0 years, male, white, stage:Stage II, alive, 1423 days
10.2
TCGA-CZ-4853-01A
0 years, male, white, stage:Stage I, alive, 774 days
10.2
TCGA-B0-5709-01A
0 years, female, white, stage:Stage III, alive, 3974 days
10.2
TCGA-B8-5165-01A
0 years, male, white, stage:Stage I, alive, 737 days
10.2
TCGA-BP-4983-01A
0 years, female, asian, stage:Stage III, alive, 1413 days
10.2
TCGA-CJ-5684-01A
0 years, male, white, stage:Stage III, alive, 2231 days
10.2
TCGA-AK-3429-01A
0 years, female, white, stage:Stage II, alive, 3328 days
10.2
TCGA-BP-5192-01A
0 years, male, white, stage:Stage I, alive, 714 days
10.2
TCGA-CJ-4897-01A
0 years, female, white, stage:Stage III, alive, 3341 days
10.2
TCGA-A3-3331-01A
0 years, female, white, stage:Stage I, alive, 1257 days
10.1
TCGA-CJ-4904-01A
0 years, female, white, stage:Stage IV, alive, 3302 days
10.1
TCGA-A3-3307-01A
0 years, male, stage:Stage III, alive, 1436 days
10.1
TCGA-B0-5096-01A
0 years, female, white, stage:Stage III, dead, 68 days
10.1
TCGA-BP-5202-01A
0 years, male, white, stage:Stage III, alive, 29 days
10.1
TCGA-B8-5550-01A
0 years, male, white, stage:Stage III, alive, 1476 days
10.1
TCGA-BP-4159-01A
0 years, male, white, stage:Stage I, dead, 2601 days
10.1
TCGA-BP-4760-01A
0 years, male, black or african american, stage:Stage I, alive, 2361 days
10.1
TCGA-BP-4972-01A
0 years, female, white, stage:Stage III, alive, 1502 days
10.0
TCGA-CZ-4854-01A
0 years, male, white, stage:Stage I, dead, 1404 days
10.0
TCGA-BP-5168-01A
0 years, male, white, stage:Stage I, dead, 1463 days
10.0
TCGA-B0-5084-01A
0 years, male, white, stage:Stage IV, dead, 222 days
10.0
TCGA-B0-4827-01A
0 years, female, white, stage:Stage III, dead, 885 days
10.0
TCGA-BP-4999-01A
0 years, male, white, stage:Stage I, alive, 1266 days
10.0
TCGA-CZ-5460-01A
0 years, male, white, stage:Stage IV, alive, 2873 days
10.0
TCGA-B0-4842-01A
0 years, female, white, stage:Stage III, dead, 1724 days
10.0
TCGA-CZ-5988-01A
0 years, male, white, stage:Stage I, alive, 693 days
10.0
TCGA-B0-5075-01A
0 years, female, white, stage:Stage III, dead, 637 days
9.9
TCGA-CZ-5454-01A
0 years, male, white, stage:Stage IV, dead, 722 days
9.9
TCGA-BP-4798-01A
0 years, male, white, stage:'--, dead, 334 days
9.9
TCGA-BP-4763-01A
0 years, female, white, stage:Stage I, dead, 1270 days
9.9
TCGA-B0-5402-01A
0 years, male, white, stage:Stage IV, alive, 1290 days
9.8
TCGA-BP-4971-01A
0 years, male, white, stage:Stage III, alive, 1487 days
9.8
TCGA-A3-3324-01A
0 years, male, white, stage:Stage I, alive, 1186 days
9.8
TCGA-CJ-5679-01A
0 years, male, white, stage:Stage III, dead, 679 days
9.8
TCGA-BP-4337-01A
0 years, female, white, stage:Stage III, dead, 2 days
9.8
TCGA-CZ-4856-01A
0 years, female, white, stage:Stage I, alive, 18 days
9.8
TCGA-DV-A4VZ-01A
0 years, male, black or african american, stage:Stage I, alive, 365 days
9.7
TCGA-BP-4803-01A
0 years, male, white, stage:Stage III, alive, 204 days
9.7
TCGA-3Z-A93Z-01A
0 years, male, black or african american, stage:Stage I, alive, 385 days
9.7
TCGA-B8-5163-01A
0 years, female, white, stage:Stage III, alive, 822 days
9.7
TCGA-B8-5553-01A
0 years, female, white, stage:Stage I, alive, 435 days
9.7
TCGA-CJ-4912-01A
0 years, male, white, stage:Stage II, alive, 1657 days
9.7
TCGA-CW-6093-01A
0 years, male, white, stage:Stage I, alive, 3146 days
9.6
TCGA-B2-4098-01A
0 years, female, black or african american, stage:Stage I, dead, 51 days
9.6
TCGA-BP-5006-01A
0 years, male, white, stage:Stage I, alive, 840 days
9.5
TCGA-DV-5575-01A
0 years, female, white, stage:Stage I, alive, 1729 days
9.5
TCGA-BP-4963-01A
0 years, male, white, stage:Stage I, alive, 1834 days
9.5
TCGA-DV-5569-01A
0 years, female, white, stage:Stage I, alive, 355 days
9.5
TCGA-BP-4993-01A
0 years, male, white, stage:Stage I, alive, 177 days
9.5
TCGA-A3-A6NN-01A
0 years, male, black or african american, stage:Stage I, alive, 3 days
9.5
TCGA-BP-4797-01A
0 years, male, white, stage:Stage III, alive, 1107 days
9.4
TCGA-B0-5700-01A
0 years, male, white, stage:Stage I, alive, 1790 days
9.4
TCGA-CJ-4885-01A
0 years, male, white, stage:Stage IV, alive, 3451 days
9.4
TCGA-B8-4151-01A
0 years, female, white, stage:Stage III, alive, 1299 days
9.4
TCGA-BP-4987-01A
0 years, female, asian, stage:Stage I, alive, 1124 days
9.4
TCGA-BP-4777-01A
0 years, male, white, stage:Stage I, alive, 1731 days
9.4
TCGA-BP-5200-01A
0 years, male, white, stage:Stage II, alive, 1063 days
9.3
TCGA-BP-5178-01A
0 years, male, white, stage:Stage IV, dead, 1912 days
9.3
TCGA-BP-5180-01A
0 years, male, white, stage:Stage I, alive, 2263 days
9.3
TCGA-BP-5004-01A
0 years, male, white, stage:Stage I, alive, 1126 days
9.3
TCGA-B8-A54F-01A
0 years, female, black or african american, stage:Stage I, alive, 519 days
9.3
TCGA-BP-4762-01A
0 years, male, white, stage:Stage I, dead, 1343 days
9.2
TCGA-A3-3311-01A
0 years, male, stage:Stage I, dead, 1191 days
9.2
TCGA-A3-3313-01A
0 years, male, black or african american, stage:Stage I, dead, 735 days
9.2
TCGA-CW-6097-01A
0 years, male, white, stage:Stage III, dead, 571 days
9.2
TCGA-B0-5083-01A
0 years, male, white, stage:Stage I, dead, 1045 days
9.2
TCGA-A3-3306-01A
0 years, male, white, stage:Stage I, alive, 1120 days
9.2
TCGA-BP-5182-01A
0 years, male, white, stage:Stage I, alive, 1165 days
9.1
TCGA-CZ-5461-01A
0 years, male, white, stage:Stage IV, dead, 330 days
9.1
TCGA-CJ-4891-01A
0 years, female, white, stage:Stage III, dead, 819 days
9.1
TCGA-BP-5008-01A
0 years, male, white, stage:Stage I, alive, 1071 days
9.1
TCGA-A3-3343-01A
0 years, male, white, stage:Stage II, alive, 945 days
9.0
TCGA-B0-5099-01A
0 years, female, white, stage:Stage III, dead, 485 days
9.0
TCGA-CW-5588-01A
0 years, female, white, stage:Stage I, alive, 2017 days
9.0
TCGA-AK-3436-01A
0 years, male, white, stage:Stage IV, alive, 3331 days
9.0
TCGA-CJ-4644-01A
0 years, female, white, stage:Stage IV, dead, 336 days
8.9
TCGA-CZ-5989-01A
0 years, male, white, stage:Stage II, alive, 1905 days
8.9
TCGA-BP-4176-01A
0 years, male, white, stage:Stage I, alive, 1955 days
8.9
TCGA-CJ-4890-01A
0 years, male, white, stage:Stage IV, alive, 3519 days
8.9
TCGA-B0-4694-01A
0 years, male, white, stage:Stage III, dead, 106 days
8.9
TCGA-BP-4787-01A
0 years, female, white, stage:Stage IV, dead, 480 days
8.8
TCGA-B0-5085-01A
0 years, female, white, stage:Stage III, dead, 770 days
8.8
TCGA-DV-5567-01A
0 years, female, black or african american, stage:Stage I, alive, 2004 days
8.8
TCGA-BP-4964-01A
0 years, female, white, stage:Stage I, alive, 1862 days
8.8
TCGA-B0-4811-01A
0 years, male, white, stage:Stage III, dead, 1417 days
8.7
TCGA-A3-3385-01A
0 years, female, white, stage:Stage I, alive, 1993 days
8.7
TCGA-AK-3458-01A
0 years, male, white, stage:Stage I, alive, 1168 days
8.7
TCGA-BP-5009-01A
0 years, male, white, stage:Stage I, dead, 1092 days
8.7
TCGA-BP-4807-01A
0 years, male, white, stage:Stage I, alive, 211 days
8.6
TCGA-CJ-4918-01A
0 years, male, white, stage:Stage IV, dead, 93 days
8.6
TCGA-EU-5907-01A
0 years, male, white, stage:Stage III, alive, 127 days
8.6
TCGA-CJ-5671-01A
0 years, male, white, stage:Stage I, alive, 3987 days
8.6
TCGA-BP-4758-01A
0 years, male, white, stage:Stage I, alive, 2208 days
8.6
TCGA-A3-3357-01A
0 years, male, white, stage:Stage II, alive, 2688 days
8.6
TCGA-AK-3460-01A
0 years, male, white, stage:Stage I, alive, 2508 days
8.5
TCGA-BP-4975-01A
0 years, male, white, stage:Stage I, alive, 1433 days
8.4
TCGA-B0-4821-01A
0 years, female, asian, stage:Stage III, dead, 1230 days
8.4
TCGA-DV-5565-01A
0 years, male, white, stage:Stage I, alive, 1329 days
8.4
TCGA-BP-4981-01A
0 years, female, white, stage:Stage III, dead, 1097 days
8.4
TCGA-BP-4959-01A
0 years, male, white, stage:Stage I, alive, 2660 days
8.4
TCGA-B0-5121-01A
0 years, male, white, stage:Stage I, alive, 1485 days
8.4
TCGA-B0-4834-01A
0 years, male, white, stage:Stage I, dead, 2090 days
8.4
TCGA-CZ-5466-01A
0 years, male, stage:Stage III, alive, 685 days
8.3
TCGA-CZ-5453-01A
0 years, male, white, stage:Stage II, dead, 2419 days
8.3
TCGA-BP-4167-01A
0 years, male, white, stage:Stage III, alive, 2718 days
8.3
TCGA-B0-5109-01A
0 years, male, white, stage:Stage III, dead, 587 days
8.3
TCGA-A3-3335-01A
0 years, male, white, stage:Stage II, alive, 1886 days
8.3
TCGA-A3-3322-01A
0 years, male, white, stage:Stage I, alive, 1478 days
8.3
TCGA-BP-4170-01A
0 years, female, white, stage:Stage I, dead, 2343 days
8.3
TCGA-DV-5574-01A
0 years, male, white, stage:Stage I, alive, 2016 days
8.2
TCGA-CZ-4857-01A
0 years, male, white, stage:Stage IV, dead, 1432 days
8.1
TCGA-B0-4815-01A
0 years, male, white, stage:Stage III, dead, 1588 days
8.1
TCGA-CZ-5459-01A
0 years, male, white, stage:Stage III, alive, 1683 days
8.1
TCGA-B0-4707-01A
0 years, male, white, stage:Stage III, dead, 600 days
8.1
TCGA-B0-5081-01A
0 years, female, white, stage:Stage III, dead, 362 days
8.1
TCGA-AK-3428-01A
0 years, male, white, stage:Stage III, alive, 3728 days
8.1
TCGA-BP-5000-01A
0 years, male, white, stage:Stage I, alive, 563 days
8.1
TCGA-BP-4781-01A
0 years, male, white, stage:Stage I, alive, 2080 days
8.0
TCGA-B0-4839-01A
0 years, female, white, stage:Stage I, dead, 1639 days
7.9
TCGA-BP-4158-01A
0 years, male, white, stage:Stage I, alive, 3377 days
7.9
TCGA-BP-4969-01A
0 years, female, white, stage:Stage I, alive, 1794 days
7.9
TCGA-CJ-4888-01A
0 years, male, white, stage:Stage IV, dead, 1567 days
7.8
TCGA-CZ-5457-01A
0 years, male, white, stage:Stage III, alive, 2754 days
7.8
TCGA-B8-4619-01A
0 years, male, white, stage:Stage I, alive, 523 days
7.8
TCGA-A3-3358-01A
0 years, female, white, stage:Stage I, alive, 1307 days
7.7
TCGA-B2-4099-01A
0 years, male, white, stage:Stage I, alive, 972 days
7.6
TCGA-CZ-4861-01A
0 years, male, white, stage:Stage II, dead, 446 days
7.6
TCGA-B8-5549-01A
0 years, male, white, stage:Stage I, alive, 194 days
7.6
TCGA-B8-5551-01A
0 years, female, black or african american, stage:Stage I, alive, 16 days
7.5
TCGA-B0-4697-01A
0 years, female, white, stage:Stage IV, dead, 578 days
7.4
TCGA-CJ-4900-01A
0 years, female, white, stage:Stage IV, dead, 1714 days
7.4
TCGA-AK-3426-01A
0 years, male, white, stage:Stage III, dead, 885 days
7.3
TCGA-A3-3374-01A
0 years, female, black or african american, stage:Stage I, alive, 1314 days
7.3
TCGA-BP-4759-01A
0 years, male, white, stage:Stage I, alive, 2372 days
7.2
TCGA-B8-4154-01A
0 years, female, white, stage:Stage I, alive, 1380 days
7.2
TCGA-BP-4761-01A
0 years, male, white, stage:Stage III, alive, 182 days
7.2
TCGA-BP-4776-01A
0 years, male, white, stage:Stage I, alive, 411 days
7.1
TCGA-B2-3924-01A
0 years, male, white, stage:Stage I, alive, 1092 days
7.1
TCGA-AS-3777-01A
0 years, male, white, stage:Stage I, alive, 1238 days
7.0
TCGA-BP-4962-01A
0 years, male, white, stage:Stage II, alive, 1785 days
6.9
TCGA-BP-4338-01A
0 years, male, white, stage:Stage I, alive, 2859 days
6.9
TCGA-BP-4329-01A
0 years, male, white, stage:Stage III, dead, 845 days
6.9
TCGA-BP-5173-01A
0 years, male, white, stage:Stage I, dead, 62 days
6.8
TCGA-CJ-4889-01A
0 years, female, white, stage:Stage I, alive, 1946 days
6.7
TCGA-AK-3451-01A
0 years, male, white, stage:Stage II, alive, 2868 days
6.6
TCGA-MM-A564-01A
0 years, male, black or african american, stage:Stage II, alive, 607 days
6.5
TCGA-BP-4334-01A
0 years, male, white, stage:Stage III, dead, 645 days
6.5
TCGA-B8-A54I-01A
0 years, male, black or african american, stage:Stage I, alive, 150 days
6.5
TCGA-CJ-4870-01A
0 years, female, black or african american, stage:Stage III, alive, 1498 days
6.5
TCGA-BP-4343-01A
0 years, male, white, stage:Stage III, dead, 1912 days
6.4
TCGA-B0-4823-01A
0 years, male, white, stage:Stage I, dead, 454 days
6.3
TCGA-AK-3425-01A
0 years, male, white, stage:Stage I, alive, 3343 days
6.3
TCGA-B0-5703-01A
0 years, male, white, stage:Stage I, alive, 2246 days
6.3
TCGA-CZ-4860-01A
0 years, male, white, stage:Stage IV, dead, 206 days
6.2
TCGA-BP-4992-01A
0 years, male, white, stage:Stage I, alive, 501 days
6.2
TCGA-BP-5198-01A
0 years, male, white, stage:Stage III, alive, 603 days
6.0
TCGA-AK-3427-01A
0 years, male, white, stage:Stage I, alive, 3583 days
5.8
TCGA-B8-5162-01A
0 years, male, white, stage:Stage II, alive, 36 days
5.5
TCGA-BP-5169-01A
0 years, male, white, stage:Stage I, alive, 193 days
5.1
TCGA-AK-3447-01A
0 years, male, white, stage:Stage II, alive, 1217 days
5.0
TCGA-B0-4841-01A
0 years, male, white, stage:Stage IV, dead, 204 days
5.0
TCGA-BP-5185-01A
0 years, male, white, stage:Stage I, alive, 1132 days
4.7
TCGA-BP-4799-01A
0 years, male, white, stage:Stage III, dead, 1133 days
4.5
TCGA-B0-5706-01A
0 years, male, white, stage:Stage II, alive, 3205 days
3.7
TCGA-B0-5702-01A
0 years, male, white, stage:Stage I, alive, 2172 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HDAC8 is not prognostic in Kidney Renal Clear Cell Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.4
Number of samples
100
Samples
Sample
Description
TPM
ccRCC-85
0 years, female, NA, stage:pT1bN0M0, alive, 3330 days
25.8
ccRCC-30
0 years, male, NA, stage:pT2N0M0, dead, 420 days
23.0
ccRCC-10
0 years, male, NA, stage:pT3aN2M1, dead, 90 days
19.8
ccRCC-13
0 years, female, NA, stage:pT3aN2M0, dead, 540 days
17.6
ccRCC-98
0 years, male, NA, stage:pT1aN0M0, alive, 30 days
17.5
ccRCC-1
0 years, female, NA, stage:pT1bN0M0, alive, 3330 days
17.3
ccRCC-5
0 years, male, NA, stage:pT1aN0M0, alive, 2940 days
16.9
ccRCC-27
0 years, male, NA, stage:pT1aN0M0, alive, 1590 days
16.9
ccRCC-62
0 years, male, NA, stage:pT1bN0M0, alive, 1620 days
16.8
ccRCC-106
0 years, male, NA, stage:pT1aN0M0, dead, 1890 days
16.0
ccRCC-28
0 years, male, NA, stage:pT1bN0M0, alive, 1530 days
15.8
ccRCC-41
0 years, male, NA, stage:pT3bN0M0, dead, 540 days
15.7
ccRCC-39
0 years, male, NA, stage:pT2N0M0, alive, 900 days
15.7
ccRCC-58
0 years, male, NA, stage:pT1aN0M0, alive, 1110 days
15.3
ccRCC-65
0 years, male, NA, stage:pT3bN0M1, dead, 300 days
15.2
ccRCC-75
0 years, male, NA, stage:pT3aN1M1, dead, 180 days
15.1
ccRCC-3
0 years, male, NA, stage:pT3bN1M0, dead, 240 days
14.9
ccRCC-81
0 years, male, NA, stage:pT3aN2M0, dead, 1290 days
14.9
ccRCC-8
0 years, male, NA, stage:pT1bN0M0, alive, 2400 days
14.7
ccRCC-19
0 years, female, NA, stage:pT2N0M0, alive, 2100 days
14.7
ccRCC-52
0 years, female, NA, stage:pT3bN0M1, alive, 1350 days
14.7
ccRCC-44
0 years, female, NA, stage:pT1bN0M0, alive, 1050 days
14.6
ccRCC-84
0 years, male, NA, stage:pT1bN0M0, alive, 2010 days
14.3
ccRCC-45
0 years, male, NA, stage:pT1aN0M0, alive, 1020 days
14.0
ccRCC-72
0 years, male, NA, stage:pT1bN0M0, alive, 2760 days
13.8
ccRCC-20
0 years, female, NA, stage:pT3aN0M1, alive, 930 days
13.8
ccRCC-86
0 years, female, NA, stage:pT1bN0M0, alive, 3390 days
13.7
ccRCC-60
0 years, female, NA, stage:pT1aN0M0, alive, 1470 days
13.7
ccRCC-92
0 years, male, NA, stage:pT1aN0M0, alive, 3660 days
13.6
ccRCC-80
0 years, male, NA, stage:pT2N0M0, alive, 3000 days
13.6
ccRCC-94
0 years, male, NA, stage:pT1bN0M0, dead, 480 days
13.5
ccRCC-16
0 years, male, NA, stage:pT2N0M0, alive, 2190 days
13.4
ccRCC-7
0 years, female, NA, stage:pT2N0M0, alive, 330 days
13.2
ccRCC-4
0 years, male, NA, stage:pT1bN0M0, dead, 270 days
13.0
ccRCC-54
0 years, male, NA, stage:pT1bN0M0, alive, 1200 days
13.0
ccRCC-43
0 years, female, NA, stage:pT1bN0M0, alive, 1050 days
12.9
ccRCC-51
0 years, male, NA, stage:pT3aN0M0, alive, 1410 days
12.7
ccRCC-89
0 years, male, NA, stage:pT1aN0M0, alive, 3510 days
12.7
ccRCC-17
0 years, female, NA, stage:pT1bN0M0, alive, 2220 days
12.6
ccRCC-95
0 years, male, NA, stage:pT1bN0M0, alive, 3960 days
12.5
ccRCC-102
0 years, male, NA, stage:pT1bN0M0, alive, 4260 days
12.5
ccRCC-14
0 years, male, NA, stage:pT3cN0M0, alive, 2280 days
12.5
ccRCC-68
0 years, male, NA, stage:pT1bN0M0, alive, 2640 days
12.5
ccRCC-59
0 years, male, NA, stage:pT1bN0M0, alive, 930 days
12.2
ccRCC-18
0 years, female, NA, stage:pT1aN0M0, alive, 2130 days
12.2
ccRCC-87
0 years, male, NA, stage:pT1bN0M0, alive, 2370 days
12.2
ccRCC-46
0 years, male, NA, stage:pT1bN0M0, alive, 990 days
12.1
ccRCC-15
0 years, female, NA, stage:pT2N0M0, dead, 2070 days
12.1
ccRCC-99
0 years, female, NA, stage:pT2N0M0, alive, 3330 days
12.0
ccRCC-38
0 years, male, NA, stage:pT1aN0M0, alive, 1380 days
11.9
ccRCC-49
0 years, male, NA, stage:pT3bN0M0, alive, 1290 days
11.9
ccRCC-100
0 years, male, NA, stage:pT1aN0M0, alive, 4260 days
11.9
ccRCC-56
0 years, male, NA, stage:pT1aN0M0, alive, 1950 days
11.8
ccRCC-21
0 years, male, NA, stage:pT1bN0M0, alive, 1080 days
11.8
ccRCC-90
0 years, male, NA, stage:pT1aN0M0, dead, 1170 days
11.7
ccRCC-35
0 years, male, NA, stage:pT1aN0M0, alive, 1380 days
11.7
ccRCC-6
0 years, male, NA, stage:pT1bN0M0, alive, 2820 days
11.6
ccRCC-66
0 years, female, NA, stage:pT3bN0M1, alive, 2520 days
11.6
ccRCC-67
0 years, male, NA, stage:pT1aN0M0, dead, 1260 days
11.6
ccRCC-11
0 years, male, NA, stage:pT1aN0M0, alive, 2370 days
11.5
ccRCC-42
0 years, male, NA, stage:pT3aN0M0, alive, 1170 days
11.4
ccRCC-83
0 years, male, NA, stage:pT1aN0M0, alive, 300 days
11.4
ccRCC-29
0 years, female, NA, stage:pT1aN0M0, alive, 1710 days
11.3
ccRCC-82
0 years, male, NA, stage:pT1aN0M0, alive, 3090 days
11.3
ccRCC-71
0 years, male, NA, stage:pT1bN0M0, alive, 2160 days
11.3
ccRCC-105
0 years, male, NA, stage:pT1aN0M0, alive, 2190 days
11.2
ccRCC-34
0 years, male, NA, stage:pT3bN0M1, alive, 1530 days
11.2
ccRCC-70
0 years, male, NA, stage:pT4N0M1, dead, 540 days
11.1
ccRCC-40
0 years, male, NA, stage:pT1aN0M0, alive, 1020 days
11.1
ccRCC-24
0 years, male, NA, stage:pT3bN0M0, dead, 750 days
10.9
ccRCC-104
0 years, female, NA, stage:pT1aN0M0, alive, 3480 days
10.9
ccRCC-53
0 years, male, NA, stage:pT1aN0M0, alive, 1260 days
10.8
ccRCC-93
0 years, male, NA, stage:pT1bN0M0, alive, 3660 days
10.7
ccRCC-103
0 years, female, NA, stage:pT1aN0M0, alive, 4350 days
10.7
ccRCC-69
0 years, male, NA, stage:pT1aN0M0, alive, 2670 days
10.7
ccRCC-79
0 years, male, NA, stage:pT1bN0M0, alive, 2670 days
10.7
ccRCC-37
0 years, female, NA, stage:pT1aN0M0, alive, 1500 days
10.6
ccRCC-73
0 years, male, NA, stage:pT1aN0M0, alive, 2640 days
10.6
ccRCC-97
0 years, male, NA, stage:pT1aN2M1, dead, 990 days
10.5
ccRCC-32
0 years, male, NA, stage:pT2N0M0, dead, 1320 days
10.5
ccRCC-48
0 years, male, NA, stage:pT1bN0M0, alive, 990 days
10.4
ccRCC-22
0 years, male, NA, stage:pT3bN0M0, dead, 330 days
10.2
ccRCC-77
0 years, male, NA, stage:pT1bN0M0, alive, 1860 days
10.2
ccRCC-12
0 years, male, NA, stage:pT1aN0M0, alive, 900 days
10.2
ccRCC-61
0 years, male, NA, stage:pT1aN0M0, alive, 1470 days
10.1
ccRCC-76
0 years, female, NA, stage:pT3aN0M1, dead, 960 days
10.0
ccRCC-96
0 years, male, NA, stage:pT1aN0M0, alive, 3930 days
9.9
ccRCC-36
0 years, male, NA, stage:pT2N0M0, alive, 1410 days
9.7
ccRCC-31
0 years, male, NA, stage:pT1aN0M0, alive, 1560 days
9.4
ccRCC-25
0 years, male, NA, stage:pT1aN0M0, alive, 1350 days
9.0
ccRCC-88
0 years, male, NA, stage:pT1aN0M0, alive, 2880 days
9.0
ccRCC-23
0 years, male, NA, stage:pT1bN0M0, alive, 1170 days
9.0
ccRCC-9
0 years, male, NA, stage:pT2N1M1, dead, 360 days
8.9
ccRCC-91
0 years, male, NA, stage:pT1aN0M0, dead, 1890 days
8.1
ccRCC-2
0 years, male, NA, stage:pT1aN0M1, dead, 2190 days
7.9
ccRCC-78
0 years, female, NA, stage:pT1aN0M0, alive, 2610 days
7.6
ccRCC-50
0 years, male, NA, stage:pT3bN0M0, alive, 900 days
7.3
ccRCC-64
0 years, male, NA, stage:pT3aN0M0, alive, 2430 days
7.1
ccRCC-26
0 years, male, NA, stage:pT1bN0M0, alive, 1800 days
6.7
ccRCC-55
0 years, female, NA, stage:pT3bN0M0, alive, 1260 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HDAC8 is not prognostic in Kidney Renal Papillary Cell Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.3
Number of samples
282
Samples
Sample
Description
TPM
TCGA-AL-3471-01A
0 years, male, white, stage:Stage I, dead, 1500 days
42.4
TCGA-B9-5155-01A
0 years, male, white, stage:Stage III, alive, 665 days
36.6
TCGA-UZ-A9PP-01A
0 years, male, white, stage:Stage I, alive, 3010 days
34.8
TCGA-Y8-A8RZ-01A
0 years, male, white, stage:Stage I, alive, 205 days
34.6
TCGA-A4-A5Y1-01A
0 years, male, white, stage:Stage III, dead, 395 days
33.5
TCGA-BQ-5891-01A
0 years, female, white, stage:Stage III, alive, 29 days
32.0
TCGA-J7-6720-01A
0 years, male, asian, stage:Stage I, alive, 388 days
29.8
TCGA-5P-A9JU-01A
0 years, male, white, stage:Stage III, alive, 373 days
29.6
TCGA-G7-A4TM-01A
0 years, male, black or african american, stage:Stage I, alive, 768 days
28.2
TCGA-5P-A9K4-01A
0 years, male, white, stage:'--, alive, 2184 days
26.8
TCGA-DW-7834-01A
0 years, male, white, stage:Stage I, alive, 3950 days
26.6
TCGA-SX-A7SP-01A
0 years, female, white, stage:Stage I, dead, 496 days
25.3
TCGA-KV-A6GE-01A
0 years, male, white, stage:Stage I, alive, 885 days
25.3
TCGA-KV-A74V-01A
0 years, male, white, stage:Stage I, alive, 347 days
25.0
TCGA-AL-3473-01A
0 years, male, white, stage:Stage II, alive, 1906 days
24.3
TCGA-B9-4116-01A
0 years, female, black or african american, stage:'--, alive, 627 days
24.2
TCGA-SX-A7SS-01A
0 years, male, white, stage:Stage I, alive, 1615 days
24.0
TCGA-F9-A97G-01A
0 years, male, asian, stage:Stage III, alive, 13 days
23.5
TCGA-MH-A857-01A
0 years, male, black or african american, stage:Stage I, alive, 890 days
23.2
TCGA-BQ-5876-01A
0 years, male, white, stage:Stage I, alive, 586 days
23.2
TCGA-A4-A57E-01A
0 years, male, white, stage:Stage IV, dead, 258 days
23.2
TCGA-AL-3467-01A
0 years, female, white, stage:'--, alive, 2135 days
23.0
TCGA-B9-4117-01A
0 years, female, black or african american, stage:'--, alive, 14 days
22.4
TCGA-SX-A71V-01A
0 years, male, white, stage:Stage I, alive, 876 days
22.3
TCGA-UZ-A9PM-01A
0 years, male, white, stage:Stage II, alive, 3811 days
22.0
TCGA-B1-7332-01A
0 years, female, black or african american, stage:Stage II, alive, 1141 days
21.8
TCGA-P4-A5EB-01A
0 years, male, white, stage:Stage I, alive, 2477 days
20.9
TCGA-PJ-A5Z9-01A
0 years, female, white, stage:Stage I, alive, 540 days
20.9
TCGA-Y8-A896-01A
0 years, male, white, stage:Stage III, alive, 567 days
20.7
TCGA-A4-7915-01A
0 years, female, black or african american, stage:Stage II, alive, 7 days
20.6
TCGA-A4-A6HP-01A
0 years, male, white, stage:Stage I, alive, 379 days
20.4
TCGA-P4-AAVK-01A
0 years, male, white, stage:Stage III, alive, 1590 days
19.7
TCGA-G7-A8LD-01A
0 years, male, white, stage:Stage III, dead, 514 days
19.4
TCGA-UZ-A9PV-01A
0 years, male, white, stage:Stage I, alive, 1444 days
19.3
TCGA-GL-7773-01A
0 years, male, white, stage:Stage I, alive, 393 days
19.2
TCGA-Y8-A897-01A
0 years, female, white, stage:Stage I, alive, 549 days
19.1
TCGA-A4-8310-01A
0 years, male, white, stage:Stage III, alive, 780 days
18.9
TCGA-IA-A40Y-01A
0 years, female, white, stage:Stage III, alive, 62 days
18.9
TCGA-2Z-A9J6-01A
0 years, male, white, stage:Stage I, alive, 1731 days
18.7
TCGA-GL-8500-01A
0 years, male, white, stage:Stage I, alive, 841 days
18.5
TCGA-4A-A93W-01A
0 years, female, white, stage:Stage I, alive, 4 days
18.4
TCGA-GL-A9DC-01A
0 years, female, white, stage:Stage I, alive, 392 days
18.2
TCGA-B9-A5W7-01A
0 years, male, black or african american, stage:Stage I, alive, 585 days
18.2
TCGA-WN-AB4C-01A
0 years, female, white, stage:Stage I, alive, 1188 days
18.1
TCGA-B9-A5W9-01A
0 years, male, white, stage:Stage I, alive, 5 days
18.0
TCGA-A4-8312-01A
0 years, male, black or african american, stage:Stage I, alive, 708 days
18.0
TCGA-BQ-7055-01A
0 years, male, white, stage:Stage I, alive, 799 days
17.8
TCGA-2Z-A9J2-01A
0 years, female, white, stage:Stage I, alive, 1795 days
17.1
TCGA-SX-A7SR-01A
0 years, male, white, stage:Stage II, alive, 805 days
17.1
TCGA-SX-A71U-01A
0 years, male, white, stage:Stage I, alive, 1357 days
16.8
TCGA-A4-7287-01A
0 years, female, white, stage:Stage I, dead, 597 days
16.8
TCGA-B3-A6W5-01A
0 years, male, black or african american, stage:Stage I, alive, 309 days
16.8
TCGA-MH-A561-01A
0 years, male, white, stage:Stage I, alive, 841 days
16.8
TCGA-2Z-A9JS-01A
0 years, male, white, stage:Stage I, dead, 492 days
16.7
TCGA-AL-3466-01A
0 years, male, white, stage:Stage IV, dead, 293 days
16.7
TCGA-GL-A59T-01A
0 years, male, white, stage:Stage I, alive, 546 days
16.7
TCGA-MH-A856-01A
0 years, male, white, stage:Stage I, alive, 947 days
16.7
TCGA-B1-A657-01A
0 years, male, white, stage:Stage I, alive, 641 days
16.6
TCGA-Y8-A8S0-01A
0 years, male, white, stage:Stage I, alive, 183 days
16.6
TCGA-Y8-A895-01A
0 years, male, white, stage:Stage I, alive, 484 days
16.6
TCGA-5P-A9K6-01A
0 years, male, white, stage:'--, alive, 1914 days
16.6
TCGA-Y8-A894-01A
0 years, female, white, stage:Stage I, alive, 567 days
16.6
TCGA-DW-7839-01A
0 years, female, white, stage:Stage I, alive, 419 days
16.5
TCGA-UN-AAZ9-01A
0 years, female, black or african american, stage:Stage I, alive, 548 days
16.3
TCGA-2Z-A9JR-01A
0 years, male, white, stage:Stage I, alive, 161 days
16.3
TCGA-A4-7997-01A
0 years, male, white, stage:Stage I, alive, 927 days
16.3
TCGA-BQ-5878-01A
0 years, female, white, stage:Stage III, alive, 1938 days
16.1
TCGA-BQ-5890-01A
0 years, male, white, stage:Stage III, alive, 233 days
16.0
TCGA-G7-6796-01A
0 years, male, white, stage:Stage I, alive, 2173 days
16.0
TCGA-IA-A40U-01A
0 years, male, white, stage:Stage III, alive, 511 days
15.9
TCGA-UZ-A9PQ-01A
0 years, male, black or african american, stage:Stage III, dead, 2624 days
15.9
TCGA-UZ-A9PK-01A
0 years, male, white, stage:Stage I, alive, 3571 days
15.8
TCGA-UZ-A9PU-01A
0 years, male, white, stage:Stage I, dead, 933 days
15.8
TCGA-UZ-A9PN-01A
0 years, male, white, stage:Stage III, dead, 1136 days
15.7
TCGA-UZ-A9PR-01A
0 years, male, white, stage:Stage I, alive, 2191 days
15.7
TCGA-SX-A71W-01A
0 years, male, white, stage:Stage I, alive, 1076 days
15.5
TCGA-UZ-A9PS-01A
0 years, female, black or african american, stage:Stage II, alive, 2167 days
15.5
TCGA-MH-A855-01A
0 years, female, black or african american, stage:Stage II, alive, 369 days
15.5
TCGA-A4-8516-01A
0 years, male, white, stage:Stage III, alive, 23 days
15.3
TCGA-B1-A654-01A
0 years, female, black or african american, stage:Stage I, alive, 616 days
15.2
TCGA-A4-A4ZT-01A
0 years, female, white, stage:Stage I, alive, 516 days
15.2
TCGA-2Z-A9J1-01A
0 years, male, white, stage:Stage I, alive, 2298 days
15.2
TCGA-P4-A5E6-01A
0 years, male, black or african american, stage:Stage III, alive, 3035 days
15.2
TCGA-P4-A5E7-01A
0 years, female, white, stage:Stage I, alive, 2649 days
15.1
TCGA-B3-3925-01A
0 years, male, white, stage:Stage III, alive, 1029 days
15.1
TCGA-UZ-A9PJ-01A
0 years, male, white, stage:Stage I, dead, 797 days
15.1
TCGA-5P-A9KF-01A
0 years, male, white, stage:'--, alive, 845 days
15.1
TCGA-G7-7501-01A
0 years, female, black or african american, stage:Stage III, dead, 624 days
14.9
TCGA-G7-A8LE-01A
0 years, male, white, stage:Stage I, alive, 2453 days
14.9
TCGA-B1-A47M-01A
0 years, male, black or african american, stage:Stage III, alive, 659 days
14.9
TCGA-A4-7732-01A
0 years, male, black or african american, stage:'--, alive, 582 days
14.8
TCGA-2Z-A9JE-01A
0 years, male, white, stage:Stage I, alive, 1728 days
14.8
TCGA-5P-A9JY-01A
0 years, male, white, stage:'--, dead, 1508 days
14.8
TCGA-SX-A71S-01A
0 years, female, white, stage:Stage I, alive, 1504 days
14.8
TCGA-B9-4113-01A
0 years, male, black or african american, stage:Stage I, dead, 1536 days
14.7
TCGA-BQ-5884-01A
0 years, female, black or african american, stage:Stage I, alive, 792 days
14.6
TCGA-IA-A83W-01A
0 years, male, white, stage:Stage I, dead, 2043 days
14.6
TCGA-B9-A8YH-01A
0 years, male, black or african american, stage:Stage I, alive, 532 days
14.6
TCGA-5P-A9JV-01A
0 years, male, white, stage:'--, alive, 2043 days
14.6
TCGA-F9-A4JJ-01A
0 years, female, black or african american, stage:Stage III, dead, 325 days
14.5
TCGA-Y8-A898-01A
0 years, male, white, stage:Stage I, alive, 475 days
14.5
TCGA-DW-5561-01A
0 years, male, black or african american, stage:Stage I, alive, 414 days
14.4
TCGA-UZ-A9PX-01A
0 years, male, white, stage:Stage I, alive, 1981 days
14.1
TCGA-BQ-7045-01A
0 years, male, black or african american, stage:Stage I, dead, 1468 days
14.1
TCGA-B3-3926-01A
0 years, female, white, stage:Stage I, alive, 883 days
14.0
TCGA-SX-A7SQ-01A
0 years, male, white, stage:Stage I, alive, 1266 days
14.0
TCGA-5P-A9KA-01A
0 years, male, white, stage:'--, alive, 395 days
14.0
TCGA-GL-7966-01A
0 years, female, white, stage:Stage III, alive, 112 days
13.9
TCGA-SX-A7SM-01A
0 years, male, black or african american, stage:Stage IV, dead, 363 days
13.9
TCGA-2Z-A9JL-01A
0 years, male, black or african american, stage:Stage I, alive, 1006 days
13.8
TCGA-Y8-A8RY-01A
0 years, male, white, stage:Stage I, alive, 769 days
13.8
TCGA-BQ-5888-01A
0 years, female, white, stage:Stage I, alive, 403 days
13.8
TCGA-BQ-5885-01A
0 years, male, white, stage:Stage III, alive, 921 days
13.7
TCGA-HE-A5NH-01A
0 years, male, stage:Stage I, alive, 791 days
13.6
TCGA-HE-7129-01A
male, stage:Stage II, alive, 2492 days
13.6
TCGA-IZ-A6M9-01A
0 years, male, white, stage:Stage I, alive, 376 days
13.6
TCGA-B9-4115-01A
0 years, male, black or african american, stage:Stage I, alive, 803 days
13.6
TCGA-B1-A47O-01A
0 years, female, white, stage:Stage I, alive, 842 days
13.6
TCGA-SX-A7SN-01A
0 years, male, white, stage:Stage I, alive, 578 days
13.6
TCGA-2Z-A9J9-01A
0 years, male, black or african american, stage:Stage I, alive, 2294 days
13.5
TCGA-UZ-A9PZ-01A
0 years, male, white, stage:Stage III, alive, 657 days
13.2
TCGA-5P-A9K9-01A
0 years, female, white, stage:'--, dead, 589 days
13.2
TCGA-A4-7286-01A
0 years, male, white, stage:'--, alive, 554 days
13.0
TCGA-Y8-A8S1-01A
0 years, male, white, stage:Stage I, alive, 404 days
12.9
TCGA-DW-7841-01A
0 years, male, black or african american, stage:Stage I, alive, 445 days
12.9
TCGA-BQ-7051-01A
0 years, male, white, stage:Stage II, alive, 1533 days
12.9
TCGA-PJ-A5Z8-01A
0 years, female, white, stage:Stage I, alive, 600 days
12.9
TCGA-BQ-5889-01A
0 years, male, white, stage:Stage IV, dead, 329 days
12.9
TCGA-A4-7583-01A
0 years, male, black or african american, stage:Stage I, alive, 3 days
12.8
TCGA-A4-A5DU-01A
0 years, female, white, stage:Stage I, alive, 496 days
12.8
TCGA-G7-6793-01A
0 years, female, white, stage:Stage IV, dead, 336 days
12.7
TCGA-IZ-8196-01A
0 years, male, white, stage:Stage I, alive, 649 days
12.7
TCGA-B9-4114-01A
0 years, male, black or african american, stage:'--, alive, 857 days
12.6
TCGA-F9-A8NY-01A
0 years, female, asian, stage:Stage IV, alive, 36 days
12.6
TCGA-B3-4104-01A
0 years, male, white, stage:Stage II, alive, 1049 days
12.6
TCGA-BQ-5883-01A
0 years, female, black or african american, stage:Stage I, alive, 1242 days
12.6
TCGA-2Z-A9JG-01A
0 years, male, white, stage:Stage I, alive, 1662 days
12.6
TCGA-P4-A5E8-01A
0 years, male, white, stage:Stage III, dead, 1306 days
12.6
TCGA-IA-A83S-01A
0 years, male, white, stage:'--, dead, 2609 days
12.5
TCGA-A4-7828-01A
0 years, female, black or african american, stage:Stage I, alive, 238 days
12.5
TCGA-A4-7288-01A
0 years, female, white, stage:'--, alive, 1857 days
12.5
TCGA-DW-7837-01A
0 years, male, black or african american, stage:Stage I, alive, 1142 days
12.4
TCGA-5P-A9JZ-01A
0 years, female, white, stage:'--, alive, 2744 days
12.4
TCGA-MH-A55Z-01A
0 years, male, black or african american, stage:Stage I, alive, 845 days
12.4
TCGA-EV-5901-01A
0 years, female, white, stage:Stage I, alive, 1040 days
12.3
TCGA-BQ-5887-01A
0 years, male, white, stage:Stage III, alive, 771 days
12.3
TCGA-5P-A9JW-01A
0 years, male, white, stage:'--, alive, 3241 days
12.3
TCGA-GL-A9DE-01A
0 years, male, black or african american, stage:Stage I, alive, 496 days
12.3
TCGA-G7-6792-01A
0 years, male, black or african american, stage:Stage I, alive, 2765 days
12.3
TCGA-5P-A9KH-01A
0 years, male, white, stage:'--, alive, 2051 days
12.3
TCGA-A4-8630-01A
0 years, female, white, stage:Stage I, alive, 436 days
12.2
TCGA-BQ-5877-01A
0 years, male, black or african american, stage:Stage IV, dead, 270 days
12.2
TCGA-DZ-6135-01A
0 years, male, stage:Stage I, alive, 2269 days
12.2
TCGA-DW-7836-01A
0 years, male, white, stage:Stage I, alive, 1093 days
12.1
TCGA-AT-A5NU-01A
0 years, male, white, stage:Stage I, alive, 67 days
12.1
TCGA-2Z-A9JM-01A
0 years, male, white, stage:Stage I, alive, 934 days
12.1
TCGA-IA-A83V-01A
0 years, male, white, stage:Stage I, dead, 2941 days
12.0
TCGA-DW-7842-01A
0 years, male, white, stage:Stage I, alive, 92 days
12.0
TCGA-UZ-A9PL-01A
0 years, male, white, stage:Stage II, alive, 3152 days
12.0
TCGA-B1-A656-01A
0 years, male, white, stage:Stage I, alive, 618 days
12.0
TCGA-2Z-A9J3-01A
0 years, male, white, stage:Stage II, dead, 1771 days
12.0
TCGA-BQ-7056-01A
0 years, female, white, stage:Stage III, alive, 612 days
12.0
TCGA-BQ-5893-01A
0 years, male, white, stage:Stage IV, dead, 241 days
11.8
TCGA-MH-A854-01A
0 years, female, black or african american, stage:Stage I, alive, 536 days
11.8
TCGA-A4-A5XZ-01A
0 years, female, white, stage:Stage II, alive, 479 days
11.8
TCGA-2Z-A9J7-01A
0 years, male, white, stage:Stage IV, dead, 139 days
11.8
TCGA-BQ-7062-01A
0 years, male, black or african american, stage:Stage I, alive, 116 days
11.7
TCGA-2Z-A9J8-01A
0 years, male, white, stage:Stage I, alive, 2790 days
11.7
TCGA-F9-A7VF-01A
0 years, female, white, stage:Stage I, alive, 73 days
11.7
TCGA-DW-7840-01A
0 years, male, black or african american, stage:Stage I, alive, 114 days
11.6
TCGA-GL-A59R-01A
0 years, male, white, stage:Stage III, alive, 378 days
11.5
TCGA-A4-7734-01A
0 years, female, white, stage:Stage I, alive, 27 days
11.5
TCGA-2Z-A9JJ-01A
0 years, female, white, stage:Stage I, alive, 1213 days
11.4
TCGA-B9-A44B-01A
0 years, male, black or african american, stage:Stage III, alive, 361 days
11.4
TCGA-G7-6797-01A
0 years, male, white, stage:Stage III, alive, 765 days
11.3
TCGA-A4-7584-01A
0 years, male, black or african american, stage:Stage I, alive, 650 days
11.3
TCGA-AL-3472-01A
0 years, male, black or african american, stage:'--, alive, 2029 days
11.3
TCGA-DW-7838-01A
0 years, male, white, stage:Stage I, alive, 744 days
11.3
TCGA-2Z-A9JD-01A
0 years, male, white, stage:Stage I, alive, 1060 days
11.2
TCGA-A4-7585-01A
0 years, male, white, stage:Stage III, dead, 1070 days
11.2
TCGA-P4-AAVM-01A
0 years, male, white, stage:Stage I, alive, 1539 days
11.0
TCGA-SX-A7SO-01A
0 years, male, white, stage:Stage I, alive, 1257 days
11.0
TCGA-B9-A8YI-01A
0 years, male, black or african american, stage:Stage I, alive, 374 days
11.0
TCGA-GL-6846-01A
0 years, male, white, stage:Stage IV, alive, 5925 days
11.0
TCGA-HE-A5NJ-01A
0 years, male, stage:'--, alive, 1726 days
10.9
TCGA-B9-5156-01A
0 years, male, white, stage:'--, alive, 1338 days
10.9
TCGA-HE-A5NK-01A
0 years, male, stage:'--, alive, 2228 days
10.9
TCGA-EV-5903-01A
0 years, male, white, stage:Stage I, alive, 757 days
10.8
TCGA-HE-7130-01A
female, stage:Stage III, alive, 1770 days
10.8
TCGA-IA-A83T-01A
0 years, male, white, stage:'--, dead, 2684 days
10.8
TCGA-IZ-A6M8-01A
0 years, male, black or african american, stage:Stage I, alive, 497 days
10.8
TCGA-B3-8121-01A
0 years, female, black or african american, stage:Stage I, alive, 379 days
10.7
TCGA-5P-A9KE-01A
0 years, male, white, stage:'--, alive, 824 days
10.6
TCGA-KV-A6GD-01A
0 years, male, white, stage:Stage I, alive, 560 days
10.6
TCGA-5P-A9KC-01A
0 years, female, white, stage:'--, alive, 377 days
10.6
TCGA-BQ-5892-01A
0 years, male, white, stage:Stage I, alive, 364 days
10.5
TCGA-P4-A5EA-01A
0 years, female, white, stage:Stage III, dead, 201 days
10.5
TCGA-DZ-6132-01A
0 years, male, stage:Stage I, alive, 2460 days
10.5
TCGA-2K-A9WE-01A
0 years, male, white, stage:Stage II, alive, 214 days
10.4
TCGA-J7-8537-01A
0 years, female, asian, stage:Stage III, dead, 321 days
10.4
TCGA-2Z-A9JO-01A
0 years, female, black or african american, stage:Stage I, alive, 949 days
10.4
TCGA-2Z-A9J5-01A
0 years, male, white, stage:Stage II, alive, 3050 days
10.4
TCGA-SX-A7SU-01A
0 years, male, stage:Stage I, alive, 1331 days
10.4
TCGA-BQ-7053-01A
0 years, female, black or african american, stage:Stage III, alive, 1516 days
10.3
TCGA-5P-A9K0-01A
0 years, male, white, stage:'--, alive, 677 days
10.3
TCGA-UZ-A9Q1-01A
0 years, female, white, stage:Stage I, alive, 730 days
10.3
TCGA-MH-A562-01A
0 years, male, black or african american, stage:Stage I, alive, 616 days
10.2
TCGA-BQ-7046-01A
0 years, male, white, stage:Stage I, alive, 2948 days
10.2
TCGA-O9-A75Z-01A
0 years, male, white, stage:Stage I, alive, 471 days
10.2
TCGA-GL-A9DD-01A
0 years, male, white, stage:Stage I, alive, 341 days
10.2
TCGA-MH-A55W-01A
0 years, male, black or african american, stage:Stage I, alive, 1043 days
10.1
TCGA-B3-4103-01A
0 years, male, white, stage:Stage I, alive, 930 days
10.1
TCGA-AL-A5DJ-01A
0 years, female, white, stage:Stage III, dead, 1498 days
10.0
TCGA-BQ-7060-01A
0 years, male, american indian or alaska native, stage:Stage I, alive, 214 days
10.0
TCGA-5P-A9K3-01A
0 years, male, white, stage:'--, dead, 471 days
10.0
TCGA-B9-A69E-01A
0 years, male, white, stage:Stage III, alive, 452 days
9.9
TCGA-BQ-5875-01A
0 years, female, white, stage:Stage III, alive, 2639 days
9.8
TCGA-BQ-5882-01A
0 years, male, stage:Stage III, dead, 658 days
9.7
TCGA-2Z-A9JK-01A
0 years, male, white, stage:Stage III, alive, 1186 days
9.7
TCGA-BQ-7049-01A
0 years, female, white, stage:Stage I, dead, 1364 days
9.6
TCGA-G7-6789-01A
0 years, female, white, stage:Stage IV, dead, 122 days
9.5
TCGA-A4-8518-01A
0 years, male, white, stage:Stage I, alive, 600 days
9.4
TCGA-BQ-5879-01A
0 years, female, white, stage:Stage III, dead, 697 days
9.4
TCGA-WN-A9G9-01A
0 years, male, white, stage:Stage I, alive, 791 days
9.3
TCGA-BQ-7059-01A
0 years, male, white, stage:Stage I, alive, 232 days
9.3
TCGA-UZ-A9PO-01A
0 years, male, white, stage:Stage I, alive, 1911 days
9.2
TCGA-AL-3468-01A
0 years, male, white, stage:Stage II, dead, 2331 days
9.1
TCGA-A4-8311-01A
0 years, male, white, stage:Stage I, alive, 729 days
9.1
TCGA-BQ-7044-01A
0 years, male, white, stage:Stage III, alive, 3760 days
9.1
TCGA-BQ-5886-01A
0 years, male, white, stage:Stage III, alive, 792 days
8.9
TCGA-2Z-A9JI-01A
0 years, male, white, stage:Stage III, alive, 1567 days
8.9
TCGA-MH-A560-01A
0 years, male, white, stage:Stage I, alive, 924 days
8.9
TCGA-2Z-A9JN-01A
0 years, female, black or african american, stage:Stage I, alive, 740 days
8.8
TCGA-J7-A8I2-01A
0 years, male, asian, stage:Stage I, alive, 307 days
8.8
TCGA-B1-5398-01A
0 years, male, white, stage:Stage III, alive, 1251 days
8.7
TCGA-P4-AAVO-01A
0 years, male, white, stage:Stage I, alive, 2400 days
8.7
TCGA-B9-4617-01A
0 years, male, black or african american, stage:'--, alive, 35 days
8.5
TCGA-2Z-A9JQ-01A
0 years, male, white, stage:Stage I, alive, 778 days
8.4
TCGA-2Z-A9JP-01A
0 years, male, white, stage:Stage I, alive, 893 days
8.3
TCGA-BQ-7061-01A
0 years, female, white, stage:Stage I, alive, 218 days
8.3
TCGA-AL-7173-01A
0 years, female, white, stage:Stage IV, alive, 2060 days
8.3
TCGA-BQ-5880-01A
0 years, male, white, stage:Stage III, dead, 1314 days
8.2
TCGA-HE-A5NF-01A
0 years, male, stage:Stage I, alive, 2582 days
8.1
TCGA-P4-A5ED-01A
0 years, male, white, stage:Stage I, alive, 2816 days
8.1
TCGA-Q2-A5QZ-01A
0 years, female, black or african american, stage:Stage III, alive, 428 days
8.1
TCGA-HE-A5NL-01A
0 years, male, stage:Stage I, alive, 767 days
8.0
TCGA-DZ-6131-01A
0 years, male, white, stage:Stage III, alive, 2429 days
7.7
TCGA-BQ-7048-01A
0 years, male, white, stage:Stage III, alive, 2839 days
7.6
TCGA-BQ-5894-01A
0 years, male, stage:Stage IV, alive, 84 days
7.6
TCGA-G7-A8LC-01A
0 years, male, white, stage:Stage I, alive, 702 days
7.6
TCGA-IZ-8195-01A
0 years, male, white, stage:Stage II, alive, 677 days
7.6
TCGA-BQ-7050-01A
0 years, female, white, stage:Stage I, alive, 1864 days
7.5
TCGA-B1-A655-01A
0 years, female, white, stage:Stage I, alive, 510 days
7.3
TCGA-4A-A93X-01A
0 years, male, white, stage:Stage IV, alive, 390 days
7.2
TCGA-5P-A9K8-01A
0 years, female, white, stage:'--, alive, 1309 days
7.0
TCGA-A4-8517-01A
0 years, male, white, stage:Stage I, alive, 597 days
6.9
TCGA-4A-A93Y-01A
0 years, female, black or african american, stage:Stage II, alive, 352 days
6.8
TCGA-SX-A71R-01A
0 years, male, white, stage:Stage I, alive, 1457 days
6.5
TCGA-B1-A47N-01A
0 years, male, white, stage:Stage I, alive, 1110 days
6.4
TCGA-IA-A40X-01A
0 years, female, black or african american, stage:Stage I, alive, 608 days
6.4
TCGA-BQ-7058-01A
0 years, male, white, stage:Stage III, dead, 343 days
6.3
TCGA-A4-8098-01A
0 years, male, black or african american, stage:Stage I, alive, 896 days
6.1
TCGA-F9-A7Q0-01A
0 years, female, asian, stage:Stage I, alive, 398 days
6.1
TCGA-HE-A5NI-01A
0 years, male, stage:Stage I, alive, 360 days
5.8
TCGA-A4-8515-01A
0 years, male, american indian or alaska native, stage:Stage I, alive, 709 days
5.5
TCGA-G7-A8LB-01A
0 years, male, white, stage:Stage IV, alive, 547 days
5.4
TCGA-2Z-A9JT-01A
0 years, male, white, stage:Stage I, alive, 684 days
5.2
TCGA-A4-A5Y0-01A
0 years, female, white, stage:Stage I, alive, 252 days
4.9
TCGA-G7-6795-01A
0 years, male, white, stage:Stage I, alive, 1194 days
4.3
TCGA-EV-5902-01A
0 years, male, white, stage:Stage I, alive, 578 days
3.9
TCGA-A4-A48D-01A
0 years, male, black or african american, stage:Stage I, alive, 379 days
3.9
TCGA-BQ-5881-01A
0 years, male, white, stage:Stage I, alive, 1454 days
2.8
TCGA-UZ-A9Q0-01A
0 years, male, white, stage:Stage I, alive, 3368 days
2.5
TCGA-DW-5560-01A
0 years, female, white, stage:Stage I, alive, 1486 days
1.3
TCGA-DZ-6133-01A
0 years, female, white, stage:Stage I, dead, 1557 days
0.2
TCGA-V9-A7HT-01A
0 years, male, black or african american, stage:Stage II, alive, 965 days
0.0
TCGA-P4-AAVL-01A
0 years, male, white, stage:Stage III, dead, 487 days
0.0
TCGA-DZ-6134-01A
0 years, male, white, stage:Stage I, alive, 1856 days
0.0
TCGA-5P-A9K2-01A
0 years, male, white, stage:'--, alive, 2392 days
0.0
TCGA-SX-A7SL-01A
0 years, male, stage:Stage I, alive, 823 days
0.0
TCGA-GL-A4EM-01A
0 years, male, white, stage:Stage I, alive, 32 days
0.0
TCGA-B9-A5W8-01A
0 years, male, black or african american, stage:Stage II, alive, 524 days
0.0
Show allShow less
RENAL CELL CARCINOMA - Protein relative expression (CPTAC)
Number of samples
194
Samples
Sample ID
Sample type
nRPX
CPT0078510003
Tumor
0.9
CPT0077110003
Tumor
0.8
CPT0023690003
Tumor
0.7
CPT0024670003
Tumor
0.6
CPT0023350003
Tumor
0.6
CPT0086950003
Tumor
0.5
CPT0079180003
Tumor
0.5
CPT0075560003
Tumor
0.5
CPT0001540009
Tumor
0.5
CPT0019990003
Tumor
0.5
CPT0017850003
Tumor
0.5
CPT0012180003
Tumor
0.4
CPT0066470004
Tumor
0.4
CPT0020120003
Tumor
0.4
CPT0012670003
Tumor
0.4
CPT0019130003
Tumor
0.4
CPT0078660003
Tumor
0.4
CPT0014450004
Tumor
0.4
CPT0065810003
Tumor
0.4
CPT0000640003
Tumor
0.4
CPT0000870016
Tumor
0.4
CPT0085670003
Tumor
0.4
CPT0012280003
Tumor
0.4
CPT0011410003
Tumor
0.4
CPT0087040003
Tumor
0.3
CPT0021240003
Tumor
0.3
CPT0089020003
Tumor
0.3
CPT0064370003
Tumor
0.3
CPT0078930003
Tumor
0.3
CPT0077310003
Tumor
0.3
CPT0015730003
Tumor
0.3
CPT0006900003
Tumor
0.3
CPT0009000003
Tumor
0.3
CPT0001500009
Tumor
0.3
CPT0063630003
Tumor
0.3
CPT0084560003
Tumor
0.3
CPT0078990003
Tumor
0.3
CPT0065870003
Tumor
0.3
CPT0065430003
Tumor
0.3
CPT0025580004
Tumor
0.3
CPT0012900004
Tumor
0.3
CPT0063320003
Tumor
0.3
CPT0025050003
Tumor
0.2
CPT0079230003
Tumor
0.2
CPT0007320003
Tumor
0.2
CPT0025110003
Tumor
0.2
CPT0076330003
Tumor
0.2
CPT0092740003
Normal
0.2
CPT0088690003
Tumor
0.2
CPT0065750003
Tumor
0.2
CPT0092790003
Tumor
0.2
CPT0088480003
Tumor
0.2
CPT0069000003
Tumor
0.2
CPT0086030003
Tumor
0.2
CPT0088630003
Tumor
0.2
CPT0001220008
Tumor
0.2
CPT0086360003
Tumor
0.1
CPT0007870001
Normal
0.1
CPT0065930003
Tumor
0.1
CPT0079270003
Tumor
0.1
CPT0012370003
Tumor
0.1
CPT0089460004
Tumor
0.1
CPT0020020001
Normal
0.1
CPT0086820003
Tumor
0.1
CPT0015910003
Tumor
0.1
CPT0006950001
Normal
0.1
CPT0002350011
Tumor
0.1
CPT0065690003
Tumor
0.1
CPT0011240003
Tumor
0.1
CPT0086870003
Tumor
0.1
CPT0026410003
Tumor
0.1
CPT0006630003
Tumor
0.1
CPT0001260009
Tumor
0.1
CPT0025350003
Tumor
0.1
CPT0081880003
Tumor
0.1
CPT0025610001
Normal
0.1
CPT0012550003
Tumor
0.1
CPT0020130001
Normal
0.1
CPT0006730001
Normal
0.1
CPT0025230003
Tumor
0.1
CPT0025290003
Tumor
0.0
CPT0088900003
Tumor
0.0
CPT0088780001
Normal
0.0
CPT0001340003
Tumor
0.0
CPT0092310003
Normal
0.0
CPT0012290003
Normal
0.0
CPT0012570003
Normal
0.0
CPT0000790001
Normal
0.0
CPT0079510001
Normal
0.0
CPT0014370004
Tumor
0.0
CPT0009060003
Tumor
0.0
CPT0069160003
Tumor
0.0
CPT0002370001
Normal
0.0
CPT0076350001
Normal
0.0
CPT0079410003
Tumor
0.0
CPT0065450001
Normal
0.0
CPT0001350001
Normal
0.0
CPT0010160003
Tumor
0.0
CPT0078670001
Normal
0.0
CPT0024680001
Normal
0.0
CPT0075130003
Tumor
0.0
CPT0088760003
Tumor
0.0
CPT0012770003
Normal
0.0
CPT0081620001
Normal
0.0
CPT0075170001
Normal
0.0
CPT0018250001
Normal
0.0
CPT0013790003
Normal
0.0
CPT0025170003
Tumor
0.0
CPT0015810003
Tumor
0.0
CPT0081600003
Tumor
0.0
CPT0071150004
Tumor
0.0
CPT0092190003
Normal
0.0
CPT0087050003
Normal
0.0
CPT0010110003
Tumor
0.0
CPT0081990003
Tumor
0.0
CPT0088710001
Normal
0.0
CPT0001550001
Normal
0.0
CPT0023710001
Normal
0.0
CPT0001270001
Normal
0.0
CPT0010120001
Normal
0.0
CPT0079480003
Tumor
0.0
CPT0001230001
Normal
0.0
CPT0012090003
Normal
-0.1
CPT0069190001
Normal
-0.1
CPT0077140001
Normal
-0.1
CPT0026420001
Normal
-0.1
CPT0006440003
Tumor
-0.1
CPT0077500001
Normal
-0.1
CPT0014160003
Tumor
-0.1
CPT0082010001
Normal
-0.1
CPT0009080003
Normal
-0.1
CPT0077320001
Normal
-0.1
CPT0014130001
Normal
-0.1
CPT0063330001
Normal
-0.1
CPT0006530001
Normal
-0.1
CPT0069010001
Normal
-0.1
CPT0025060001
Normal
-0.1
CPT0075720003
Tumor
-0.1
CPT0066430001
Normal
-0.1
CPT0000780007
Tumor
-0.1
CPT0092800003
Normal
-0.1
CPT0012080003
Tumor
-0.1
CPT0001180009
Tumor
-0.1
CPT0086830003
Normal
-0.1
CPT0025920001
Normal
-0.1
CPT0066480003
Tumor
-0.1
CPT0092160003
Tumor
-0.1
CPT0066520001
Normal
-0.2
CPT0088920001
Normal
-0.2
CPT0007860003
Tumor
-0.2
CPT0089040001
Normal
-0.2
CPT0084590001
Normal
-0.2
CPT0000660001
Normal
-0.2
CPT0063640001
Normal
-0.2
CPT0088970003
Tumor
-0.2
CPT0092730003
Tumor
-0.2
CPT0086890003
Normal
-0.2
CPT0009020003
Normal
-0.2
CPT0077490003
Tumor
-0.2
CPT0089480003
Normal
-0.2
CPT0086370003
Normal
-0.2
CPT0088550004
Tumor
-0.2
CPT0088640003
Normal
-0.2
CPT0079380003
Tumor
-0.2
CPT0079430001
Normal
-0.2
CPT0065820001
Normal
-0.2
CPT0014470001
Normal
-0.2
CPT0075570001
Normal
-0.2
CPT0012920003
Normal
-0.2
CPT0012640003
Normal
-0.2
CPT0079300001
Normal
-0.3
CPT0088500001
Normal
-0.3
CPT0001190001
Normal
-0.3
CPT0092290003
Tumor
-0.3
CPT0088570001
Normal
-0.3
CPT0017450001
Normal
-0.3
CPT0078830003
Tumor
-0.3
CPT0023360001
Normal
-0.3
CPT0002270011
Tumor
-0.3
CPT0078530001
Normal
-0.3
CPT0014350001
Normal
-0.3
CPT0086970003
Normal
-0.3
CPT0078940001
Normal
-0.3
CPT0000890001
Normal
-0.3
CPT0001510001
Normal
-0.3
CPT0010170001
Normal
-0.3
CPT0078840001
Normal
-0.3
CPT0007470001
Normal
-0.3
CPT0064400001
Normal
-0.4
CPT0025880003
Tumor
-0.4
CPT0017410003
Tumor
-0.4
CPT0019160001
Normal
-0.5
CPT0079000001
Normal
-0.6
CPT0078800003
Tumor
-2.1
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RENAL CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.