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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HDAC8 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
37.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
29.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
28.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
28.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
26.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
26.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
25.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
24.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
24.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
23.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
22.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
21.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
21.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
21.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
21.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
20.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
20.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
19.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
19.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
19.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
19.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
19.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
18.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
18.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
18.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
18.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
18.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
17.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
17.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
17.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
17.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
17.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
17.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
17.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
16.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
16.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
16.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
16.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
16.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
16.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
16.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
16.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
15.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
15.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
15.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
15.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
15.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
15.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
15.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
15.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
15.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
15.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
15.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
15.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
14.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
14.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
14.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
14.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
14.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
14.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
14.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
14.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
14.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
14.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
13.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
13.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
13.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
13.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
13.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
13.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
13.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
13.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
13.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
13.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
13.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
13.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
12.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
12.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
12.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
12.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
12.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
12.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
12.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
12.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
12.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
12.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
12.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
12.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
12.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
12.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
12.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
12.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
12.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
11.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
11.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
11.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
11.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
11.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
11.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
11.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
11.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
11.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
11.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
11.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
11.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
11.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
11.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
11.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
11.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
11.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
11.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
11.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
11.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
11.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
11.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
11.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
11.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
11.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
11.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
11.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
11.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
11.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
11.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
11.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
11.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
10.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
10.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
10.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
10.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
10.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
10.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
10.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
10.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
10.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
10.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
10.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
10.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
10.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
10.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
10.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
10.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
10.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
10.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
10.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
10.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
10.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
10.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
10.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
10.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
10.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
10.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
10.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
10.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
10.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
10.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
10.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
10.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
10.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
10.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
10.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
10.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
10.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
10.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
10.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
10.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
10.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
10.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
10.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
10.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
10.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
10.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
10.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
10.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
10.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
10.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
10.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
10.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
9.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
9.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
9.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
9.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
9.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
9.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
9.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
9.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
9.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
9.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
9.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
9.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
9.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
9.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
9.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
9.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
9.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
9.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
9.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
9.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
9.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
9.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
9.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
9.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
9.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
9.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
9.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
9.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
9.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
9.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
9.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
9.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
9.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
9.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
9.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
9.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
9.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
9.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
9.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
9.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
9.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
9.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
9.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
9.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
9.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
8.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
8.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
8.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
8.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
8.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
8.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
8.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
8.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
8.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
8.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
8.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
8.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
8.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
8.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
8.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
8.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
8.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
8.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
8.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
8.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
8.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
8.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
8.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
8.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
8.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
8.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
8.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
8.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
8.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
8.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
8.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
8.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
8.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
8.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
8.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
8.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
7.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
7.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
7.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
7.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
7.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
7.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
7.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
7.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
7.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
7.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
7.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
7.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
7.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
7.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
7.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
7.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
7.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
7.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
7.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
7.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
7.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
7.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
7.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
7.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
7.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
7.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
7.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
7.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
7.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
7.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
7.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
7.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
7.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
7.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
7.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
6.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
6.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
6.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
6.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
6.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
6.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
6.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
6.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
6.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
6.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
6.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
6.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
6.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
6.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
6.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
6.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
6.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
6.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
6.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
6.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
6.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
6.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
6.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
6.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
5.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
5.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
5.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
5.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
5.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
5.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
5.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
5.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
4.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
4.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
2.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HDAC8 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.1
Number of samples
231
Samples
Sample
Description
TPM
DO50845
0 years, male, NA, stage:3, alive, 210 days
31.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
24.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
17.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
14.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
13.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
13.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
12.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
12.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
12.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
12.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
11.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
11.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
11.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
11.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
11.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
10.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
10.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
10.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
9.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
9.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
9.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
9.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
9.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
9.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
9.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
9.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
9.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
9.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
9.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
8.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
8.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
8.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
8.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
8.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
8.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
8.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
8.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
8.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
8.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
8.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
7.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
7.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
7.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
7.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
7.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
7.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
7.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
7.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
7.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
7.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
7.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
7.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
7.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
7.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
7.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
7.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
7.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
7.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
7.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
7.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
7.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
7.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
7.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
6.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
6.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
6.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
6.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
6.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
6.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
6.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
6.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
6.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
6.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
6.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
6.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
6.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
6.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
6.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
6.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
6.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
6.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
6.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
6.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
6.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
6.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
6.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
6.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
6.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
5.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
5.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
5.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
5.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
5.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
5.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
5.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
5.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
5.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
5.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
5.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
5.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
5.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
5.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
5.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
5.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
5.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
5.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
5.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
5.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
5.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
5.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
5.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
5.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
5.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
5.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
5.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
5.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
5.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
5.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
5.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
5.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
5.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
5.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
5.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
5.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
5.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
5.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
5.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
5.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
5.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
5.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
5.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
5.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
5.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
5.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
5.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
4.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
4.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
4.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
4.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
4.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
4.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
4.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
4.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
4.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
4.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
4.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
4.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
4.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
4.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
4.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
4.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
4.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
4.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
4.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
4.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
4.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
4.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
4.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
4.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
4.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
4.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
4.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
4.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
4.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
4.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
4.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
4.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
4.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
4.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
4.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
4.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
4.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
4.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
4.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
4.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
4.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
4.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
4.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
4.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
4.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
4.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
4.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
4.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
4.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
3.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
3.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
3.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
3.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
3.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
3.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
3.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
3.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
3.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
3.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
3.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
3.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
3.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
3.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
3.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
3.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
3.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
3.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
3.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
3.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
3.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
3.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
3.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
3.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
3.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
3.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
3.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
3.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
3.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
3.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
3.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
3.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
3.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
2.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
2.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
2.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
2.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
2.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
2.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
2.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
2.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
2.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
965
Tumor
1.3
367
Tumor
1.0
1027
Tumor
1.0
351
Tumor
0.8
285
Tumor
0.8
257
Tumor
0.8
171
Tumor
0.8
813
Tumor
0.8
481
Tumor
0.7
411
Tumor
0.7
147
Tumor
0.7
375
Tumor
0.7
545
Tumor
0.7
361
Tumor
0.7
487
Tumor
0.6
777
Tumor
0.6
231
Tumor
0.6
815
Tumor
0.6
785
Tumor
0.6
537
Tumor
0.6
131
Tumor
0.5
365
Tumor
0.5
724
Normal
0.5
478
Normal
0.5
172
Normal
0.5
865
Tumor
0.5
493
Tumor
0.5
851
Tumor
0.5
343
Tumor
0.4
161
Tumor
0.4
472
Normal
0.4
685
Tumor
0.4
938
Normal
0.4
491
Tumor
0.4
211
Tumor
0.4
527
Tumor
0.4
473
Tumor
0.4
261
Tumor
0.4
917
Tumor
0.4
477
Tumor
0.3
462
Normal
0.3
137
Tumor
0.3
913
Tumor
0.3
534
Normal
0.3
383
Tumor
0.3
925
Tumor
0.3
482
Normal
0.3
877
Tumor
0.3
185
Tumor
0.3
384
Normal
0.3
943
Tumor
0.3
187
Tumor
0.3
162
Normal
0.3
445
Tumor
0.3
271
Tumor
0.3
546
Normal
0.3
982
Normal
0.3
861
Tumor
0.3
881
Tumor
0.2
533
Tumor
0.2
188
Normal
0.2
1014
Normal
0.2
467
Tumor
0.2
483
Tumor
0.2
283
Tumor
0.2
497
Tumor
0.2
921
Tumor
0.2
538
Normal
0.2
727
Tumor
0.2
425
Tumor
0.2
227
Tumor
0.2
433
Tumor
0.2
756
Normal
0.2
366
Normal
0.2
136
Normal
0.2
528
Normal
0.2
431
Tumor
0.2
963
Tumor
0.2
863
Tumor
0.2
362
Normal
0.2
1013
Tumor
0.1
695
Tumor
0.1
915
Tumor
0.1
484
Normal
0.1
1021
Tumor
0.1
434
Normal
0.1
268
Normal
0.1
463
Tumor
0.1
465
Tumor
0.1
474
Normal
0.1
376
Normal
0.1
391
Tumor
0.1
617
Tumor
0.1
778
Normal
0.1
984
Normal
0.1
455
Tumor
0.1
978
Normal
0.1
186
Normal
0.1
267
Tumor
0.1
132
Normal
0.1
1016
Normal
0.1
553
Tumor
0.1
953
Tumor
0.1
327
Tumor
0.1
123
Tumor
0.1
451
Tumor
0.1
713
Tumor
0.1
424
Normal
0.1
141
Tumor
0.1
721
Tumor
0.1
737
Tumor
0.1
461
Tumor
0.1
814
Normal
0.1
647
Tumor
0.0
937
Tumor
0.0
112
Tumor
0.0
262
Normal
0.0
923
Tumor
0.0
428
Normal
0.0
494
Normal
0.0
212
Normal
0.0
1031
Tumor
0.0
924
Normal
0.0
554
Normal
0.0
145
Tumor
0.0
981
Tumor
0.0
498
Normal
0.0
492
Normal
0.0
716
Normal
0.0
665
Tumor
0.0
272
Normal
0.0
663
Tumor
0.0
368
Normal
0.0
446
Normal
0.0
722
Normal
0.0
883
Tumor
0.0
352
Normal
0.0
741
Tumor
0.0
661
Tumor
0.0
148
Normal
0.0
436
Normal
0.0
393
Tumor
0.0
745
Tumor
0.0
882
Normal
-0.1
284
Normal
-0.1
443
Tumor
-0.1
966
Normal
-0.1
884
Normal
-0.1
422
Normal
-0.1
427
Tumor
-0.1
447
Tumor
-0.1
414
Normal
-0.1
488
Normal
-0.1
357
Tumor
-0.1
968
Normal
-0.1
743
Tumor
-0.1
954
Normal
-0.1
466
Normal
-0.1
671
Tumor
-0.1
976
Normal
-0.1
635
Tumor
-0.1
113
Tumor
-0.1
471
Tumor
-0.1
914
Normal
-0.1
964
Normal
-0.1
385
Tumor
-0.1
852
Normal
-0.1
353
Tumor
-0.1
672
Normal
-0.1
714
Normal
-0.1
421
Tumor
-0.1
468
Normal
-0.1
723
Tumor
-0.2
738
Normal
-0.2
228
Normal
-0.2
356
Normal
-0.2
878
Normal
-0.2
686
Normal
-0.2
696
Normal
-0.2
944
Normal
-0.2
435
Tumor
-0.2
358
Normal
-0.2
426
Normal
-0.2
956
Normal
-0.2
911
Tumor
-0.2
912
Normal
-0.2
354
Normal
-0.2
958
Normal
-0.2
1015
Tumor
-0.2
823
Tumor
-0.2
125
Tumor
-0.2
386
Normal
-0.2
957
Tumor
-0.2
452
Normal
-0.2
955
Tumor
-0.2
967
Tumor
-0.2
715
Tumor
-0.2
755
Tumor
-0.2
1026
Normal
-0.2
363
Tumor
-0.2
916
Normal
-0.2
135
Tumor
-0.2
232
Normal
-0.2
975
Tumor
-0.2
918
Normal
-0.2
862
Normal
-0.3
138
Normal
-0.3
416
Normal
-0.3
1041
Tumor
-0.3
817
Tumor
-0.3
1022
Normal
-0.3
1042
Normal
-0.3
444
Normal
-0.3
456
Normal
-0.3
664
Normal
-0.3
114
Normal
-0.3
824
Normal
-0.3
432
Normal
-0.3
744
Normal
-0.3
394
Normal
-0.3
258
Normal
-0.3
627
Tumor
-0.3
728
Normal
-0.3
662
Normal
-0.3
1043
Tumor
-0.3
396
Normal
-0.3
1032
Normal
-0.3
146
Normal
-0.3
388
Normal
-0.3
867
Tumor
-0.3
742
Normal
-0.3
786
Normal
-0.3
666
Normal
-0.3
816
Normal
-0.3
648
Normal
-0.3
328
Normal
-0.3
395
Tumor
-0.3
387
Tumor
-0.3
423
Tumor
-0.3
392
Normal
-0.3
874
Normal
-0.4
448
Normal
-0.4
341
Tumor
-0.4
1028
Normal
-0.4
618
Normal
-0.4
746
Normal
-0.4
641
Tumor
-0.4
535
Tumor
-0.4
413
Tumor
-0.4
977
Tumor
-0.4
342
Normal
-0.4
224
Normal
-0.4
364
Normal
-0.4
286
Normal
-0.4
818
Normal
-0.4
355
Tumor
-0.4
857
Tumor
-0.4
698
Normal
-0.4
697
Tumor
-0.4
615
Tumor
-0.4
415
Tumor
-0.4
223
Tumor
-0.4
926
Normal
-0.4
642
Normal
-0.4
344
Normal
-0.5
464
Normal
-0.5
126
Normal
-0.5
952
Normal
-0.5
412
Normal
-0.5
858
Normal
-0.5
983
Tumor
-0.5
864
Normal
-0.5
536
Normal
-0.5
1046
Normal
-0.5
866
Normal
-0.5
868
Normal
-0.5
951
Tumor
-0.5
1045
Tumor
-0.5
922
Normal
-0.5
873
Tumor
-0.5
1025
Tumor
-0.5
628
Normal
-0.6
142
Normal
-0.6
1044
Normal
-0.7
636
Normal
-0.7
128
Normal
-0.7
111
Normal
-0.7
616
Normal
-0.8
124
Normal
-1.0
127
Tumor
-1.3
277
Tumor
N/A
278
Normal
N/A
297
Tumor
N/A
298
Normal
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
513
Tumor
N/A
514
Normal
N/A
515
Tumor
N/A
516
Normal
N/A
517
Tumor
N/A
518
Normal
N/A
523
Tumor
N/A
524
Normal
N/A
525
Tumor
N/A
526
Normal
N/A
311
Tumor
N/A
312
Normal
N/A
313
Tumor
N/A
314
Normal
N/A
557
Tumor
N/A
558
Normal
N/A
563
Tumor
N/A
564
Normal
N/A
567
Tumor
N/A
568
Normal
N/A
571
Tumor
N/A
572
Normal
N/A
331
Tumor
N/A
573
Tumor
N/A
332
Normal
N/A
574
Normal
N/A
213
Tumor
N/A
214
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
221
Tumor
N/A
222
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
