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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ZMAT2 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
47.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
131.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
131.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
113.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
111.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
108.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
106.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
101.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
98.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
96.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
93.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
93.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
90.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
90.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
84.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
83.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
82.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
79.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
79.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
79.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
79.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
77.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
77.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
76.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
76.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
76.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
75.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
74.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
73.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
73.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
73.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
72.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
71.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
70.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
70.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
70.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
70.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
70.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
70.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
69.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
69.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
69.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
69.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
68.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
67.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
67.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
67.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
67.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
67.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
66.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
66.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
66.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
66.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
65.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
65.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
65.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
65.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
65.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
65.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
65.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
64.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
64.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
64.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
64.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
64.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
64.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
63.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
63.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
63.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
63.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
63.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
62.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
62.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
61.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
61.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
61.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
61.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
61.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
61.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
61.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
61.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
61.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
61.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
60.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
60.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
60.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
59.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
59.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
59.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
57.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
57.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
57.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
57.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
57.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
56.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
56.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
56.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
56.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
56.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
55.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
55.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
55.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
55.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
54.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
54.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
54.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
54.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
54.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
54.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
54.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
54.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
54.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
53.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
53.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
53.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
53.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
53.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
52.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
52.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
52.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
52.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
52.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
52.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
52.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
52.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
51.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
51.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
51.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
51.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
51.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
51.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
50.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
50.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
50.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
50.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
50.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
49.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
49.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
49.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
49.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
49.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
49.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
48.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
48.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
48.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
48.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
48.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
48.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
48.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
48.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
48.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
48.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
48.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
48.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
48.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
48.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
48.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
48.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
48.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
48.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
48.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
47.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
47.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
47.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
47.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
47.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
47.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
46.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
46.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
46.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
46.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
46.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
46.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
45.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
45.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
45.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
45.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
45.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
45.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
45.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
44.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
44.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
44.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
44.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
43.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
43.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
43.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
43.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
42.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
42.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
42.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
42.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
42.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
42.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
42.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
41.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
41.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
41.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
41.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
41.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
41.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
41.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
40.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
40.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
40.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
40.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
40.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
40.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
40.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
40.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
40.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
40.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
40.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
40.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
39.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
39.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
39.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
39.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
39.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
39.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
39.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
39.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
39.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
39.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
39.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
39.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
38.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
38.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
38.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
38.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
38.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
38.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
38.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
38.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
37.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
37.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
37.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
37.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
37.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
37.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
37.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
37.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
37.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
37.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
37.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
37.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
36.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
36.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
36.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
36.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
36.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
36.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
36.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
36.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
36.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
36.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
36.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
36.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
36.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
35.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
35.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
35.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
35.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
35.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
34.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
34.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
34.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
34.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
34.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
34.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
34.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
34.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
34.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
34.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
34.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
34.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
33.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
33.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
33.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
33.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
33.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
33.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
33.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
32.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
32.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
32.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
31.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
31.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
31.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
31.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
31.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
31.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
31.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
31.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
31.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
31.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
30.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
30.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
30.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
30.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
30.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
30.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
30.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
30.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
30.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
30.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
29.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
29.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
29.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
29.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
29.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
28.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
28.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
28.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
27.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
27.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
27.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
27.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
27.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
27.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
27.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
27.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
27.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
26.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
26.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
26.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
26.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
26.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
26.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
25.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
25.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
25.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
25.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
25.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
25.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
24.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
24.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
24.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
24.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
24.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
24.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
24.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
23.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
23.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
23.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
22.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
21.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
21.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
20.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
20.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
20.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
19.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
19.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
18.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
18.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
18.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
17.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
17.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
16.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
16.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
15.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
14.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ZMAT2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
53.9
Number of samples
231
Samples
Sample
Description
TPM
DO45133
0 years, male, NA, stage:3, dead, 660 days
133.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
126.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
124.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
122.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
121.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
118.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
110.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
105.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
104.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
102.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
100.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
100.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
96.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
94.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
92.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
92.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
92.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
91.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
89.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
89.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
88.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
87.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
87.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
86.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
85.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
85.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
84.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
81.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
79.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
78.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
78.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
78.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
78.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
77.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
76.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
74.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
72.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
72.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
72.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
72.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
72.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
71.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
69.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
69.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
69.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
68.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
68.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
67.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
66.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
66.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
66.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
65.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
65.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
65.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
64.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
64.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
64.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
63.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
63.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
63.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
63.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
63.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
62.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
62.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
62.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
62.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
61.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
61.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
61.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
61.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
60.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
60.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
60.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
60.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
60.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
60.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
60.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
59.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
59.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
59.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
59.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
59.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
59.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
59.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
59.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
57.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
57.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
57.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
57.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
57.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
57.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
56.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
56.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
56.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
55.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
55.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
55.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
55.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
54.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
54.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
54.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
54.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
54.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
54.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
53.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
52.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
52.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
52.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
52.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
51.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
50.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
50.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
49.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
49.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
49.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
48.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
48.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
48.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
47.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
47.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
47.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
47.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
46.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
46.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
46.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
46.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
46.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
45.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
45.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
45.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
45.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
45.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
45.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
45.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
45.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
44.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
44.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
44.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
44.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
44.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
44.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
44.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
43.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
43.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
43.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
43.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
43.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
43.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
42.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
42.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
42.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
42.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
42.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
42.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
42.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
42.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
41.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
41.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
41.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
41.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
41.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
41.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
41.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
40.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
40.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
40.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
40.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
39.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
39.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
39.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
39.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
39.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
39.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
38.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
38.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
38.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
38.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
38.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
37.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
37.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
37.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
37.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
36.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
36.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
36.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
35.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
35.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
35.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
35.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
35.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
34.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
34.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
34.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
34.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
34.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
33.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
33.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
33.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
32.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
32.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
31.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
30.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
30.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
29.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
29.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
29.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
29.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
29.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
28.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
28.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
27.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
26.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
26.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
26.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
26.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
26.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
26.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
25.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
25.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
23.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
23.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
23.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
22.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
22.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
21.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
21.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
19.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
18.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
16.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
16.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
15.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
965
Tumor
1.5
497
Tumor
1.2
951
Tumor
1.1
355
Tumor
1.0
523
Tumor
1.0
695
Tumor
1.0
1021
Tumor
1.0
967
Tumor
0.9
487
Tumor
0.9
473
Tumor
0.9
533
Tumor
0.8
977
Tumor
0.8
957
Tumor
0.8
975
Tumor
0.8
923
Tumor
0.7
537
Tumor
0.7
1031
Tumor
0.7
517
Tumor
0.7
777
Tumor
0.6
883
Tumor
0.6
1013
Tumor
0.6
937
Tumor
0.6
545
Tumor
0.6
925
Tumor
0.6
823
Tumor
0.6
411
Tumor
0.6
553
Tumor
0.6
311
Tumor
0.6
513
Tumor
0.6
963
Tumor
0.6
817
Tumor
0.5
921
Tumor
0.5
943
Tumor
0.5
493
Tumor
0.5
211
Tumor
0.5
715
Tumor
0.5
527
Tumor
0.5
525
Tumor
0.5
737
Tumor
0.5
483
Tumor
0.5
491
Tumor
0.5
1045
Tumor
0.5
1041
Tumor
0.4
515
Tumor
0.4
535
Tumor
0.4
471
Tumor
0.4
785
Tumor
0.4
953
Tumor
0.4
431
Tumor
0.4
881
Tumor
0.4
285
Tumor
0.4
1025
Tumor
0.4
415
Tumor
0.4
915
Tumor
0.4
297
Tumor
0.4
647
Tumor
0.4
852
Normal
0.4
913
Tumor
0.3
425
Tumor
0.3
617
Tumor
0.3
727
Tumor
0.3
861
Tumor
0.3
447
Tumor
0.3
755
Tumor
0.3
524
Normal
0.3
743
Tumor
0.3
685
Tumor
0.3
924
Normal
0.3
911
Tumor
0.3
916
Normal
0.3
641
Tumor
0.3
814
Normal
0.3
353
Tumor
0.3
922
Normal
0.3
867
Tumor
0.3
918
Normal
0.3
724
Normal
0.3
857
Tumor
0.3
478
Normal
0.2
385
Tumor
0.2
1027
Tumor
0.2
146
Normal
0.2
536
Normal
0.2
516
Normal
0.2
983
Tumor
0.2
635
Tumor
0.2
865
Tumor
0.2
363
Tumor
0.2
492
Normal
0.2
917
Tumor
0.2
142
Normal
0.2
187
Tumor
0.2
721
Tumor
0.2
137
Tumor
0.2
477
Tumor
0.2
884
Normal
0.2
351
Tumor
0.2
563
Tumor
0.2
213
Tumor
0.2
615
Tumor
0.2
952
Normal
0.2
873
Tumor
0.2
455
Tumor
0.2
877
Tumor
0.2
954
Normal
0.1
863
Tumor
0.1
461
Tumor
0.1
912
Normal
0.1
481
Tumor
0.1
741
Tumor
0.1
981
Tumor
0.1
723
Tumor
0.1
862
Normal
0.1
538
Normal
0.1
131
Tumor
0.1
467
Tumor
0.1
813
Tumor
0.1
955
Tumor
0.1
697
Tumor
0.1
874
Normal
0.1
966
Normal
0.1
498
Normal
0.1
445
Tumor
0.1
866
Normal
0.1
778
Normal
0.1
192
Normal
0.1
223
Tumor
0.1
444
Normal
0.1
331
Tumor
0.1
882
Normal
0.1
878
Normal
0.1
433
Tumor
0.1
141
Tumor
0.1
984
Normal
0.1
341
Tumor
0.1
484
Normal
0.1
185
Tumor
0.1
616
Normal
0.1
554
Normal
0.1
815
Tumor
0.0
744
Normal
0.0
716
Normal
0.0
413
Tumor
0.0
514
Normal
0.0
958
Normal
0.0
518
Normal
0.0
816
Normal
0.0
824
Normal
0.0
434
Normal
0.0
746
Normal
0.0
328
Normal
0.0
277
Tumor
0.0
212
Normal
0.0
742
Normal
0.0
261
Tumor
0.0
224
Normal
0.0
1044
Normal
0.0
412
Normal
0.0
1026
Normal
0.0
494
Normal
0.0
786
Normal
0.0
868
Normal
0.0
938
Normal
0.0
488
Normal
0.0
982
Normal
0.0
546
Normal
0.0
968
Normal
0.0
728
Normal
0.0
327
Tumor
0.0
818
Normal
0.0
1022
Normal
0.0
756
Normal
0.0
926
Normal
0.0
472
Normal
0.0
427
Tumor
0.0
364
Normal
0.0
534
Normal
0.0
696
Normal
0.0
132
Normal
0.0
528
Normal
0.0
383
Tumor
0.0
191
Tumor
0.0
1032
Normal
0.0
421
Tumor
0.0
387
Tumor
0.0
686
Normal
0.0
465
Tumor
0.0
738
Normal
0.0
435
Tumor
0.0
978
Normal
-0.1
661
Tumor
-0.1
1043
Tumor
-0.1
161
Tumor
-0.1
283
Tumor
-0.1
357
Tumor
-0.1
395
Tumor
-0.1
714
Normal
-0.1
698
Normal
-0.1
864
Normal
-0.1
1028
Normal
-0.1
526
Normal
-0.1
964
Normal
-0.1
1042
Normal
-0.1
572
Normal
-0.1
858
Normal
-0.1
851
Tumor
-0.1
558
Normal
-0.1
145
Tumor
-0.1
221
Tumor
-0.1
944
Normal
-0.1
416
Normal
-0.1
474
Normal
-0.1
362
Normal
-0.1
356
Normal
-0.1
227
Tumor
-0.1
466
Normal
-0.1
745
Tumor
-0.1
384
Normal
-0.1
628
Normal
-0.1
1015
Tumor
-0.1
284
Normal
-0.1
448
Normal
-0.1
257
Tumor
-0.1
332
Normal
-0.2
228
Normal
-0.2
127
Tumor
-0.2
135
Tumor
-0.2
557
Tumor
-0.2
665
Tumor
-0.2
375
Tumor
-0.2
462
Normal
-0.2
482
Normal
-0.2
217
Tumor
-0.2
352
Normal
-0.2
313
Tumor
-0.2
113
Tumor
-0.2
443
Tumor
-0.2
267
Tumor
-0.2
436
Normal
-0.2
432
Normal
-0.2
1014
Normal
-0.2
423
Tumor
-0.2
195
Tumor
-0.2
314
Normal
-0.3
344
Normal
-0.3
312
Normal
-0.3
123
Tumor
-0.3
298
Normal
-0.3
713
Tumor
-0.3
214
Normal
-0.3
196
Normal
-0.3
451
Tumor
-0.3
976
Normal
-0.3
574
Normal
-0.3
268
Normal
-0.3
271
Tumor
-0.3
627
Tumor
-0.3
914
Normal
-0.3
126
Normal
-0.3
278
Normal
-0.3
463
Tumor
-0.3
138
Normal
-0.3
342
Normal
-0.3
446
Normal
-0.3
286
Normal
-0.3
136
Normal
-0.3
124
Normal
-0.3
1046
Normal
-0.4
636
Normal
-0.4
365
Tumor
-0.4
171
Tumor
-0.4
956
Normal
-0.4
414
Normal
-0.4
128
Normal
-0.4
147
Tumor
-0.4
468
Normal
-0.4
663
Tumor
-0.4
424
Normal
-0.4
218
Normal
-0.4
262
Normal
-0.4
112
Tumor
-0.4
354
Normal
-0.4
573
Tumor
-0.4
1016
Normal
-0.4
672
Normal
-0.4
188
Normal
-0.4
148
Normal
-0.4
456
Normal
-0.4
111
Normal
-0.4
568
Normal
-0.4
564
Normal
-0.4
361
Tumor
-0.4
386
Normal
-0.4
722
Normal
-0.5
391
Tumor
-0.5
664
Normal
-0.5
114
Normal
-0.5
376
Normal
-0.5
422
Normal
-0.5
428
Normal
-0.5
426
Normal
-0.5
662
Normal
-0.5
671
Tumor
-0.5
567
Tumor
-0.5
618
Normal
-0.5
232
Normal
-0.5
452
Normal
-0.5
231
Tumor
-0.5
366
Normal
-0.5
222
Normal
-0.5
162
Normal
-0.6
272
Normal
-0.6
394
Normal
-0.6
392
Normal
-0.6
571
Tumor
-0.6
648
Normal
-0.6
393
Tumor
-0.6
186
Normal
-0.6
358
Normal
-0.6
666
Normal
-0.6
367
Tumor
-0.6
464
Normal
-0.6
388
Normal
-0.6
396
Normal
-0.6
642
Normal
-0.6
343
Tumor
-0.7
172
Normal
-0.7
125
Tumor
-0.7
368
Normal
-0.7
258
Normal
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
