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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
BTF3 is not prognostic in Ovary Serous Cystadenocarcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
545.8
Number of samples
349
Samples
Sample
Description
TPM
TCGA-61-2092-01A
0 years, female, white, stage:Stage IIIC, alive, 1573 days
2315.4
TCGA-25-2393-01A
0 years, female, white, stage:Stage IIIC, dead, 1157 days
1768.3
TCGA-25-1316-01A
0 years, female, white, stage:Stage IIIC, dead, 1279 days
1541.9
TCGA-24-1471-01A
0 years, female, white, stage:Stage IIIC, alive, 36 days
1458.7
TCGA-09-1673-01A
0 years, female, white, stage:Stage IV, alive, 92 days
1371.0
TCGA-25-1632-01A
0 years, female, white, stage:Stage IV, dead, 1799 days
1335.1
TCGA-24-2024-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1769 days
1197.1
TCGA-61-2110-01A
0 years, female, white, stage:Stage IIIC, dead, 1354 days
1157.1
TCGA-24-1413-01A
0 years, female, white, stage:Stage IIIC, alive, 192 days
1099.0
TCGA-61-1721-01A
0 years, female, white, stage:Stage IV, alive, 338 days
1085.5
TCGA-24-1560-01A
0 years, female, white, stage:Stage IIIC, dead, 1341 days
1076.2
TCGA-24-0966-01A
0 years, female, black or african american, stage:Stage IIIC, alive, 232 days
1075.3
TCGA-24-1562-01A
0 years, female, white, stage:Stage IIIC, dead, 1384 days
1071.7
TCGA-13-0883-01A
0 years, female, white, stage:Stage IIIC, dead, 2097 days
1060.4
TCGA-61-2000-01A
0 years, female, white, stage:Stage IIIC, alive, 441 days
1058.1
TCGA-09-2048-01A
0 years, female, white, stage:Stage IIIC, dead, 138 days
1048.2
TCGA-36-1577-01A
0 years, female, asian, stage:Stage IIC, alive, 783 days
1044.1
TCGA-29-1785-01A
0 years, female, white, stage:Stage IIIC, dead, 1104 days
1034.9
TCGA-29-1690-01A
0 years, female, white, stage:Stage IIIC, dead, 1448 days
1032.6
TCGA-29-1703-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1815 days
1026.5
TCGA-24-2038-01A
0 years, female, white, stage:Stage IIIA, dead, 1354 days
1024.1
TCGA-24-1603-01A
0 years, female, white, stage:Stage IIIB, dead, 2742 days
1017.2
TCGA-30-1892-01A
0 years, female, white, stage:Stage IIIC, dead, 1484 days
1012.5
TCGA-04-1514-01A
0 years, female, white, stage:Stage IIIA, dead, 1720 days
1002.7
TCGA-57-1583-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 346 days
1001.3
TCGA-36-1570-01A
0 years, female, white, stage:Stage IIIC, alive, 655 days
985.7
TCGA-36-1574-01A
0 years, female, asian, stage:Stage IIIC, alive, 686 days
982.7
TCGA-25-1328-01A
0 years, female, white, stage:Stage IIIC, dead, 2009 days
974.0
TCGA-13-1506-01A
0 years, female, white, stage:Stage IIIC, dead, 1039 days
956.2
TCGA-59-2350-01A
0 years, female, stage:Stage IV, dead, 679 days
949.4
TCGA-59-2354-01A
0 years, female, white, stage:Stage IIIC, dead, 1046 days
919.4
TCGA-23-1111-01A
0 years, female, white, stage:Stage IIIC, alive, 98 days
918.3
TCGA-36-1571-01A
0 years, female, white, stage:Stage IIIB, dead, 695 days
909.6
TCGA-24-1544-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 820 days
908.4
TCGA-13-1487-01A
0 years, female, white, stage:Stage IV, dead, 681 days
906.4
TCGA-31-1944-01A
0 years, female, white, stage:Stage IIIC, alive, 1386 days
902.1
TCGA-24-1842-01A
0 years, female, white, stage:Stage IIIC, alive, 253 days
885.2
TCGA-24-1563-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1451 days
884.3
TCGA-61-1910-01A
0 years, female, white, stage:Stage IIC, alive, 1127 days
880.8
TCGA-04-1364-01A
0 years, female, white, stage:Stage IIIC, dead, 1024 days
866.0
TCGA-61-1995-01A
0 years, female, white, stage:Stage IIIC, alive, 61 days
859.3
TCGA-30-1853-01A
0 years, female, white, stage:Stage IIIC, dead, 1103 days
855.2
TCGA-29-1693-01A
0 years, female, white, stage:Stage IIIC, alive, 3096 days
855.1
TCGA-24-1844-01A
0 years, female, white, stage:Stage IIIC, alive, 113 days
823.9
TCGA-13-1511-01A
0 years, female, asian, stage:Stage IV, dead, 1650 days
816.6
TCGA-09-2051-01A
0 years, female, white, stage:Stage IIIC, alive, 1919 days
816.5
TCGA-30-1860-01A
0 years, female, white, stage:Stage IIIC, dead, 1366 days
809.3
TCGA-25-2399-01A
0 years, female, white, stage:Stage IIIC, dead, 608 days
807.7
TCGA-29-2414-01A
0 years, female, white, stage:Stage IIIC, dead, 2621 days
806.9
TCGA-30-1714-01A
0 years, female, white, stage:Stage IV, dead, 1158 days
798.3
TCGA-36-1568-01A
0 years, female, stage:Stage IIIC, alive, 875 days
797.4
TCGA-24-1474-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 676 days
781.0
TCGA-13-1495-01A
0 years, female, white, stage:Stage IIIC, dead, 2749 days
780.3
TCGA-59-2355-01A
0 years, female, white, stage:Stage IV, dead, 65 days
762.7
TCGA-57-1993-01A
0 years, female, white, stage:Stage IIIC, alive, 763 days
759.6
TCGA-04-1655-01A
0 years, female, white, stage:Stage IIIB, dead, 1380 days
759.2
TCGA-24-1551-01A
0 years, female, white, stage:Stage IIIC, dead, 1579 days
759.1
TCGA-61-2009-01A
0 years, female, white, stage:Stage IIIC, alive, 1212 days
750.8
TCGA-36-1580-01A
0 years, female, stage:Stage IIIC, dead, 737 days
746.0
TCGA-61-1725-01A
0 years, female, white, stage:Stage IIIC, alive, 956 days
740.8
TCGA-24-1565-01A
0 years, female, white, stage:Stage IIIC, dead, 312 days
737.5
TCGA-29-1761-01A
0 years, female, asian, stage:Stage IIIC, dead, 528 days
736.7
TCGA-61-2098-01A
0 years, female, white, stage:Stage IIIC, alive, 1993 days
732.8
TCGA-13-1483-01A
0 years, female, white, stage:Stage IIIC, dead, 895 days
729.9
TCGA-10-0927-01A
0 years, female, stage:Stage IIIC, dead, 2490 days
728.9
TCGA-29-1766-01A
0 years, female, white, stage:Stage IIIC, dead, 1199 days
718.5
TCGA-04-1343-01A
0 years, female, white, stage:Stage IV, dead, 361 days
692.9
TCGA-24-1469-01A
0 years, female, white, stage:Stage IIIC, alive, 277 days
689.1
TCGA-61-1738-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1089 days
688.0
TCGA-61-1733-01A
0 years, female, white, stage:Stage IIIC, alive, 967 days
687.6
TCGA-13-0800-01A
0 years, female, white, stage:Stage IIIC, alive, 2661 days
687.3
TCGA-25-1633-01A
0 years, female, white, stage:Stage IIIC, dead, 1891 days
684.8
TCGA-WR-A838-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 304 days
680.6
TCGA-23-1116-01A
0 years, female, white, stage:Stage IIIC, dead, 592 days
679.4
TCGA-61-2008-01A
0 years, female, asian, stage:Stage IIC, alive, 932 days
678.5
TCGA-25-1627-01A
0 years, female, white, stage:Stage IIIC, dead, 394 days
675.9
TCGA-24-1418-01A
0 years, female, white, stage:Stage IIIC, alive, 243 days
674.3
TCGA-29-1774-01A
0 years, female, white, stage:Stage IIIC, alive, 527 days
673.7
TCGA-29-1781-01A
0 years, female, white, stage:Stage IIIC, alive, 255 days
668.9
TCGA-23-1110-01A
0 years, female, white, stage:Stage IIIC, alive, 1658 days
668.8
TCGA-13-1498-01A
0 years, female, white, stage:Stage IIIC, dead, 2012 days
663.8
TCGA-25-1329-01A
0 years, female, white, stage:Stage IIIC, dead, 457 days
660.4
TCGA-04-1362-01A
0 years, female, white, stage:Stage IIC, dead, 1348 days
657.3
TCGA-09-0367-01A
0 years, female, native hawaiian or other pacific islander, stage:Stage IIIC, dead, 547 days
656.4
TCGA-09-1666-01A
0 years, female, white, stage:Stage IIIC, alive, 1752 days
649.8
TCGA-24-1416-01A
0 years, female, white, stage:Stage IV, alive, 194 days
648.9
TCGA-24-1434-01A
0 years, female, white, stage:Stage IIIC, dead, 568 days
648.0
TCGA-24-1552-01A
0 years, female, white, stage:Stage IIIC, dead, 1259 days
643.0
TCGA-24-1557-01A
0 years, female, white, stage:Stage IIIC, dead, 1213 days
641.2
TCGA-36-1569-01A
0 years, female, white, stage:Stage IIIC, alive, 885 days
639.4
TCGA-13-1496-01A
0 years, female, white, stage:Stage IIIC, dead, 129 days
638.5
TCGA-25-1319-01A
0 years, female, white, stage:Stage IIIC, dead, 1977 days
638.3
TCGA-24-0982-01A
0 years, female, white, stage:Stage IIIC, dead, 679 days
634.4
TCGA-09-0364-01A
0 years, female, white, stage:Stage IIC, dead, 887 days
629.2
TCGA-5X-AA5U-01A
0 years, female, black or african american, stage:Stage IIC, alive, 361 days
623.2
TCGA-31-1953-01A
0 years, female, asian, stage:Stage IIIC, alive, 204 days
621.6
TCGA-29-2425-01A
0 years, female, white, stage:Stage IIIC, alive, 1977 days
619.8
TCGA-13-0887-01A
0 years, female, white, stage:Stage IIIC, dead, 2028 days
619.0
TCGA-23-1030-01A
0 years, female, white, stage:Stage IIIC, alive, 886 days
615.6
TCGA-24-1426-01A
0 years, female, white, stage:Stage IIIC, alive, 163 days
612.4
TCGA-23-2084-01A
0 years, female, white, stage:Stage IV, dead, 1516 days
612.1
TCGA-24-1422-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 23 days
605.4
TCGA-59-2363-01A
0 years, female, asian, stage:Stage IIIA, alive, 165 days
601.0
TCGA-13-0768-01A
0 years, female, white, stage:Stage IIIC, dead, 1784 days
600.0
TCGA-30-1891-01A
0 years, female, white, stage:Stage IIIC, dead, 914 days
599.6
TCGA-24-0968-01A
0 years, female, white, stage:Stage IIIC, dead, 598 days
599.3
TCGA-24-2280-01A
0 years, female, white, stage:Stage IIIC, alive, 2143 days
593.0
TCGA-61-1907-01A
0 years, female, white, stage:Stage IIIC, alive, 952 days
591.9
TCGA-24-2036-01A
0 years, female, white, stage:Stage IIIA, dead, 1947 days
590.8
TCGA-61-2102-01A
0 years, female, white, stage:Stage IIIC, dead, 197 days
589.5
TCGA-25-1870-01A
0 years, female, white, stage:Stage IIIC, dead, 455 days
585.6
TCGA-29-1696-01A
0 years, female, white, stage:Stage IIIC, dead, 1032 days
580.0
TCGA-23-1120-01A
0 years, female, white, stage:Stage IIIC, alive, 130 days
579.2
TCGA-24-1417-01A
0 years, female, white, stage:Stage IV, alive, 238 days
577.5
TCGA-31-1951-01A
0 years, female, white, stage:Stage IIIC, alive, 684 days
573.7
TCGA-25-1631-01A
0 years, female, white, stage:Stage IIIC, dead, 9 days
573.5
TCGA-13-1489-01A
0 years, female, white, stage:Stage IIIC, dead, 2553 days
573.4
TCGA-25-2396-01A
0 years, female, white, stage:Stage IIIC, dead, 92 days
569.9
TCGA-29-1705-01A
0 years, female, white, stage:Stage IIIC, dead, 555 days
569.4
TCGA-13-1507-01A
0 years, female, white, stage:Stage IIIC, dead, 1993 days
568.5
TCGA-23-1809-01A
0 years, female, white, stage:Stage IIC, alive, 16 days
568.5
TCGA-25-2404-01A
0 years, female, american indian or alaska native, stage:Stage IIIC, dead, 883 days
563.1
TCGA-09-1669-01A
0 years, female, white, stage:Stage IIIA, alive, 928 days
561.4
TCGA-09-0369-01A
0 years, female, white, stage:Stage IIIC, dead, 1082 days
559.1
TCGA-23-1028-01A
0 years, female, white, stage:Stage IIIC, alive, 1503 days
554.8
TCGA-61-2003-01A
0 years, female, white, stage:Stage IIIC, alive, 122 days
554.7
TCGA-09-2054-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 637 days
554.1
TCGA-61-1900-01A
0 years, female, black or african american, stage:Stage IIIB, alive, 176 days
553.8
TCGA-20-1683-01A
0 years, female, white, stage:Stage IIIC, alive, 772 days
553.4
TCGA-29-1768-01A
0 years, female, white, stage:Stage IV, dead, 952 days
552.7
TCGA-24-1843-01A
0 years, female, white, stage:Stage IIIC, alive, 106 days
550.4
TCGA-09-1662-01A
0 years, female, white, stage:Stage IV, dead, 2717 days
548.8
TCGA-13-1409-01A
0 years, female, white, stage:Stage IIIC, dead, 1742 days
546.4
TCGA-09-1670-01A
0 years, female, white, stage:Stage IIIA, alive, 547 days
544.7
TCGA-29-1763-01A
0 years, female, black or african american, stage:Stage IIC, alive, 2032 days
542.2
TCGA-24-2281-01A
0 years, female, white, stage:Stage IIA, alive, 1357 days
541.4
TCGA-09-0366-01A
0 years, female, white, stage:Stage IIIC, dead, 1757 days
541.2
TCGA-30-1862-01A
0 years, female, white, stage:Stage IV, dead, 186 days
539.9
TCGA-25-1628-01A
0 years, female, white, stage:Stage IIIC, dead, 627 days
536.4
TCGA-29-1784-01A
0 years, female, white, stage:Stage IIIC, alive, 163 days
534.3
TCGA-61-2002-01A
0 years, female, white, stage:Stage IIIC, alive, 547 days
534.0
TCGA-24-2033-01A
0 years, female, white, stage:Stage IIIC, dead, 562 days
533.7
TCGA-25-1630-01A
0 years, female, white, stage:Stage IIIC, dead, 1162 days
533.3
TCGA-24-0979-01A
0 years, female, white, stage:Stage IV, dead, 1264 days
525.8
TCGA-04-1341-01A
0 years, female, white, stage:'--, alive, 33 days
525.8
TCGA-61-1911-01A
0 years, female, white, stage:Stage IIA, alive, 1293 days
525.5
TCGA-61-1724-01A
0 years, female, white, stage:Stage IIIC, dead, 637 days
525.1
TCGA-10-0938-01A
0 years, female, white, stage:Stage IIIC, dead, 636 days
522.2
TCGA-29-1777-01A
0 years, female, white, stage:Stage IIIC, alive, 374 days
521.9
TCGA-23-1118-01A
0 years, female, white, stage:Stage IIIC, alive, 2616 days
519.2
TCGA-29-1762-01A
0 years, female, white, stage:Stage IV, dead, 2634 days
516.3
TCGA-24-1846-01A
0 years, female, stage:Stage IIIC, alive, 133 days
515.3
TCGA-29-2428-01A
0 years, female, white, stage:Stage IIIC, alive, 1372 days
513.8
TCGA-61-1728-01A
0 years, female, white, stage:Stage IV, alive, 848 days
512.3
TCGA-04-1519-01A
0 years, female, stage:Stage IIIC, alive, 24 days
512.0
TCGA-25-1634-01A
0 years, female, white, stage:Stage IIIC, dead, 1091 days
510.8
TCGA-25-1317-01A
0 years, female, white, stage:Stage IIIC, dead, 61 days
510.6
TCGA-24-1847-01A
0 years, female, white, stage:Stage IV, alive, 343 days
510.3
TCGA-04-1347-01A
0 years, female, white, stage:Stage IV, alive, 1919 days
510.3
TCGA-24-1467-01A
0 years, female, white, stage:Stage IIIC, dead, 3224 days
510.2
TCGA-57-1586-01A
0 years, female, white, stage:Stage IIIC, alive, 679 days
509.2
TCGA-25-1635-01A
0 years, female, white, stage:Stage IIIC, dead, 1583 days
509.1
TCGA-24-1464-01A
0 years, female, white, stage:Stage IIIC, dead, 379 days
507.7
TCGA-57-1584-01A
0 years, female, white, stage:Stage IIIC, alive, 643 days
502.6
TCGA-61-2097-01A
0 years, female, white, stage:Stage IIC, alive, 1844 days
499.1
TCGA-29-1776-01A
0 years, female, black or african american, stage:Stage IIIC, alive, 360 days
498.9
TCGA-24-1549-01A
0 years, female, white, stage:Stage IIIB, dead, 1721 days
495.5
TCGA-24-1923-01A
0 years, female, white, stage:Stage IIIC, dead, 690 days
494.4
TCGA-61-2101-01A
0 years, female, white, stage:Stage IIIC, dead, 1688 days
489.4
TCGA-24-1845-01A
0 years, female, white, stage:Stage IIIC, alive, 116 days
487.7
TCGA-29-1710-01A
0 years, female, white, stage:Stage IIIC, dead, 951 days
487.5
TCGA-29-1701-01A
0 years, female, white, stage:Stage IIIC, dead, 515 days
485.9
TCGA-25-1320-01A
0 years, female, white, stage:Stage IIIC, dead, 1155 days
485.3
TCGA-61-1737-01A
0 years, female, white, stage:Stage IV, alive, 1364 days
482.4
TCGA-24-2023-01A
0 years, female, white, stage:Stage IIIA, dead, 1364 days
480.8
TCGA-10-0928-01A
0 years, female, white, stage:Stage IIIC, dead, 563 days
480.3
TCGA-23-1027-01A
0 years, female, white, stage:Stage IIIC, dead, 976 days
479.9
TCGA-13-1485-01A
0 years, female, white, stage:Stage IV, dead, 629 days
479.4
TCGA-30-1866-01A
0 years, female, white, stage:Stage IV, dead, 1114 days
478.7
TCGA-04-1350-01A
0 years, female, white, stage:Stage IIIC, dead, 1946 days
478.2
TCGA-23-1107-01A
0 years, female, white, stage:Stage IV, dead, 9 days
477.5
TCGA-29-1691-01A
0 years, female, white, stage:Stage IIIC, dead, 1470 days
476.4
TCGA-24-1550-01A
0 years, female, white, stage:Stage IIIC, dead, 1249 days
475.8
TCGA-24-1105-01A
0 years, female, white, stage:Stage IIIC, dead, 1442 days
474.5
TCGA-13-1404-01A
0 years, female, white, stage:Stage IIIC, alive, 2469 days
472.9
TCGA-61-1998-01A
0 years, female, white, stage:Stage IIIC, alive, 168 days
470.8
TCGA-29-1783-01A
0 years, female, white, stage:Stage IIIC, alive, 220 days
470.4
TCGA-29-1694-01A
0 years, female, white, stage:Stage IIIC, dead, 1187 days
469.1
TCGA-29-1769-01A
0 years, female, white, stage:Stage IIIC, alive, 699 days
469.0
TCGA-23-1109-01A
0 years, female, white, stage:Stage IIIC, dead, 1562 days
468.2
TCGA-25-2400-01A
0 years, female, white, stage:Stage IIIC, dead, 1278 days
467.5
TCGA-25-2401-01A
0 years, female, white, stage:Stage IIIC, dead, 90 days
464.6
TCGA-13-1505-01A
0 years, female, white, stage:Stage IIIC, alive, 1998 days
463.7
TCGA-13-0762-01A
0 years, female, white, stage:Stage IIIC, alive, 3400 days
463.5
TCGA-29-1697-01A
0 years, female, white, stage:Stage IIIC, dead, 949 days
463.4
TCGA-23-2078-01A
0 years, female, white, stage:Stage IIIC, alive, 2661 days
458.1
TCGA-25-1315-01A
0 years, female, white, stage:Stage IIIC, dead, 1583 days
456.8
TCGA-61-1919-01A
0 years, female, white, stage:Stage IIIC, dead, 1161 days
456.2
TCGA-25-1877-01A
0 years, female, white, stage:Stage IIIC, dead, 730 days
453.6
TCGA-13-1510-01A
0 years, female, white, stage:Stage IIIC, dead, 1359 days
451.6
TCGA-23-1024-01A
0 years, female, white, stage:Stage IV, alive, 468 days
451.0
TCGA-24-1430-01A
0 years, female, white, stage:Stage IIIC, dead, 863 days
449.2
TCGA-24-2020-01A
0 years, female, white, stage:Stage IIIC, dead, 4624 days
448.9
TCGA-24-2027-01A
0 years, female, white, stage:Stage IV, dead, 3337 days
446.6
TCGA-13-0924-01A
0 years, female, white, stage:Stage IV, alive, 2614 days
443.2
TCGA-61-2111-01A
0 years, female, white, stage:Stage IV, alive, 3825 days
443.1
TCGA-24-1435-01A
0 years, female, white, stage:Stage IIIC, dead, 1324 days
439.0
TCGA-61-2109-01A
0 years, female, white, stage:Stage IIIC, dead, 629 days
438.4
TCGA-23-1113-01A
0 years, female, white, stage:Stage IV, dead, 949 days
438.4
TCGA-04-1542-01A
0 years, female, white, stage:Stage IIIB, dead, 2561 days
437.3
TCGA-29-1770-01A
0 years, female, white, stage:Stage IIIC, alive, 741 days
434.8
TCGA-25-1623-01A
0 years, female, white, stage:Stage IV, dead, 565 days
432.1
TCGA-24-1567-01A
0 years, female, white, stage:Stage IIIB, dead, 524 days
431.3
TCGA-04-1530-01A
0 years, female, white, stage:Stage IIIC, dead, 3622 days
429.3
TCGA-25-1321-01A
0 years, female, white, stage:Stage IIIC, dead, 1033 days
429.2
TCGA-23-2077-01A
0 years, female, white, stage:Stage IIIC, alive, 3525 days
428.6
TCGA-24-2290-01A
0 years, female, white, stage:Stage IIIC, dead, 1102 days
427.7
TCGA-13-0897-01A
0 years, female, white, stage:Stage IIIC, dead, 2182 days
426.6
TCGA-24-2293-01A
0 years, female, white, stage:'--, dead, 506 days
426.0
TCGA-61-1918-01A
0 years, female, white, stage:Stage IV, dead, 479 days
425.8
TCGA-23-1122-01A
0 years, female, white, stage:Stage IIIC, dead, 1189 days
424.8
TCGA-31-1959-01A
0 years, female, white, stage:Stage IV, alive, 67 days
423.6
TCGA-24-2254-01A
0 years, female, white, stage:Stage IIIC, dead, 1736 days
423.3
TCGA-20-1682-01A
0 years, female, white, stage:Stage IIIC, alive, 837 days
422.1
TCGA-13-2060-01A
0 years, female, white, stage:Stage IV, alive, 2369 days
422.0
TCGA-24-2267-01A
0 years, female, white, stage:Stage IIB, dead, 1446 days
421.8
TCGA-25-2409-01A
0 years, female, white, stage:Stage IV, dead, 821 days
421.8
TCGA-31-1946-01A
0 years, female, stage:Stage IIIC, alive, 918 days
418.2
TCGA-13-0885-01A
0 years, female, white, stage:Stage IIIC, alive, 3388 days
417.3
TCGA-29-1695-01A
0 years, female, white, stage:Stage IIIC, dead, 1229 days
417.1
TCGA-25-2398-01A
0 years, female, white, stage:Stage IIIC, dead, 1369 days
416.9
TCGA-13-0730-01A
0 years, female, white, stage:Stage IIIC, dead, 542 days
416.4
TCGA-29-1688-01A
0 years, female, white, stage:Stage IIIC, dead, 2400 days
415.4
TCGA-25-1323-01A
0 years, female, white, stage:Stage IIIC, dead, 395 days
410.8
TCGA-25-2042-01A
0 years, female, american indian or alaska native, stage:Stage IIIC, dead, 396 days
408.1
TCGA-31-1956-01A
0 years, female, white, stage:Stage IIIB, alive, 1342 days
404.6
TCGA-24-1546-01A
0 years, female, white, stage:Stage IIIC, dead, 1955 days
402.2
TCGA-13-0726-01A
0 years, female, white, stage:Stage IIIC, dead, 949 days
401.6
TCGA-13-1407-01A
0 years, female, white, stage:Stage IIIC, alive, 2534 days
397.7
TCGA-13-0725-01A
0 years, female, white, stage:Stage IIIC, dead, 377 days
395.7
TCGA-24-1428-01A
0 years, female, white, stage:Stage IIIC, alive, 529 days
394.6
TCGA-20-1687-01A
0 years, female, white, stage:Stage IV, alive, 81 days
391.8
TCGA-13-0724-01A
0 years, female, white, stage:Stage IV, dead, 83 days
391.3
TCGA-61-1741-01A
0 years, female, white, stage:Stage IIIB, dead, 1024 days
390.6
TCGA-20-0987-01A
0 years, female, white, stage:Stage IIIC, dead, 701 days
389.9
TCGA-13-0727-01A
0 years, female, white, stage:Stage IIIC, dead, 462 days
389.6
TCGA-10-0937-01A
0 years, female, white, stage:Stage IIIC, dead, 608 days
389.1
TCGA-36-1576-01A
0 years, female, stage:Stage IIIC, alive, 915 days
388.8
TCGA-29-1778-01A
0 years, female, white, stage:Stage IIIC, alive, 454 days
388.6
TCGA-29-1711-01A
0 years, female, black or african american, stage:Stage IIIC, alive, 1053 days
388.3
TCGA-24-2288-01A
0 years, female, white, stage:Stage IIIC, dead, 25 days
385.2
TCGA-31-1950-01A
0 years, female, white, stage:Stage IIIC, alive, 571 days
383.0
TCGA-13-1477-01A
0 years, female, white, stage:Stage IV, dead, 1662 days
382.7
TCGA-20-0991-01A
0 years, female, white, stage:Stage IIB, alive, 797 days
382.6
TCGA-57-1582-01A
0 years, female, white, stage:Stage IIIC, dead, 731 days
381.7
TCGA-13-A5FT-01A
0 years, female, black or african american, stage:Stage IIIC, alive, 2143 days
381.6
TCGA-13-0906-01A
0 years, female, white, stage:Stage IIIC, alive, 3619 days
381.4
TCGA-24-1930-01A
0 years, female, white, stage:Stage IIIC, dead, 2467 days
379.2
TCGA-24-1103-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1646 days
379.0
TCGA-61-1914-01A
0 years, female, stage:Stage IIIC, alive, 1722 days
377.7
TCGA-24-1928-01A
0 years, female, white, stage:Stage IIIC, dead, 336 days
377.3
TCGA-61-2113-01A
0 years, female, white, stage:Stage IIC, dead, 676 days
376.7
TCGA-24-1553-01A
0 years, female, white, stage:Stage IIIB, dead, 1767 days
375.3
TCGA-13-1405-01A
0 years, female, white, stage:Stage IV, dead, 868 days
374.9
TCGA-13-0765-01A
0 years, female, white, stage:Stage IIIC, dead, 1389 days
373.6
TCGA-13-1411-01A
0 years, female, white, stage:Stage IIIC, dead, 531 days
373.3
TCGA-04-1365-01A
0 years, female, white, stage:Stage IIIB, alive, 947 days
370.0
TCGA-13-0916-01A
0 years, female, white, stage:Stage IIIC, alive, 1785 days
369.8
TCGA-13-1499-01A
0 years, female, white, stage:Stage IIIC, alive, 3500 days
369.2
TCGA-13-0804-01A
0 years, female, white, stage:Stage IIIC, dead, 1073 days
368.8
TCGA-29-A5NZ-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1088 days
368.2
TCGA-13-0888-01A
0 years, female, white, stage:Stage IIIC, dead, 2811 days
365.7
TCGA-13-0911-01A
0 years, female, white, stage:Stage IV, dead, 1355 days
365.2
TCGA-24-1427-01A
0 years, female, stage:Stage IIIC, alive, 147 days
363.8
TCGA-25-1312-01A
0 years, female, white, stage:Stage IV, dead, 31 days
360.7
TCGA-24-1419-01A
0 years, female, white, stage:Stage IIIC, alive, 239 days
359.3
TCGA-23-1022-01A
0 years, female, white, stage:Stage IIIC, dead, 1511 days
358.2
TCGA-24-2261-01A
0 years, female, white, stage:Stage IIIC, dead, 24 days
358.1
TCGA-13-0797-01A
0 years, female, white, stage:Stage IIIC, alive, 2121 days
355.0
TCGA-59-A5PD-01A
0 years, female, black or african american, stage:Stage IC, dead, 624 days
352.5
TCGA-13-0720-01A
0 years, female, white, stage:Stage IIIC, dead, 1355 days
352.0
TCGA-24-1424-01A
0 years, female, white, stage:Stage IIIC, alive, 183 days
352.0
TCGA-24-1425-01A
0 years, female, white, stage:Stage IIIC, alive, 181 days
350.5
TCGA-25-1626-01A
0 years, female, white, stage:Stage IIIC, dead, 518 days
350.4
TCGA-59-2348-01A
0 years, female, white, stage:Stage IIIC, alive, 5481 days
348.7
TCGA-04-1536-01A
0 years, female, black or african american, stage:Stage IV, dead, 885 days
348.3
TCGA-57-1585-01A
0 years, female, white, stage:Stage IIIC, dead, 53 days
344.5
TCGA-36-1581-01A
0 years, female, white, stage:Stage IIC, alive, 751 days
342.3
TCGA-25-1322-01A
0 years, female, white, stage:Stage IV, dead, 91 days
340.5
TCGA-24-2035-01A
0 years, female, white, stage:Stage IIIC, dead, 857 days
339.4
TCGA-13-0923-01A
0 years, female, white, stage:Stage IIIC, alive, 2547 days
337.9
TCGA-61-2012-01A
0 years, female, white, stage:Stage IIC, alive, 932 days
333.9
TCGA-23-1119-01A
0 years, female, white, stage:Stage IIIC, alive, 3953 days
333.2
TCGA-30-1861-01A
0 years, female, white, stage:Stage IIIC, dead, 1058 days
330.2
TCGA-04-1361-01A
0 years, female, white, stage:Stage IIIB, alive, 989 days
328.8
TCGA-13-0920-01A
0 years, female, white, stage:Stage IIIC, dead, 1484 days
328.3
TCGA-25-2392-01A
0 years, female, white, stage:Stage IV, dead, 31 days
326.0
TCGA-VG-A8LO-01A
0 years, female, black or african american, stage:Stage IV, dead, 24 days
325.6
TCGA-13-1408-01A
0 years, female, white, stage:Stage IIIC, dead, 1680 days
324.4
TCGA-24-1431-01A
0 years, female, white, stage:Stage IIIC, dead, 583 days
324.0
TCGA-24-2026-01A
0 years, female, white, stage:Stage IIIC, dead, 1059 days
323.7
TCGA-04-1356-01A
0 years, female, white, stage:Stage IIC, dead, 1499 days
322.6
TCGA-13-0795-01A
0 years, female, white, stage:Stage IIIC, dead, 619 days
319.4
TCGA-59-2352-01A
0 years, female, white, stage:Stage IIIC, dead, 286 days
317.8
TCGA-61-2104-01A
0 years, female, white, stage:Stage IIC, alive, 2338 days
314.2
TCGA-23-1023-01A
0 years, female, white, stage:Stage IIIC, alive, 1233 days
311.8
TCGA-57-1994-01A
0 years, female, white, stage:'--, alive, 761 days
310.7
TCGA-30-1857-01A
0 years, female, white, stage:Stage IV, dead, 8 days
310.2
TCGA-61-2088-01A
0 years, female, white, stage:Stage IIIC, alive, 145 days
309.9
TCGA-24-1604-01A
0 years, female, white, stage:Stage IIIC, dead, 2688 days
308.6
TCGA-29-2427-01A
0 years, female, white, stage:Stage IIIC, alive, 1900 days
305.7
TCGA-10-0931-01A
0 years, female, white, stage:Stage IIIC, dead, 1000 days
305.3
TCGA-13-1410-01A
0 years, female, white, stage:Stage IV, alive, 2464 days
301.4
TCGA-13-1403-01A
0 years, female, white, stage:Stage IIIC, dead, 2345 days
300.5
TCGA-09-2045-01A
0 years, female, asian, stage:Stage IV, dead, 1069 days
300.4
TCGA-13-0886-01A
0 years, female, white, stage:Stage IIIC, alive, 4665 days
299.1
TCGA-04-1331-01A
0 years, female, white, stage:Stage IIIC, dead, 1336 days
296.3
TCGA-13-0891-01A
0 years, female, white, stage:Stage IV, dead, 3128 days
295.6
TCGA-59-2351-01A
0 years, female, white, stage:Stage IIIC, alive, 3532 days
293.4
TCGA-13-1497-01A
0 years, female, white, stage:Stage IIIC, alive, 3871 days
289.7
TCGA-24-2298-01A
0 years, female, white, stage:Stage IIIC, dead, 1620 days
279.7
TCGA-25-1313-01A
0 years, female, white, stage:Stage IV, dead, 820 days
278.0
TCGA-24-2289-01A
0 years, female, white, stage:Stage IV, dead, 2049 days
277.6
TCGA-13-1512-01A
0 years, female, white, stage:Stage IIIC, alive, 442 days
274.5
TCGA-25-1326-01A
0 years, female, white, stage:Stage IIIC, dead, 1249 days
273.7
TCGA-OY-A56Q-01A
0 years, female, black or african american, stage:Stage IIA, alive, 576 days
272.3
TCGA-13-1509-01A
0 years, female, white, stage:Stage IV, alive, 2438 days
270.2
TCGA-04-1648-01A
0 years, female, white, stage:Stage IIIC, dead, 871 days
266.5
TCGA-04-1651-01A
0 years, female, white, stage:Stage IIIC, dead, 1102 days
263.0
TCGA-24-1423-01A
0 years, female, white, stage:Stage IIIC, alive, 190 days
262.6
TCGA-24-2297-01A
0 years, female, white, stage:Stage IIIC, dead, 1699 days
262.2
TCGA-30-1718-01A
0 years, female, white, stage:Stage IIIC, dead, 1579 days
250.2
TCGA-24-1924-01A
0 years, female, white, stage:Stage IIIC, dead, 919 days
248.9
TCGA-04-1332-01A
0 years, female, white, stage:Stage IIIC, dead, 1247 days
241.0
TCGA-04-1338-01A
0 years, female, white, stage:Stage IIIC, alive, 1418 days
237.8
TCGA-24-1850-01A
0 years, female, white, stage:Stage IIIC, alive, 168 days
237.4
TCGA-13-1501-01A
0 years, female, white, stage:Stage IV, dead, 1314 days
236.1
TCGA-24-1616-01A
0 years, female, white, stage:Stage IIIC, dead, 1163 days
230.7
TCGA-13-0766-01A
0 years, female, white, stage:Stage IIIC, dead, 1725 days
227.7
TCGA-25-1318-01A
0 years, female, white, stage:Stage IIIC, dead, 1064 days
223.9
TCGA-13-1492-01A
0 years, female, white, stage:Stage IIIC, dead, 3819 days
222.8
TCGA-24-2271-01A
0 years, female, asian, stage:Stage IIIC, dead, 962 days
222.8
TCGA-24-1104-01A
0 years, female, white, stage:Stage IV, dead, 1933 days
218.5
TCGA-23-1123-01A
0 years, female, white, stage:Stage IIIC, dead, 1018 days
213.3
TCGA-13-0714-01A
0 years, female, white, stage:Stage IV, dead, 189 days
207.5
TCGA-24-1558-01A
0 years, female, white, stage:Stage IIIC, dead, 594 days
202.4
TCGA-13-1488-01A
0 years, female, white, stage:Stage IV, dead, 2154 days
201.3
TCGA-20-1686-01A
0 years, female, white, stage:Stage IIIC, alive, 89 days
190.9
TCGA-10-0933-01A
0 years, female, white, stage:Stage IIIC, dead, 446 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
BTF3 is not prognostic in Ovary Serous Cystadenocarcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
553.7
Number of samples
81
Samples
Sample
Description
TPM
DO46384
0 years, female, NA, stage:III, dead, 614 days
1261.0
DO46370
0 years, female, NA, stage:III, dead, 1727 days
1036.8
DO46326
0 years, female, NA, stage:III, dead, 701 days
1011.3
DO46338
0 years, female, NA, stage:III, dead, 596 days
997.3
DO46591
0 years, female, NA, stage:III, dead, 195 days
976.9
DO46380
0 years, female, NA, stage:III, dead, 1423 days
974.3
DO46412
0 years, female, NA, stage:III, dead, 597 days
925.6
DO46581
0 years, female, NA, stage:III, dead, 408 days
923.0
DO46560
0 years, female, NA, stage:IV, dead, 286 days
885.4
DO46360
0 years, female, NA, stage:IV, dead, 1759 days
883.1
DO46394
0 years, female, NA, stage:IV, dead, 1039 days
843.1
DO46523
0 years, female, NA, stage:IV, alive, 1873 days
819.0
DO46368
0 years, female, NA, stage:III, dead, 2879 days
801.9
DO46364
0 years, female, NA, stage:III, dead, 806 days
794.6
DO46408
0 years, female, NA, stage:III, dead, 489 days
769.9
DO46402
0 years, female, NA, stage:III, dead, 511 days
762.6
DO46566
0 years, female, NA, stage:III, dead, 673 days
742.9
DO46463
0 years, female, NA, stage:III, dead, 2451 days
724.6
DO46374
0 years, female, NA, stage:III, dead, 1409 days
704.0
DO46398
0 years, female, NA, stage:III, alive, 437 days
688.2
DO46325
0 years, female, NA, stage:III, dead, 477 days
678.7
DO46586
0 years, female, NA, stage:III, dead, 1019 days
677.5
DO46334
0 years, female, NA, stage:III, dead, 496 days
658.0
DO46606
0 years, female, NA, stage:III, alive, 804 days
657.7
DO46390
0 years, female, NA, stage:III, dead, 374 days
654.6
DO46400
0 years, female, NA, stage:III, dead, 719 days
651.7
DO46568
0 years, female, NA, stage:III, dead, 320 days
638.7
DO46352
0 years, female, NA, stage:III, dead, 677 days
621.4
DO46588
0 years, female, NA, stage:III, dead, 438 days
620.2
DO46508
0 years, female, NA, stage:III, dead, 2101 days
616.8
DO46330
0 years, female, NA, stage:III, dead, 684 days
614.2
DO46538
0 years, female, NA, stage:III, dead, 1527 days
594.8
DO46458
0 years, female, NA, stage:IV, alive, 3787 days
582.3
DO46328
0 years, female, NA, stage:III, dead, 972 days
570.8
DO46513
0 years, female, NA, stage:IV, dead, 1883 days
568.0
DO46350
0 years, female, NA, stage:III, dead, 886 days
565.1
DO46518
0 years, female, NA, stage:III, alive, 2960 days
544.8
DO46396
0 years, female, NA, stage:III, dead, 583 days
540.5
DO46443
0 years, female, NA, stage:III, dead, 2464 days
533.7
DO46372
0 years, female, NA, stage:III, dead, 1326 days
512.8
DO46493
0 years, female, NA, stage:IV, alive, 839 days
490.5
DO46432
0 years, female, NA, stage:III, alive, 2218 days
485.5
DO46453
0 years, female, NA, stage:III, dead, 3294 days
485.4
DO46346
0 years, female, NA, stage:III, dead, 1187 days
474.2
DO46392
0 years, female, NA, stage:III, dead, 628 days
464.4
DO46448
0 years, female, NA, stage:III, dead, 654 days
464.3
DO46386
0 years, female, NA, stage:III, dead, 1162 days
462.9
DO46551
0 years, female, NA, stage:III, dead, 1055 days
452.2
DO46376
0 years, female, NA, stage:III, dead, 1430 days
434.4
DO46329
0 years, female, NA, stage:III, dead, 1699 days
433.8
DO46597
0 years, female, NA, stage:III, dead, 393 days
428.9
DO46533
0 years, female, NA, stage:III, alive, 3667 days
425.4
DO46571
0 years, female, NA, stage:III, dead, 243 days
417.1
DO46404
0 years, female, NA, stage:III, dead, 690 days
404.5
DO46333
0 years, female, NA, stage:III, dead, 359 days
404.4
DO46438
0 years, female, NA, stage:IV, alive, 2227 days
399.6
DO46436
0 years, female, NA, stage:III, alive, 3193 days
393.8
DO46388
0 years, female, NA, stage:III, dead, 413 days
383.9
DO46468
0 years, female, NA, stage:III, alive, 2776 days
383.1
DO46576
0 years, female, NA, stage:III, alive, 133 days
381.8
DO46348
0 years, female, NA, stage:IV, dead, 287 days
373.9
DO46332
0 years, female, NA, stage:III, dead, 689 days
372.0
DO46356
0 years, female, NA, stage:III, dead, 911 days
368.5
DO46561
0 years, female, NA, stage:III, dead, 195 days
368.3
DO46366
0 years, female, NA, stage:III, dead, 2054 days
362.4
DO46528
0 years, female, NA, stage:III, alive, 6139 days
358.7
DO46378
0 years, female, NA, stage:III, alive, 843 days
349.9
DO46327
0 years, female, NA, stage:III, dead, 184 days
345.5
DO46331
0 years, female, NA, stage:III, dead, 612 days
337.9
DO46340
0 years, female, NA, stage:III, dead, 616 days
333.7
DO46362
0 years, female, NA, stage:III, dead, 1639 days
327.6
DO46344
0 years, female, NA, stage:III, dead, 642 days
327.0
DO46428
0 years, female, NA, stage:IV, alive, 2644 days
324.8
DO46354
0 years, female, NA, stage:III, dead, 843 days
317.4
DO46342
0 years, female, NA, stage:III, dead, 1398 days
312.4
DO46602
0 years, female, NA, stage:III, dead, 205 days
295.9
DO46358
0 years, female, NA, stage:III, dead, 423 days
268.2
DO46336
0 years, female, NA, stage:IV, dead, 664 days
237.8
DO46546
0 years, female, NA, stage:III, dead, 1889 days
211.5
DO46382
0 years, female, NA, stage:IV, dead, 311 days
202.4
DO46611
0 years, female, NA, stage:III, dead, 734 days
156.9
Show allShow less
OVARY SEROUS CYSTADENOCARCINOMA - Protein relative expression (CPTAC)
Number of samples
108
Samples
Sample ID
Sample type
nRPX
a03d1103-b809-42c4-ad5c-5aff58_D2
Tumor
1.8
41d0619e-b299-42e2-ac32-29e784_D2
Tumor
1.7
91b287fd-eadb-442d-abcd-20b741_D2
Tumor
1.7
27f3ca2d-a86f-479d-8e7e-5307c7_D2
Tumor
1.6
8d78194e-fbef-4819-a7b5-b73ae9_D2
Tumor
1.6
3a380577-c134-47ba-a1ce-988d7c_D2
Tumor
1.6
627e6e36-3dca-4ee5-9755-6f3510_D2
Tumor
1.6
af95e2c6-25c4-4ab8-bf06-3e15ff_D2
Tumor
1.6
347e379b-77c0-4dd3-aa25-18c9d1_D2
Tumor
1.5
c17b0ff9-9057-4848-a0cc-abb25f_D2
Tumor
1.5
2dc28da8-7ff1-4b9b-b5bd-17cc25_D2
Tumor
1.4
fe83e13f-9754-403b-8f74-d6caf8_D2
Tumor
1.4
5c3971ee-87c7-4dff-b66e-f18892_D2
Tumor
1.4
1b2ab076-c72f-4bbe-b9f9-657d24_D2
Tumor
1.4
161317f3-1a39-438e-af45-cd2502_D2
Tumor
1.3
d38f40fb-dd78-43b2-8b7b-4b6977_D2
Tumor
1.3
1de8d3d8-fc0e-4be0-8aa7-127c7b_D2
Tumor
1.3
e9d416e7-f661-400a-896e-388545_D2
Tumor
1.3
80873a0c-1f40-4d51-bab1-3f2071_D2
Tumor
1.3
76e77c6b-c80e-4391-bdbb-e1dcea_D2
Tumor
1.2
eb0a53df-7620-4024-8d2d-051142_D2
Tumor
1.2
2563cb02-d58a-4286-8634-7502cd_D2
Tumor
1.2
256ac9f5-1e19-44b4-92fb-fef3fc_D2
Tumor
1.2
50997c44-1c8b-4d34-b535-4a6cc2_D2
Tumor
1.2
ce1e5dfc-2ef1-4633-af93-5ea4d9_D2
Tumor
1.2
74a45e5a-a35a-4c60-a4b4-f3f5ea_D2
Tumor
1.1
d109a3c0-350e-47f5-bda0-61899c_D2
Tumor
1.1
4ccb249a-6722-491e-97e9-e3b4e7_D2
Tumor
1.1
1772e913-f62e-446a-8cf3-720348_D2
Tumor
1.1
5ea22f5e-307b-491d-801f-8b7fa6_D2
Tumor
1.1
2433b136-fc7b-4cea-b958-bc6efb_D2
Tumor
1.1
318d53c3-216b-4de1-a098-77d6dd_D2
Tumor
1.1
7069e990-4a4e-4984-a66d-4d835a_D2
Tumor
1.1
3dcf8b3c-c0c5-4dfa-9543-5d30fb_D2
Tumor
1.0
3d3e1888-d67e-4c69-ba83-112d0f_D2
Tumor
1.0
927f0958-db5a-4bc5-92b7-2a3695_D2
Tumor
1.0
7d953d1d-84b6-4ecd-b1d7-1ed865_D2
Tumor
1.0
e7b656bf-3c34-4ba1-bdf3-c7eefe_D2
Tumor
1.0
558333b0-ea23-4303-9e3c-4932b1_D2
Tumor
0.9
52c064a7-78d9-4a1a-85b4-27c6d1_D2
Tumor
0.9
2115808b-6a0d-49bc-a8d7-b83bde_D2
Tumor
0.9
15524912-685a-47ce-a824-567848_D2
Tumor
0.9
e3ebe010-cd31-4b5d-8fcb-b7103b_D2
Tumor
0.9
a8853382-b726-4ce8-98d5-ca89df_D2
Tumor
0.8
285fed94-1495-448e-879b-b55de9_D2
Tumor
0.8
9c8e78bf-b03e-4ba0-9909-5ff070_D2
Tumor
0.8
d4791079-c826-4fc7-9d9b-ee20ba_D2
Tumor
0.8
3490835c-c004-45ed-91f3-7c206f_D2
Tumor
0.8
2b4ce90c-8036-4207-ac3e-54a76f_D2
Tumor
0.8
1a10c200-3895-4648-b951-94f99f_D2
Tumor
0.8
79b60f32-6cca-4cb6-9a1e-22a3ac_D2
Tumor
0.7
eb3f3494-7057-4afe-b212-e6e9a3_D2
Tumor
0.7
9b90eb78-2f50-4aeb-b010-d642f9_D2
Tumor
0.7
69d552be-7cb2-4bb4-b602-a27b3e_D2
Tumor
0.7
2224c03f-b7b1-4368-887e-2b4cdf_D2
Tumor
0.6
9e0d47e0-f633-468b-b82b-4d752d_D2
Tumor
0.6
1c9145ad-1981-4871-aa7e-8b11de_D2
Tumor
0.6
28d0abdb-f682-4bd3-9425-a9c508_D2
Tumor
0.6
1556af7e-c2ae-4fce-9aae-87c459_D1_D2
Normal
0.6
46c73531-f531-4ec3-97fe-b39d9d_D2
Tumor
0.5
62f5840e-6cd7-4200-b651-645e53_D2
Tumor
0.5
f6c215ea-5381-4521-bb61-be8e97_D2
Tumor
0.5
8234f8ea-bdbd-45b0-bd0b-16f1e7_D2
Tumor
0.5
fbb41c94-aabd-49cc-90b2-882c3e_D2
Tumor
0.5
31c15e30-21d4-4843-bd4a-9cd0d8_D2
Normal
0.5
2f901c90-617e-46da-9fac-d68369_D2
Tumor
0.5
51c1c79e-5a8e-4b0a-bf92-1c0cab_D2
Tumor
0.4
340a3769-3031-41ae-bb08-a2f696_D2
Normal
0.4
0cc794c3-5bf5-4621-b238-58a0f6_D2
Tumor
0.3
61f76fe6-a1c6-41b8-bdc2-2f9209_D2
Normal
0.3
a65d8e76-640f-4341-a561-afbb57_D2
Normal
0.2
49bd51fe-48a1-4828-b66e-b30c38_D2
Tumor
0.2
9a7a86d3-bbf2-4d36-941d-c75c03_D1_D2
Tumor
0.2
3e746bea-ed68-40e6-b348-6ddf08_D2
Normal
0.2
092af714-b97a-457c-b0e9-8c20e8_D2
Normal
0.1
21efd60f-6a31-4b98-9477-16a905_D2
Normal
0.1
cfd76f9a-ce60-4ec7-8e6b-a8fc31_D3
Tumor
0.1
3fbf076a-824b-4eac-b6dc-bf5e59_D2
Normal
0.0
0745488e-0bfb-4d1f-8228-dedf76_D1_D2
Normal
0.0
08296da7-70ea-44df-8646-09f2cc_D2
Tumor
0.0
42d860a3-8a0c-4c44-a09a-9ad8cf_D2
Tumor
0.0
1abbcb28-f221-4cd4-8c01-37b9bb_D1_D2
Normal
0.0
a3a26070-fb84-406a-8280-d555e6_D2
Normal
0.0
8e17b45e-6a06-4e4e-913d-7b1edb_D2
Tumor
-0.1
7edfd606-4bee-4529-9fec-1ca7f0_D2
Normal
-0.1
e6850782-fd2a-4c53-b682-1852fe_D2
Tumor
-0.1
6e209757-a7f4-45af-b5f3-2ebc02_D2
Normal
-0.1
7c7ce2d7-6c8a-424e-8e6c-d14ad1_D2
Tumor
-0.1
6530147a-efe9-4df6-ac2f-03ece3_D2
Tumor
-0.1
6319b36b-533c-4e86-8e12-80552e_D3
Tumor
-0.2
10c2d629-0287-4511-ac25-f29031_D2
Tumor
-0.2
0c87932d-b6fd-4eb5-b86a-a34d07_D2
Tumor
-0.2
05387aad-2a1f-42c2-8d6f-950598_D3
Tumor
-0.2
a583d3ff-8165-43e9-b764-23b7ef_D1_D2
Normal
-0.3
994f9b8e-46cb-413f-8ec8-2c2fed_D2
Normal
-0.3
2b73e01c-347a-4dae-a71d-752aeb_D2
Normal
-0.3
8ed739dd-ae0f-4881-971a-db3cf4_D1_D2
Normal
-0.3
e23eb014-69c1-460a-b9d4-9786c8_D2
Normal
-0.3
35a345a4-e954-4c81-ae3f-7797cd_D2
Tumor
-0.4
1db5574d-aca7-403c-8100-6e705f_D2
Normal
-0.4
efc971f8-54c5-4531-a792-705ecf_D2
Tumor
-0.4
b9c1f22e-61f7-45ed-b3b4-5094c7_D2
Normal
-0.5
b22659b9-e12c-4725-a7db-a833de_D1_D2
Normal
-0.5
3946a96c-e0ae-442f-83b4-a9350e_D2
Tumor
-0.6
2ed8beb2-bc63-4bad-b5fe-1916a0_D2
Tumor
-0.6
51a4ce2f-4166-4c6b-a7e0-942d0a_D2
Tumor
-0.6
bd266bdd-12e4-42cb-9c49-911bfc_D2
Tumor
-0.7
685ec3c2-e67a-40d3-9eb3-aa01c9_D1_D2
Normal
-0.9
Show allShow less
OVARIAN CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.