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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC30A5 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
17.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
53.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
46.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
39.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
38.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
37.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
36.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
36.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
35.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
35.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
35.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
34.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
34.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
34.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
33.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
33.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
32.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
32.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
30.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
30.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
30.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
30.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
30.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
29.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
29.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
29.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
29.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
29.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
28.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
28.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
28.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
28.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
28.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
28.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
27.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
27.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
27.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
27.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
26.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
26.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
26.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
26.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
26.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
26.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
26.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
25.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
25.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
25.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
25.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
25.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
25.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
25.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
25.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
25.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
24.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
24.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
24.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
23.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
23.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
23.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
23.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
23.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
23.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
23.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
23.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
23.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
23.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
23.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
23.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
22.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
22.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
22.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
22.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
22.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
22.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
22.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
22.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
22.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
22.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
22.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
22.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
22.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
22.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
21.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
21.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
21.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
21.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
21.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
20.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
20.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
20.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
20.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
20.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
20.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
20.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
20.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
20.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
20.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
20.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
20.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
20.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
20.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
20.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
20.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
19.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
19.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
19.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
19.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
19.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
19.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
19.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
19.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
19.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
19.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
19.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
19.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
19.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
19.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
19.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
19.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
19.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
19.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
19.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
19.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
18.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
18.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
18.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
18.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
18.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
18.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
18.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
18.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
18.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
18.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
18.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
18.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
18.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
18.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
18.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
18.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
17.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
17.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
17.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
17.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
17.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
17.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
17.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
17.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
17.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
17.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
17.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
17.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
17.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
17.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
17.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
17.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
17.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
17.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
17.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
17.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
17.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
17.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
17.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
17.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
17.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
17.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
16.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
16.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
16.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
16.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
16.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
16.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
16.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
16.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
16.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
16.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
16.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
16.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
16.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
16.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
16.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
16.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
16.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
16.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
16.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
16.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
16.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
16.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
16.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
16.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
16.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
16.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
16.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
16.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
15.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
15.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
15.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
15.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
15.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
15.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
15.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
15.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
15.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
15.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
15.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
15.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
15.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
15.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
15.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
15.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
15.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
15.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
15.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
15.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
15.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
15.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
15.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
15.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
14.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
14.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
14.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
14.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
14.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
14.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
14.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
14.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
14.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
14.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
14.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
14.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
14.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
14.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
14.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
14.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
14.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
14.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
14.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
13.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
13.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
13.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
13.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
13.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
13.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
13.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
13.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
13.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
13.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
13.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
13.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
13.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
13.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
13.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
13.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
13.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
13.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
13.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
13.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
13.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
13.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
13.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
12.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
12.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
12.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
12.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
12.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
12.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
12.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
12.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
12.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
12.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
12.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
12.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
12.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
12.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
12.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
12.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
12.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
12.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
12.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
12.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
11.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
11.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
11.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
11.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
11.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
11.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
11.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
11.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
11.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
11.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
11.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
11.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
11.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
11.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
11.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
11.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
11.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
11.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
11.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
11.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
11.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
11.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
11.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
11.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
11.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
11.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
11.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
11.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
11.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
10.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
10.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
10.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
10.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
10.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
10.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
10.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
10.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
10.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
10.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
10.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
10.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
10.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
10.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
10.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
9.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
9.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
9.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
9.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
9.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
9.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
9.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
9.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
9.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
9.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
9.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
9.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
9.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
9.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
9.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
9.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
9.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
8.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
8.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
8.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
8.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
8.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
8.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
8.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
8.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
8.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
7.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
7.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
6.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
6.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
6.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
5.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
4.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC30A5 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.6
Number of samples
231
Samples
Sample
Description
TPM
DO45203
0 years, female, NA, stage:2, alive, 1170 days
20.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
19.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
18.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
18.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
18.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
18.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
18.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
18.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
17.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
17.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
17.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
17.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
16.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
16.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
16.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
16.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
16.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
16.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
16.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
16.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
16.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
16.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
16.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
16.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
15.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
15.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
15.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
15.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
15.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
15.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
15.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
15.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
15.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
15.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
14.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
14.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
14.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
14.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
14.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
14.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
14.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
14.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
14.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
14.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
14.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
14.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
14.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
13.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
13.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
13.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
13.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
13.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
13.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
13.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
13.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
13.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
13.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
13.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
13.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
12.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
12.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
12.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
12.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
12.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
12.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
12.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
12.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
12.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
12.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
12.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
12.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
12.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
12.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
12.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
12.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
12.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
12.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
12.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
12.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
12.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
11.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
11.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
11.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
11.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
11.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
11.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
11.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
11.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
11.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
11.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
11.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
11.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
11.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
11.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
11.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
11.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
11.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
11.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
11.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
11.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
10.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
10.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
10.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
10.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
10.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
10.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
10.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
10.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
10.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
10.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
10.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
10.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
10.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
10.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
10.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
10.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
10.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
10.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
10.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
10.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
9.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
9.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
9.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
9.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
9.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
9.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
9.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
9.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
9.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
9.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
9.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
9.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
9.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
9.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
9.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
9.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
9.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
9.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
9.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
9.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
9.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
8.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
8.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
8.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
8.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
8.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
8.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
8.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
8.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
8.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
8.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
8.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
8.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
8.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
8.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
8.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
8.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
8.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
8.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
8.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
8.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
8.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
8.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
8.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
8.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
8.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
8.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
8.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
8.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
7.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
7.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
7.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
7.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
7.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
7.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
7.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
7.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
7.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
7.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
7.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
7.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
7.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
7.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
7.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
7.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
7.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
7.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
7.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
7.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
7.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
7.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
7.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
6.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
6.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
6.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
6.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
6.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
6.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
6.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
6.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
6.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
6.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
6.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
6.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
6.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
5.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
5.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
5.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
5.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
5.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
4.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
4.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
4.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
4.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
4.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
3.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
3.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
527
Tumor
1.1
533
Tumor
1.0
427
Tumor
1.0
911
Tumor
1.0
965
Tumor
0.9
913
Tumor
0.8
211
Tumor
0.8
925
Tumor
0.8
573
Tumor
0.8
351
Tumor
0.8
487
Tumor
0.8
537
Tumor
0.8
145
Tumor
0.8
523
Tumor
0.8
957
Tumor
0.7
285
Tumor
0.7
923
Tumor
0.7
647
Tumor
0.7
257
Tumor
0.7
1025
Tumor
0.7
743
Tumor
0.7
355
Tumor
0.7
227
Tumor
0.6
491
Tumor
0.6
697
Tumor
0.6
1027
Tumor
0.6
713
Tumor
0.6
517
Tumor
0.6
525
Tumor
0.6
617
Tumor
0.6
951
Tumor
0.6
131
Tumor
0.6
473
Tumor
0.6
813
Tumor
0.6
535
Tumor
0.6
393
Tumor
0.5
497
Tumor
0.5
191
Tumor
0.5
1041
Tumor
0.5
1043
Tumor
0.5
1013
Tumor
0.5
557
Tumor
0.5
395
Tumor
0.5
823
Tumor
0.4
413
Tumor
0.4
727
Tumor
0.4
231
Tumor
0.4
327
Tumor
0.4
391
Tumor
0.4
447
Tumor
0.4
123
Tumor
0.4
745
Tumor
0.4
963
Tumor
0.4
553
Tumor
0.4
536
Normal
0.4
571
Tumor
0.4
341
Tumor
0.3
977
Tumor
0.3
1021
Tumor
0.3
411
Tumor
0.3
866
Normal
0.3
471
Tumor
0.3
567
Tumor
0.3
641
Tumor
0.3
863
Tumor
0.3
435
Tumor
0.3
187
Tumor
0.3
383
Tumor
0.3
665
Tumor
0.3
635
Tumor
0.3
817
Tumor
0.3
385
Tumor
0.3
917
Tumor
0.3
724
Normal
0.3
261
Tumor
0.2
493
Tumor
0.2
267
Tumor
0.2
213
Tumor
0.2
147
Tumor
0.2
857
Tumor
0.2
937
Tumor
0.2
135
Tumor
0.2
814
Normal
0.2
421
Tumor
0.2
353
Tumor
0.2
277
Tumor
0.2
113
Tumor
0.2
867
Tumor
0.2
461
Tumor
0.2
425
Tumor
0.2
481
Tumor
0.2
883
Tumor
0.1
297
Tumor
0.1
311
Tumor
0.1
415
Tumor
0.1
223
Tumor
0.1
921
Tumor
0.1
483
Tumor
0.1
387
Tumor
0.1
467
Tumor
0.1
663
Tumor
0.1
141
Tumor
0.1
983
Tumor
0.1
161
Tumor
0.1
363
Tumor
0.1
545
Tumor
0.1
492
Normal
0.1
861
Tumor
0.1
494
Normal
0.1
975
Tumor
0.1
1045
Tumor
0.1
695
Tumor
0.1
741
Tumor
0.1
563
Tumor
0.1
922
Normal
0.1
431
Tumor
0.0
666
Normal
0.0
558
Normal
0.0
515
Tumor
0.0
477
Tumor
0.0
343
Tumor
0.0
423
Tumor
0.0
953
Tumor
0.0
1014
Normal
0.0
524
Normal
0.0
967
Tumor
0.0
538
Normal
0.0
433
Tumor
0.0
488
Normal
0.0
851
Tumor
0.0
968
Normal
0.0
514
Normal
0.0
384
Normal
0.0
361
Tumor
0.0
915
Tumor
0.0
564
Normal
0.0
331
Tumor
0.0
455
Tumor
0.0
672
Normal
0.0
448
Normal
0.0
721
Tumor
0.0
221
Tumor
0.0
212
Normal
0.0
874
Normal
0.0
195
Tumor
0.0
463
Tumor
0.0
926
Normal
0.0
283
Tumor
0.0
873
Tumor
-0.1
228
Normal
-0.1
528
Normal
-0.1
568
Normal
-0.1
367
Tumor
-0.1
777
Tumor
-0.1
368
Normal
-0.1
443
Tumor
-0.1
864
Normal
-0.1
112
Tumor
-0.1
852
Normal
-0.1
142
Normal
-0.1
616
Normal
-0.1
862
Normal
-0.1
978
Normal
-0.1
664
Normal
-0.1
1016
Normal
-0.1
574
Normal
-0.1
868
Normal
-0.1
137
Tumor
-0.1
428
Normal
-0.1
171
Tumor
-0.1
918
Normal
-0.1
286
Normal
-0.1
451
Tumor
-0.1
984
Normal
-0.1
554
Normal
-0.1
648
Normal
-0.1
478
Normal
-0.1
271
Tumor
-0.1
484
Normal
-0.1
185
Tumor
-0.1
916
Normal
-0.1
881
Tumor
-0.1
526
Normal
-0.1
877
Tumor
-0.1
1026
Normal
-0.1
498
Normal
-0.1
1031
Tumor
-0.1
728
Normal
-0.1
572
Normal
-0.1
786
Normal
-0.1
954
Normal
-0.1
392
Normal
-0.2
698
Normal
-0.2
943
Tumor
-0.2
125
Tumor
-0.2
1044
Normal
-0.2
818
Normal
-0.2
618
Normal
-0.2
217
Tumor
-0.2
938
Normal
-0.2
816
Normal
-0.2
546
Normal
-0.2
186
Normal
-0.2
218
Normal
-0.2
952
Normal
-0.2
422
Normal
-0.2
696
Normal
-0.2
628
Normal
-0.2
956
Normal
-0.2
914
Normal
-0.2
222
Normal
-0.2
388
Normal
-0.2
124
Normal
-0.2
966
Normal
-0.2
376
Normal
-0.2
636
Normal
-0.2
192
Normal
-0.2
958
Normal
-0.2
534
Normal
-0.2
352
Normal
-0.2
188
Normal
-0.2
412
Normal
-0.2
196
Normal
-0.2
976
Normal
-0.2
1028
Normal
-0.2
232
Normal
-0.2
1022
Normal
-0.2
114
Normal
-0.2
944
Normal
-0.2
924
Normal
-0.2
462
Normal
-0.2
214
Normal
-0.2
396
Normal
-0.3
426
Normal
-0.3
1042
Normal
-0.3
815
Tumor
-0.3
313
Tumor
-0.3
981
Tumor
-0.3
424
Normal
-0.3
365
Tumor
-0.3
746
Normal
-0.3
858
Normal
-0.3
224
Normal
-0.3
982
Normal
-0.3
642
Normal
-0.3
824
Normal
-0.3
328
Normal
-0.3
482
Normal
-0.3
362
Normal
-0.3
737
Tumor
-0.3
386
Normal
-0.3
258
Normal
-0.3
1032
Normal
-0.3
111
Normal
-0.3
686
Normal
-0.3
474
Normal
-0.3
342
Normal
-0.3
884
Normal
-0.3
778
Normal
-0.3
128
Normal
-0.3
262
Normal
-0.3
127
Tumor
-0.3
366
Normal
-0.3
146
Normal
-0.3
414
Normal
-0.3
955
Tumor
-0.3
755
Tumor
-0.3
354
Normal
-0.3
358
Normal
-0.3
148
Normal
-0.3
518
Normal
-0.3
162
Normal
-0.3
172
Normal
-0.3
436
Normal
-0.3
298
Normal
-0.3
516
Normal
-0.3
627
Tumor
-0.3
715
Tumor
-0.3
722
Normal
-0.3
284
Normal
-0.3
356
Normal
-0.3
394
Normal
-0.4
357
Tumor
-0.4
464
Normal
-0.4
513
Tumor
-0.4
344
Normal
-0.4
375
Tumor
-0.4
714
Normal
-0.4
126
Normal
-0.4
364
Normal
-0.4
685
Tumor
-0.4
268
Normal
-0.4
312
Normal
-0.4
472
Normal
-0.4
456
Normal
-0.4
416
Normal
-0.4
332
Normal
-0.4
716
Normal
-0.4
878
Normal
-0.4
466
Normal
-0.4
434
Normal
-0.4
314
Normal
-0.4
723
Tumor
-0.4
865
Tumor
-0.4
964
Normal
-0.4
468
Normal
-0.4
615
Tumor
-0.4
465
Tumor
-0.5
671
Tumor
-0.5
278
Normal
-0.5
432
Normal
-0.5
756
Normal
-0.5
738
Normal
-0.5
662
Normal
-0.5
1046
Normal
-0.5
661
Tumor
-0.5
912
Normal
-0.5
452
Normal
-0.5
744
Normal
-0.5
138
Normal
-0.5
444
Normal
-0.5
882
Normal
-0.5
136
Normal
-0.5
445
Tumor
-0.6
272
Normal
-0.6
742
Normal
-0.6
132
Normal
-0.6
446
Normal
-0.6
1015
Tumor
-0.6
785
Tumor
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
