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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SUMF1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
17.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
68.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
63.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
59.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
56.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
51.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
43.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
41.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
40.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
36.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
36.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
36.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
36.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
36.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
35.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
34.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
34.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
34.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
34.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
33.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
33.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
31.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
30.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
29.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
29.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
29.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
28.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
28.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
28.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
28.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
28.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
27.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
26.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
26.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
26.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
26.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
26.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
26.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
25.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
25.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
25.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
25.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
25.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
25.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
25.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
25.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
25.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
24.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
24.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
24.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
24.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
24.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
24.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
24.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
24.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
24.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
23.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
23.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
23.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
23.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
23.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
23.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
23.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
23.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
22.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
22.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
22.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
22.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
22.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
22.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
22.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
22.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
22.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
22.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
22.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
22.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
22.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
22.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
21.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
21.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
21.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
21.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
21.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
21.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
21.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
21.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
21.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
21.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
21.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
21.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
21.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
21.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
21.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
21.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
21.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
21.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
20.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
20.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
20.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
20.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
20.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
20.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
20.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
20.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
20.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
20.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
20.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
20.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
20.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
20.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
20.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
20.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
20.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
20.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
20.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
20.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
20.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
20.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
20.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
19.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
19.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
19.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
19.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
19.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
19.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
19.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
19.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
19.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
19.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
19.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
19.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
19.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
19.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
19.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
19.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
19.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
19.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
18.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
18.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
18.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
18.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
18.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
18.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
18.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
18.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
18.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
18.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
18.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
18.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
18.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
18.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
18.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
18.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
18.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
18.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
18.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
17.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
17.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
17.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
17.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
17.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
17.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
17.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
17.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
17.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
17.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
17.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
17.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
17.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
17.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
17.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
17.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
17.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
16.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
16.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
16.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
16.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
16.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
16.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
16.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
16.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
16.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
16.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
16.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
16.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
16.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
16.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
16.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
16.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
16.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
16.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
16.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
16.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
16.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
16.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
15.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
15.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
15.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
15.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
15.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
15.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
15.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
15.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
15.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
15.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
15.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
15.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
15.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
14.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
14.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
14.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
14.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
14.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
14.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
14.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
14.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
14.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
14.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
14.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
14.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
14.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
14.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
14.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
14.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
14.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
13.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
13.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
13.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
13.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
13.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
13.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
13.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
13.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
13.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
13.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
13.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
13.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
13.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
13.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
13.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
13.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
13.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
13.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
13.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
13.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
13.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
13.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
13.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
13.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
13.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
13.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
13.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
13.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
13.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
13.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
13.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
13.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
13.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
13.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
12.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
12.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
12.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
12.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
12.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
12.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
12.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
12.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
12.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
12.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
12.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
12.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
12.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
12.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
12.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
12.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
12.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
12.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
12.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
12.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
12.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
12.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
12.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
12.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
12.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
11.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
11.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
11.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
11.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
11.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
11.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
11.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
11.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
11.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
11.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
11.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
11.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
11.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
11.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
11.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
11.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
11.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
11.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
10.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
10.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
10.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
10.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
10.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
10.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
10.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
10.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
10.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
10.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
9.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
9.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
9.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
9.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
9.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
9.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
9.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
8.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
8.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
8.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
8.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
8.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
8.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
8.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
8.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
8.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
8.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
8.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
7.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
7.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
7.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
7.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
7.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
7.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
7.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
7.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
7.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
7.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
7.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
6.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
6.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
6.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
6.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
6.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
6.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
6.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
6.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
6.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
6.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
5.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
5.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
5.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SUMF1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.0
Number of samples
231
Samples
Sample
Description
TPM
DO45193
0 years, female, NA, stage:4, dead, 120 days
57.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
47.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
45.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
38.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
35.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
33.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
33.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
32.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
32.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
32.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
31.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
30.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
30.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
29.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
28.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
28.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
27.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
27.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
27.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
27.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
26.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
26.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
26.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
26.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
25.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
24.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
24.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
24.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
23.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
23.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
23.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
23.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
22.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
22.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
22.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
22.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
22.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
22.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
22.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
21.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
21.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
21.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
21.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
21.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
20.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
20.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
20.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
20.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
20.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
20.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
20.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
20.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
19.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
19.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
19.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
19.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
19.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
19.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
19.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
19.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
19.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
19.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
18.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
18.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
18.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
18.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
18.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
18.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
18.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
18.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
18.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
18.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
17.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
17.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
17.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
17.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
17.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
17.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
17.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
16.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
16.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
16.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
16.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
16.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
16.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
16.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
16.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
16.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
16.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
16.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
16.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
16.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
16.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
16.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
15.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
15.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
15.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
15.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
15.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
15.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
15.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
15.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
15.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
15.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
15.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
15.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
15.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
15.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
15.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
14.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
14.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
14.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
14.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
14.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
14.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
14.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
14.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
14.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
14.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
14.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
14.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
14.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
14.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
14.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
14.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
13.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
13.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
13.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
13.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
13.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
13.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
13.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
13.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
13.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
13.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
13.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
13.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
13.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
13.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
13.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
13.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
13.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
12.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
12.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
12.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
12.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
12.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
12.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
12.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
12.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
12.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
12.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
12.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
12.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
12.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
12.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
12.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
11.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
11.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
11.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
11.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
11.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
11.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
11.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
11.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
11.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
11.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
11.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
11.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
11.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
11.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
11.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
11.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
11.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
11.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
10.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
10.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
10.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
10.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
10.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
10.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
10.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
10.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
10.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
10.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
10.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
10.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
10.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
10.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
10.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
9.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
9.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
9.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
9.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
9.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
9.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
9.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
9.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
9.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
9.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
9.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
9.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
9.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
9.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
8.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
8.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
8.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
8.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
8.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
8.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
8.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
8.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
8.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
7.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
7.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
7.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
7.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
7.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
6.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
6.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
6.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
6.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
5.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
5.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
5.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
5.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
4.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
2.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
435
Tumor
1.1
925
Tumor
0.9
1015
Tumor
0.9
131
Tumor
0.8
755
Tumor
0.8
1045
Tumor
0.7
445
Tumor
0.7
914
Normal
0.6
395
Tumor
0.6
741
Tumor
0.5
951
Tumor
0.5
195
Tumor
0.5
1044
Normal
0.5
257
Tumor
0.5
968
Normal
0.5
448
Normal
0.5
978
Normal
0.5
743
Tumor
0.5
866
Normal
0.4
477
Tumor
0.4
615
Tumor
0.4
813
Tumor
0.4
473
Tumor
0.4
937
Tumor
0.4
125
Tumor
0.4
981
Tumor
0.4
368
Normal
0.4
147
Tumor
0.4
343
Tumor
0.4
267
Tumor
0.4
533
Tumor
0.4
777
Tumor
0.4
955
Tumor
0.4
1046
Normal
0.4
412
Normal
0.4
984
Normal
0.4
697
Tumor
0.3
698
Normal
0.3
112
Tumor
0.3
816
Normal
0.3
852
Normal
0.3
387
Tumor
0.3
517
Tumor
0.3
553
Tumor
0.3
863
Tumor
0.3
367
Tumor
0.3
463
Tumor
0.3
953
Tumor
0.3
356
Normal
0.3
817
Tumor
0.3
573
Tumor
0.3
636
Normal
0.3
723
Tumor
0.3
864
Normal
0.3
375
Tumor
0.3
671
Tumor
0.3
913
Tumor
0.3
944
Normal
0.3
912
Normal
0.2
525
Tumor
0.2
416
Normal
0.2
1016
Normal
0.2
727
Tumor
0.2
878
Normal
0.2
868
Normal
0.2
958
Normal
0.2
818
Normal
0.2
742
Normal
0.2
858
Normal
0.2
518
Normal
0.2
271
Tumor
0.2
462
Normal
0.2
283
Tumor
0.2
482
Normal
0.2
824
Normal
0.2
286
Normal
0.2
884
Normal
0.2
494
Normal
0.2
231
Tumor
0.2
358
Normal
0.2
383
Tumor
0.2
574
Normal
0.2
918
Normal
0.2
341
Tumor
0.2
278
Normal
0.2
361
Tumor
0.2
467
Tumor
0.2
132
Normal
0.2
738
Normal
0.2
966
Normal
0.2
982
Normal
0.2
1021
Tumor
0.2
466
Normal
0.2
1014
Normal
0.2
385
Tumor
0.2
685
Tumor
0.1
468
Normal
0.1
128
Normal
0.1
976
Normal
0.1
272
Normal
0.1
314
Normal
0.1
745
Tumor
0.1
1043
Tumor
0.1
882
Normal
0.1
956
Normal
0.1
862
Normal
0.1
426
Normal
0.1
365
Tumor
0.1
313
Tumor
0.1
232
Normal
0.1
922
Normal
0.1
662
Normal
0.1
148
Normal
0.1
564
Normal
0.1
728
Normal
0.1
938
Normal
0.1
714
Normal
0.1
415
Tumor
0.1
568
Normal
0.1
572
Normal
0.1
311
Tumor
0.1
391
Tumor
0.1
696
Normal
0.1
952
Normal
0.1
1028
Normal
0.1
392
Normal
0.1
284
Normal
0.1
642
Normal
0.1
187
Tumor
0.1
452
Normal
0.1
422
Normal
0.1
331
Tumor
0.1
524
Normal
0.1
363
Tumor
0.1
814
Normal
0.0
138
Normal
0.0
312
Normal
0.0
724
Normal
0.0
432
Normal
0.0
618
Normal
0.0
943
Tumor
0.0
737
Tumor
0.0
672
Normal
0.0
185
Tumor
0.0
474
Normal
0.0
917
Tumor
0.0
221
Tumor
0.0
258
Normal
0.0
916
Normal
0.0
124
Normal
0.0
514
Normal
0.0
394
Normal
0.0
111
Normal
0.0
1042
Normal
0.0
297
Tumor
0.0
366
Normal
0.0
778
Normal
0.0
874
Normal
0.0
526
Normal
0.0
268
Normal
0.0
523
Tumor
0.0
212
Normal
0.0
663
Tumor
0.0
554
Normal
0.0
171
Tumor
0.0
513
Tumor
0.0
1022
Normal
0.0
648
Normal
0.0
924
Normal
0.0
354
Normal
0.0
191
Tumor
0.0
362
Normal
0.0
926
Normal
0.0
963
Tumor
0.0
491
Tumor
0.0
388
Normal
0.0
563
Tumor
0.0
515
Tumor
0.0
616
Normal
0.0
213
Tumor
0.0
431
Tumor
0.0
376
Normal
0.0
136
Normal
-0.1
628
Normal
-0.1
214
Normal
-0.1
915
Tumor
-0.1
162
Normal
-0.1
746
Normal
-0.1
528
Normal
-0.1
188
Normal
-0.1
211
Tumor
-0.1
472
Normal
-0.1
851
Tumor
-0.1
756
Normal
-0.1
262
Normal
-0.1
1031
Tumor
-0.1
516
Normal
-0.1
224
Normal
-0.1
384
Normal
-0.1
332
Normal
-0.1
436
Normal
-0.1
1026
Normal
-0.1
127
Tumor
-0.1
444
Normal
-0.1
186
Normal
-0.1
498
Normal
-0.1
298
Normal
-0.1
617
Tumor
-0.1
228
Normal
-0.1
227
Tumor
-0.1
964
Normal
-0.1
142
Normal
-0.1
328
Normal
-0.1
695
Tumor
-0.1
883
Tumor
-0.1
411
Tumor
-0.1
114
Normal
-0.1
865
Tumor
-0.1
484
Normal
-0.1
344
Normal
-0.1
954
Normal
-0.1
285
Tumor
-0.1
983
Tumor
-0.1
481
Tumor
-0.1
424
Normal
-0.1
1041
Tumor
-0.1
357
Tumor
-0.1
492
Normal
-0.1
722
Normal
-0.1
393
Tumor
-0.1
461
Tumor
-0.2
352
Normal
-0.2
342
Normal
-0.2
857
Tumor
-0.2
386
Normal
-0.2
172
Normal
-0.2
446
Normal
-0.2
666
Normal
-0.2
192
Normal
-0.2
327
Tumor
-0.2
364
Normal
-0.2
558
Normal
-0.2
686
Normal
-0.2
414
Normal
-0.2
447
Tumor
-0.2
744
Normal
-0.2
218
Normal
-0.2
786
Normal
-0.2
921
Tumor
-0.2
478
Normal
-0.2
351
Tumor
-0.2
135
Tumor
-0.2
713
Tumor
-0.2
497
Tumor
-0.2
873
Tumor
-0.2
1032
Normal
-0.2
538
Normal
-0.2
428
Normal
-0.2
664
Normal
-0.2
161
Tumor
-0.2
451
Tumor
-0.2
223
Tumor
-0.2
196
Normal
-0.2
716
Normal
-0.3
546
Normal
-0.3
464
Normal
-0.3
661
Tumor
-0.3
975
Tumor
-0.3
433
Tumor
-0.3
488
Normal
-0.3
455
Tumor
-0.3
471
Tumor
-0.3
353
Tumor
-0.3
721
Tumor
-0.3
483
Tumor
-0.3
277
Tumor
-0.3
261
Tumor
-0.3
396
Normal
-0.3
137
Tumor
-0.3
665
Tumor
-0.3
113
Tumor
-0.3
911
Tumor
-0.3
217
Tumor
-0.3
715
Tumor
-0.3
493
Tumor
-0.3
534
Normal
-0.3
881
Tumor
-0.3
421
Tumor
-0.3
957
Tumor
-0.3
434
Normal
-0.3
355
Tumor
-0.4
456
Normal
-0.4
222
Normal
-0.4
465
Tumor
-0.4
1027
Tumor
-0.4
141
Tumor
-0.4
126
Normal
-0.4
861
Tumor
-0.4
877
Tumor
-0.4
867
Tumor
-0.4
535
Tumor
-0.4
145
Tumor
-0.4
536
Normal
-0.4
923
Tumor
-0.4
785
Tumor
-0.5
545
Tumor
-0.5
815
Tumor
-0.5
641
Tumor
-0.5
823
Tumor
-0.5
977
Tumor
-0.5
567
Tumor
-0.5
557
Tumor
-0.5
425
Tumor
-0.5
627
Tumor
-0.5
487
Tumor
-0.5
967
Tumor
-0.5
537
Tumor
-0.5
1025
Tumor
-0.6
423
Tumor
-0.6
146
Normal
-0.6
413
Tumor
-0.6
647
Tumor
-0.7
427
Tumor
-0.7
965
Tumor
-0.7
123
Tumor
-0.7
571
Tumor
-0.8
635
Tumor
-0.8
1013
Tumor
-1.0
527
Tumor
-1.1
443
Tumor
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
