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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HDGF is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
177.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
505.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
494.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
479.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
460.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
429.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
415.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
401.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
382.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
381.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
367.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
364.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
360.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
358.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
358.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
356.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
347.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
345.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
345.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
336.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
324.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
313.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
313.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
311.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
309.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
304.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
304.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
302.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
294.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
286.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
285.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
282.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
279.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
277.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
275.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
274.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
273.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
271.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
267.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
264.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
264.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
261.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
260.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
258.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
257.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
257.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
256.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
256.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
251.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
247.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
245.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
245.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
245.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
245.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
243.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
242.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
238.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
236.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
236.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
234.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
233.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
232.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
231.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
231.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
228.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
226.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
225.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
225.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
225.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
224.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
224.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
224.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
222.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
221.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
221.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
221.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
220.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
220.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
220.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
219.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
219.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
219.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
218.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
218.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
217.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
217.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
216.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
216.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
215.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
214.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
213.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
212.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
211.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
211.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
210.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
210.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
209.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
209.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
209.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
208.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
208.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
207.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
207.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
205.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
204.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
204.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
203.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
202.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
200.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
200.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
199.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
199.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
198.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
197.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
196.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
195.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
195.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
191.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
191.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
190.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
190.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
190.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
189.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
189.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
188.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
187.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
187.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
185.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
185.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
184.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
184.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
184.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
183.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
182.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
182.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
182.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
181.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
181.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
180.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
180.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
180.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
178.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
177.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
177.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
176.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
176.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
175.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
175.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
175.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
174.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
174.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
173.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
173.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
172.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
172.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
172.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
172.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
171.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
171.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
171.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
171.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
170.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
170.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
169.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
169.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
168.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
166.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
166.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
165.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
165.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
164.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
164.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
164.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
163.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
163.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
163.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
163.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
163.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
162.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
162.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
162.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
161.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
160.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
160.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
160.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
159.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
159.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
159.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
159.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
159.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
158.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
158.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
158.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
157.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
157.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
156.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
156.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
156.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
156.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
156.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
156.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
155.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
155.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
155.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
155.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
154.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
154.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
152.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
152.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
151.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
150.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
150.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
150.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
149.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
148.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
148.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
148.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
146.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
146.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
146.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
145.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
145.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
145.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
145.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
144.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
144.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
143.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
143.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
142.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
142.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
142.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
141.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
141.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
140.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
140.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
139.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
139.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
138.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
138.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
138.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
138.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
137.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
136.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
136.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
135.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
135.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
135.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
135.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
134.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
134.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
133.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
133.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
133.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
132.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
131.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
131.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
131.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
130.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
130.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
130.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
130.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
130.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
129.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
129.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
128.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
127.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
127.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
127.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
126.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
126.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
126.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
126.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
125.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
125.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
124.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
123.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
123.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
123.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
122.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
122.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
122.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
122.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
122.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
122.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
122.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
122.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
121.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
120.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
120.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
120.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
119.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
119.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
118.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
118.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
117.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
117.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
117.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
116.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
116.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
115.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
115.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
115.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
114.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
114.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
113.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
112.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
112.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
111.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
110.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
110.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
110.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
110.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
109.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
109.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
108.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
107.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
107.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
105.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
105.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
104.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
104.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
102.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
102.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
101.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
100.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
100.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
99.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
99.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
99.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
98.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
98.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
96.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
95.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
94.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
94.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
94.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
94.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
94.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
92.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
92.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
92.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
91.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
89.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
89.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
88.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
87.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
85.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
83.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
77.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
75.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
75.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
75.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
75.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
73.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
70.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
67.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
66.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
66.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
61.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
57.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
51.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
46.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HDGF is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
185.1
Number of samples
231
Samples
Sample
Description
TPM
DO45209
0 years, male, NA, stage:4, alive, 1350 days
598.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
511.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
424.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
400.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
400.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
376.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
367.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
363.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
328.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
322.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
319.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
318.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
303.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
299.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
298.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
293.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
292.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
292.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
292.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
284.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
278.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
275.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
274.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
272.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
271.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
271.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
269.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
266.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
262.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
261.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
261.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
255.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
253.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
251.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
251.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
250.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
250.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
248.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
248.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
248.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
246.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
245.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
244.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
243.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
242.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
242.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
242.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
242.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
241.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
240.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
240.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
239.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
238.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
237.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
235.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
234.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
231.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
230.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
229.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
228.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
227.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
226.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
223.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
221.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
220.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
220.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
218.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
218.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
218.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
218.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
216.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
215.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
215.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
213.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
212.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
208.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
207.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
205.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
205.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
204.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
203.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
203.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
202.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
201.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
200.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
200.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
198.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
198.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
196.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
195.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
194.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
193.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
192.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
192.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
190.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
188.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
187.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
186.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
185.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
185.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
185.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
184.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
182.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
182.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
180.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
178.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
176.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
176.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
175.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
175.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
175.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
173.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
173.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
173.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
172.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
171.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
169.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
169.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
169.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
167.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
167.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
166.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
166.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
166.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
165.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
165.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
165.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
163.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
163.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
162.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
162.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
162.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
160.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
159.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
159.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
158.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
158.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
158.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
157.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
154.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
153.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
153.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
152.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
150.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
150.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
149.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
148.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
147.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
147.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
146.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
146.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
146.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
146.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
145.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
144.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
144.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
143.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
143.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
143.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
142.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
141.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
139.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
139.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
138.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
137.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
137.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
135.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
134.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
133.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
133.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
133.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
133.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
133.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
131.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
131.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
131.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
131.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
130.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
129.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
127.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
127.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
126.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
123.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
122.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
122.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
121.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
121.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
118.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
117.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
115.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
115.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
115.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
114.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
114.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
113.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
109.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
108.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
108.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
108.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
106.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
103.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
102.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
102.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
101.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
101.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
100.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
100.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
98.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
98.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
98.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
98.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
97.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
97.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
96.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
96.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
95.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
93.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
93.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
92.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
91.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
85.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
80.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
79.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
77.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
77.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
77.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
75.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
73.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
63.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
59.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
38.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
427
Tumor
1.4
131
Tumor
1.2
425
Tumor
1.2
1021
Tumor
1.2
743
Tumor
1.1
545
Tumor
1.1
777
Tumor
1.0
977
Tumor
1.0
523
Tumor
0.9
431
Tumor
0.7
497
Tumor
0.7
715
Tumor
0.7
975
Tumor
0.7
1031
Tumor
0.7
517
Tumor
0.7
1041
Tumor
0.6
483
Tumor
0.6
527
Tumor
0.6
271
Tumor
0.6
877
Tumor
0.6
1025
Tumor
0.5
515
Tumor
0.5
383
Tumor
0.5
867
Tumor
0.5
951
Tumor
0.5
741
Tumor
0.5
477
Tumor
0.5
135
Tumor
0.5
415
Tumor
0.5
921
Tumor
0.5
813
Tumor
0.5
911
Tumor
0.5
817
Tumor
0.5
161
Tumor
0.5
1027
Tumor
0.4
553
Tumor
0.4
737
Tumor
0.4
123
Tumor
0.4
297
Tumor
0.4
385
Tumor
0.4
567
Tumor
0.4
615
Tumor
0.4
447
Tumor
0.4
487
Tumor
0.4
635
Tumor
0.4
435
Tumor
0.4
873
Tumor
0.3
915
Tumor
0.3
443
Tumor
0.3
331
Tumor
0.3
191
Tumor
0.3
211
Tumor
0.3
473
Tumor
0.3
513
Tumor
0.3
963
Tumor
0.3
721
Tumor
0.3
533
Tumor
0.3
327
Tumor
0.2
785
Tumor
0.2
883
Tumor
0.2
923
Tumor
0.2
461
Tumor
0.2
685
Tumor
0.2
724
Normal
0.2
983
Tumor
0.2
881
Tumor
0.2
465
Tumor
0.2
493
Tumor
0.2
387
Tumor
0.2
481
Tumor
0.2
433
Tumor
0.2
1015
Tumor
0.2
823
Tumor
0.2
984
Normal
0.1
917
Tumor
0.1
451
Tumor
0.1
967
Tumor
0.1
865
Tumor
0.1
858
Normal
0.1
957
Tumor
0.1
955
Tumor
0.1
863
Tumor
0.1
357
Tumor
0.1
953
Tumor
0.1
535
Tumor
0.1
484
Normal
0.1
355
Tumor
0.1
395
Tumor
0.1
445
Tumor
0.1
665
Tumor
0.1
824
Normal
0.1
112
Tumor
0.1
814
Normal
0.0
488
Normal
0.0
463
Tumor
0.0
697
Tumor
0.0
185
Tumor
0.0
861
Tumor
0.0
393
Tumor
0.0
698
Normal
0.0
1014
Normal
0.0
537
Tumor
0.0
413
Tumor
0.0
471
Tumor
0.0
227
Tumor
0.0
954
Normal
0.0
538
Normal
0.0
285
Tumor
0.0
878
Normal
0.0
1028
Normal
0.0
786
Normal
0.0
882
Normal
0.0
938
Normal
0.0
1032
Normal
0.0
744
Normal
0.0
924
Normal
0.0
857
Tumor
0.0
213
Tumor
0.0
411
Tumor
0.0
554
Normal
0.0
563
Tumor
0.0
913
Tumor
0.0
557
Tumor
0.0
661
Tumor
0.0
714
Normal
0.0
818
Normal
0.0
746
Normal
0.0
756
Normal
0.0
723
Tumor
0.0
695
Tumor
0.0
778
Normal
0.0
686
Normal
-0.1
1045
Tumor
-0.1
922
Normal
-0.1
1022
Normal
-0.1
862
Normal
-0.1
965
Tumor
-0.1
462
Normal
-0.1
573
Tumor
-0.1
738
Normal
-0.1
866
Normal
-0.1
546
Normal
-0.1
944
Normal
-0.1
525
Tumor
-0.1
968
Normal
-0.1
981
Tumor
-0.1
426
Normal
-0.1
534
Normal
-0.1
716
Normal
-0.1
912
Normal
-0.1
298
Normal
-0.1
816
Normal
-0.1
524
Normal
-0.1
221
Tumor
-0.1
884
Normal
-0.1
571
Tumor
-0.1
518
Normal
-0.1
341
Tumor
-0.1
1013
Tumor
-0.1
964
Normal
-0.1
742
Normal
-0.1
277
Tumor
-0.1
498
Normal
-0.1
187
Tumor
-0.1
516
Normal
-0.1
982
Normal
-0.1
482
Normal
-0.2
356
Normal
-0.2
851
Tumor
-0.2
313
Tumor
-0.2
852
Normal
-0.2
572
Normal
-0.2
1046
Normal
-0.2
328
Normal
-0.2
958
Normal
-0.2
231
Tumor
-0.2
361
Tumor
-0.2
647
Tumor
-0.2
222
Normal
-0.2
966
Normal
-0.2
342
Normal
-0.2
172
Normal
-0.2
344
Normal
-0.2
926
Normal
-0.2
952
Normal
-0.2
978
Normal
-0.2
261
Tumor
-0.2
217
Tumor
-0.2
648
Normal
-0.2
528
Normal
-0.2
664
Normal
-0.2
367
Tumor
-0.2
412
Normal
-0.2
478
Normal
-0.2
147
Tumor
-0.2
268
Normal
-0.2
141
Tumor
-0.2
514
Normal
-0.2
332
Normal
-0.2
663
Tumor
-0.2
641
Tumor
-0.2
925
Tumor
-0.2
636
Normal
-0.2
448
Normal
-0.2
278
Normal
-0.2
976
Normal
-0.2
916
Normal
-0.2
196
Normal
-0.2
713
Tumor
-0.2
283
Tumor
-0.2
1016
Normal
-0.2
314
Normal
-0.2
368
Normal
-0.2
1043
Tumor
-0.2
492
Normal
-0.2
343
Tumor
-0.2
666
Normal
-0.2
568
Normal
-0.2
728
Normal
-0.2
267
Tumor
-0.2
376
Normal
-0.3
352
Normal
-0.3
868
Normal
-0.3
428
Normal
-0.3
423
Tumor
-0.3
464
Normal
-0.3
137
Tumor
-0.3
394
Normal
-0.3
628
Normal
-0.3
472
Normal
-0.3
212
Normal
-0.3
1026
Normal
-0.3
311
Tumor
-0.3
918
Normal
-0.3
113
Tumor
-0.3
616
Normal
-0.3
127
Tumor
-0.3
171
Tumor
-0.3
444
Normal
-0.3
414
Normal
-0.3
864
Normal
-0.3
375
Tumor
-0.3
558
Normal
-0.3
671
Tumor
-0.3
257
Tumor
-0.3
148
Normal
-0.3
696
Normal
-0.3
142
Normal
-0.3
722
Normal
-0.3
286
Normal
-0.3
943
Tumor
-0.3
564
Normal
-0.3
436
Normal
-0.3
874
Normal
-0.3
432
Normal
-0.3
421
Tumor
-0.3
228
Normal
-0.3
364
Normal
-0.3
727
Tumor
-0.3
424
Normal
-0.3
218
Normal
-0.3
662
Normal
-0.3
494
Normal
-0.3
162
Normal
-0.4
467
Tumor
-0.4
214
Normal
-0.4
474
Normal
-0.4
132
Normal
-0.4
388
Normal
-0.4
618
Normal
-0.4
365
Tumor
-0.4
392
Normal
-0.4
452
Normal
-0.4
536
Normal
-0.4
351
Tumor
-0.4
446
Normal
-0.4
416
Normal
-0.4
672
Normal
-0.4
466
Normal
-0.4
145
Tumor
-0.4
384
Normal
-0.4
914
Normal
-0.4
358
Normal
-0.4
232
Normal
-0.4
284
Normal
-0.4
456
Normal
-0.4
755
Tumor
-0.4
136
Normal
-0.4
258
Normal
-0.4
422
Normal
-0.4
223
Tumor
-0.4
396
Normal
-0.4
574
Normal
-0.4
956
Normal
-0.4
1044
Normal
-0.4
1042
Normal
-0.4
114
Normal
-0.4
186
Normal
-0.4
526
Normal
-0.4
386
Normal
-0.4
224
Normal
-0.4
128
Normal
-0.4
617
Tumor
-0.5
434
Normal
-0.5
312
Normal
-0.5
354
Normal
-0.5
146
Normal
-0.5
362
Normal
-0.5
363
Tumor
-0.5
366
Normal
-0.5
192
Normal
-0.5
111
Normal
-0.5
195
Tumor
-0.5
138
Normal
-0.5
627
Tumor
-0.5
491
Tumor
-0.5
124
Normal
-0.5
188
Normal
-0.5
272
Normal
-0.5
468
Normal
-0.5
262
Normal
-0.6
391
Tumor
-0.6
815
Tumor
-0.6
745
Tumor
-0.6
642
Normal
-0.7
126
Normal
-0.7
937
Tumor
-0.7
353
Tumor
-0.7
125
Tumor
-0.8
455
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.