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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CRABP2 is not prognostic in Ovary Serous Cystadenocarcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
689.0
Number of samples
349
Samples
Sample
Description
TPM
TCGA-13-1512-01A
0 years, female, white, stage:Stage IIIC, alive, 442 days
5254.2
TCGA-25-2404-01A
0 years, female, american indian or alaska native, stage:Stage IIIC, dead, 883 days
4017.6
TCGA-59-2348-01A
0 years, female, white, stage:Stage IIIC, alive, 5481 days
3917.9
TCGA-24-1104-01A
0 years, female, white, stage:Stage IV, dead, 1933 days
3365.5
TCGA-13-0891-01A
0 years, female, white, stage:Stage IV, dead, 3128 days
3240.6
TCGA-23-1107-01A
0 years, female, white, stage:Stage IV, dead, 9 days
2934.0
TCGA-24-1435-01A
0 years, female, white, stage:Stage IIIC, dead, 1324 days
2900.4
TCGA-09-2051-01A
0 years, female, white, stage:Stage IIIC, alive, 1919 days
2591.8
TCGA-04-1365-01A
0 years, female, white, stage:Stage IIIB, alive, 947 days
2245.8
TCGA-04-1536-01A
0 years, female, black or african american, stage:Stage IV, dead, 885 days
2043.1
TCGA-24-1557-01A
0 years, female, white, stage:Stage IIIC, dead, 1213 days
2021.4
TCGA-09-0369-01A
0 years, female, white, stage:Stage IIIC, dead, 1082 days
1957.4
TCGA-10-0933-01A
0 years, female, white, stage:Stage IIIC, dead, 446 days
1914.6
TCGA-29-2428-01A
0 years, female, white, stage:Stage IIIC, alive, 1372 days
1887.9
TCGA-13-0897-01A
0 years, female, white, stage:Stage IIIC, dead, 2182 days
1822.4
TCGA-13-1488-01A
0 years, female, white, stage:Stage IV, dead, 2154 days
1806.0
TCGA-25-1313-01A
0 years, female, white, stage:Stage IV, dead, 820 days
1775.7
TCGA-04-1651-01A
0 years, female, white, stage:Stage IIIC, dead, 1102 days
1763.2
TCGA-25-1635-01A
0 years, female, white, stage:Stage IIIC, dead, 1583 days
1721.5
TCGA-61-2009-01A
0 years, female, white, stage:Stage IIIC, alive, 1212 days
1705.2
TCGA-24-1427-01A
0 years, female, stage:Stage IIIC, alive, 147 days
1699.4
TCGA-29-1770-01A
0 years, female, white, stage:Stage IIIC, alive, 741 days
1692.5
TCGA-23-2078-01A
0 years, female, white, stage:Stage IIIC, alive, 2661 days
1680.4
TCGA-29-1784-01A
0 years, female, white, stage:Stage IIIC, alive, 163 days
1680.0
TCGA-24-1924-01A
0 years, female, white, stage:Stage IIIC, dead, 919 days
1662.0
TCGA-29-1769-01A
0 years, female, white, stage:Stage IIIC, alive, 699 days
1544.0
TCGA-04-1341-01A
0 years, female, white, stage:'--, alive, 33 days
1540.8
TCGA-20-1682-01A
0 years, female, white, stage:Stage IIIC, alive, 837 days
1514.3
TCGA-13-0725-01A
0 years, female, white, stage:Stage IIIC, dead, 377 days
1504.9
TCGA-24-1847-01A
0 years, female, white, stage:Stage IV, alive, 343 days
1498.5
TCGA-61-2101-01A
0 years, female, white, stage:Stage IIIC, dead, 1688 days
1469.2
TCGA-24-1424-01A
0 years, female, white, stage:Stage IIIC, alive, 183 days
1433.0
TCGA-13-1499-01A
0 years, female, white, stage:Stage IIIC, alive, 3500 days
1430.9
TCGA-09-2048-01A
0 years, female, white, stage:Stage IIIC, dead, 138 days
1416.0
TCGA-31-1950-01A
0 years, female, white, stage:Stage IIIC, alive, 571 days
1398.3
TCGA-57-1993-01A
0 years, female, white, stage:Stage IIIC, alive, 763 days
1379.9
TCGA-23-2077-01A
0 years, female, white, stage:Stage IIIC, alive, 3525 days
1370.1
TCGA-13-1501-01A
0 years, female, white, stage:Stage IV, dead, 1314 days
1367.5
TCGA-61-1725-01A
0 years, female, white, stage:Stage IIIC, alive, 956 days
1351.0
TCGA-57-1582-01A
0 years, female, white, stage:Stage IIIC, dead, 731 days
1339.1
TCGA-09-1666-01A
0 years, female, white, stage:Stage IIIC, alive, 1752 days
1322.1
TCGA-25-1326-01A
0 years, female, white, stage:Stage IIIC, dead, 1249 days
1302.8
TCGA-61-2102-01A
0 years, female, white, stage:Stage IIIC, dead, 197 days
1290.7
TCGA-29-1693-01A
0 years, female, white, stage:Stage IIIC, alive, 3096 days
1289.3
TCGA-09-2045-01A
0 years, female, asian, stage:Stage IV, dead, 1069 days
1271.5
TCGA-13-0911-01A
0 years, female, white, stage:Stage IV, dead, 1355 days
1269.7
TCGA-25-1316-01A
0 years, female, white, stage:Stage IIIC, dead, 1279 days
1267.6
TCGA-24-1417-01A
0 years, female, white, stage:Stage IV, alive, 238 days
1253.3
TCGA-13-1489-01A
0 years, female, white, stage:Stage IIIC, dead, 2553 days
1239.7
TCGA-24-1546-01A
0 years, female, white, stage:Stage IIIC, dead, 1955 days
1230.0
TCGA-23-1027-01A
0 years, female, white, stage:Stage IIIC, dead, 976 days
1224.6
TCGA-23-1122-01A
0 years, female, white, stage:Stage IIIC, dead, 1189 days
1211.9
TCGA-59-2354-01A
0 years, female, white, stage:Stage IIIC, dead, 1046 days
1195.1
TCGA-25-1321-01A
0 years, female, white, stage:Stage IIIC, dead, 1033 days
1143.5
TCGA-24-2036-01A
0 years, female, white, stage:Stage IIIA, dead, 1947 days
1131.3
TCGA-23-1119-01A
0 years, female, white, stage:Stage IIIC, alive, 3953 days
1129.4
TCGA-23-2084-01A
0 years, female, white, stage:Stage IV, dead, 1516 days
1120.2
TCGA-04-1655-01A
0 years, female, white, stage:Stage IIIB, dead, 1380 days
1108.1
TCGA-04-1356-01A
0 years, female, white, stage:Stage IIC, dead, 1499 days
1097.8
TCGA-36-1576-01A
0 years, female, stage:Stage IIIC, alive, 915 days
1073.0
TCGA-61-2008-01A
0 years, female, asian, stage:Stage IIC, alive, 932 days
1064.5
TCGA-24-1928-01A
0 years, female, white, stage:Stage IIIC, dead, 336 days
1061.4
TCGA-24-1565-01A
0 years, female, white, stage:Stage IIIC, dead, 312 days
1059.2
TCGA-61-1728-01A
0 years, female, white, stage:Stage IV, alive, 848 days
1044.5
TCGA-29-1766-01A
0 years, female, white, stage:Stage IIIC, dead, 1199 days
1043.1
TCGA-61-1918-01A
0 years, female, white, stage:Stage IV, dead, 479 days
1038.2
TCGA-24-2035-01A
0 years, female, white, stage:Stage IIIC, dead, 857 days
1038.2
TCGA-29-1774-01A
0 years, female, white, stage:Stage IIIC, alive, 527 days
1013.5
TCGA-25-2392-01A
0 years, female, white, stage:Stage IV, dead, 31 days
1000.3
TCGA-61-1914-01A
0 years, female, stage:Stage IIIC, alive, 1722 days
996.2
TCGA-04-1338-01A
0 years, female, white, stage:Stage IIIC, alive, 1418 days
995.5
TCGA-57-1583-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 346 days
986.2
TCGA-24-1930-01A
0 years, female, white, stage:Stage IIIC, dead, 2467 days
982.0
TCGA-24-2298-01A
0 years, female, white, stage:Stage IIIC, dead, 1620 days
980.6
TCGA-25-1632-01A
0 years, female, white, stage:Stage IV, dead, 1799 days
972.3
TCGA-25-1877-01A
0 years, female, white, stage:Stage IIIC, dead, 730 days
965.8
TCGA-23-1120-01A
0 years, female, white, stage:Stage IIIC, alive, 130 days
965.5
TCGA-30-1892-01A
0 years, female, white, stage:Stage IIIC, dead, 1484 days
962.9
TCGA-13-1405-01A
0 years, female, white, stage:Stage IV, dead, 868 days
950.9
TCGA-13-0727-01A
0 years, female, white, stage:Stage IIIC, dead, 462 days
947.5
TCGA-24-1552-01A
0 years, female, white, stage:Stage IIIC, dead, 1259 days
939.7
TCGA-24-0968-01A
0 years, female, white, stage:Stage IIIC, dead, 598 days
936.8
TCGA-29-1781-01A
0 years, female, white, stage:Stage IIIC, alive, 255 days
934.3
TCGA-13-0886-01A
0 years, female, white, stage:Stage IIIC, alive, 4665 days
933.6
TCGA-25-1318-01A
0 years, female, white, stage:Stage IIIC, dead, 1064 days
916.3
TCGA-30-1891-01A
0 years, female, white, stage:Stage IIIC, dead, 914 days
912.7
TCGA-25-1320-01A
0 years, female, white, stage:Stage IIIC, dead, 1155 days
909.6
TCGA-20-1687-01A
0 years, female, white, stage:Stage IV, alive, 81 days
906.9
TCGA-13-1485-01A
0 years, female, white, stage:Stage IV, dead, 629 days
890.7
TCGA-24-1844-01A
0 years, female, white, stage:Stage IIIC, alive, 113 days
884.0
TCGA-61-1724-01A
0 years, female, white, stage:Stage IIIC, dead, 637 days
875.5
TCGA-24-1416-01A
0 years, female, white, stage:Stage IV, alive, 194 days
867.4
TCGA-13-1495-01A
0 years, female, white, stage:Stage IIIC, dead, 2749 days
865.9
TCGA-09-1669-01A
0 years, female, white, stage:Stage IIIA, alive, 928 days
862.0
TCGA-36-1570-01A
0 years, female, white, stage:Stage IIIC, alive, 655 days
854.2
TCGA-13-0885-01A
0 years, female, white, stage:Stage IIIC, alive, 3388 days
849.6
TCGA-29-1696-01A
0 years, female, white, stage:Stage IIIC, dead, 1032 days
841.5
TCGA-24-1464-01A
0 years, female, white, stage:Stage IIIC, dead, 379 days
841.0
TCGA-13-1409-01A
0 years, female, white, stage:Stage IIIC, dead, 1742 days
836.8
TCGA-29-1694-01A
0 years, female, white, stage:Stage IIIC, dead, 1187 days
830.4
TCGA-25-1329-01A
0 years, female, white, stage:Stage IIIC, dead, 457 days
824.1
TCGA-24-1603-01A
0 years, female, white, stage:Stage IIIB, dead, 2742 days
815.8
TCGA-29-1763-01A
0 years, female, black or african american, stage:Stage IIC, alive, 2032 days
815.7
TCGA-13-1487-01A
0 years, female, white, stage:Stage IV, dead, 681 days
800.8
TCGA-59-2355-01A
0 years, female, white, stage:Stage IV, dead, 65 days
800.5
TCGA-61-2002-01A
0 years, female, white, stage:Stage IIIC, alive, 547 days
799.0
TCGA-30-1857-01A
0 years, female, white, stage:Stage IV, dead, 8 days
797.7
TCGA-29-1691-01A
0 years, female, white, stage:Stage IIIC, dead, 1470 days
786.4
TCGA-61-1733-01A
0 years, female, white, stage:Stage IIIC, alive, 967 days
780.6
TCGA-10-0937-01A
0 years, female, white, stage:Stage IIIC, dead, 608 days
778.2
TCGA-30-1860-01A
0 years, female, white, stage:Stage IIIC, dead, 1366 days
762.1
TCGA-04-1364-01A
0 years, female, white, stage:Stage IIIC, dead, 1024 days
754.9
TCGA-13-1483-01A
0 years, female, white, stage:Stage IIIC, dead, 895 days
743.7
TCGA-30-1861-01A
0 years, female, white, stage:Stage IIIC, dead, 1058 days
741.7
TCGA-57-1586-01A
0 years, female, white, stage:Stage IIIC, alive, 679 days
732.8
TCGA-24-1850-01A
0 years, female, white, stage:Stage IIIC, alive, 168 days
724.8
TCGA-25-2042-01A
0 years, female, american indian or alaska native, stage:Stage IIIC, dead, 396 days
724.4
TCGA-25-1317-01A
0 years, female, white, stage:Stage IIIC, dead, 61 days
701.3
TCGA-59-2363-01A
0 years, female, asian, stage:Stage IIIA, alive, 165 days
699.4
TCGA-13-0906-01A
0 years, female, white, stage:Stage IIIC, alive, 3619 days
696.0
TCGA-61-2098-01A
0 years, female, white, stage:Stage IIIC, alive, 1993 days
694.8
TCGA-23-1123-01A
0 years, female, white, stage:Stage IIIC, dead, 1018 days
688.2
TCGA-09-0367-01A
0 years, female, native hawaiian or other pacific islander, stage:Stage IIIC, dead, 547 days
682.6
TCGA-25-2409-01A
0 years, female, white, stage:Stage IV, dead, 821 days
680.3
TCGA-13-0726-01A
0 years, female, white, stage:Stage IIIC, dead, 949 days
679.0
TCGA-23-1110-01A
0 years, female, white, stage:Stage IIIC, alive, 1658 days
672.5
TCGA-36-1568-01A
0 years, female, stage:Stage IIIC, alive, 875 days
670.0
TCGA-61-2104-01A
0 years, female, white, stage:Stage IIC, alive, 2338 days
669.8
TCGA-25-1628-01A
0 years, female, white, stage:Stage IIIC, dead, 627 days
669.4
TCGA-24-0982-01A
0 years, female, white, stage:Stage IIIC, dead, 679 days
668.1
TCGA-23-1113-01A
0 years, female, white, stage:Stage IV, dead, 949 days
662.3
TCGA-04-1542-01A
0 years, female, white, stage:Stage IIIB, dead, 2561 days
661.3
TCGA-24-2281-01A
0 years, female, white, stage:Stage IIA, alive, 1357 days
661.0
TCGA-24-1103-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1646 days
653.7
TCGA-24-1105-01A
0 years, female, white, stage:Stage IIIC, dead, 1442 days
651.5
TCGA-61-1907-01A
0 years, female, white, stage:Stage IIIC, alive, 952 days
650.0
TCGA-13-0924-01A
0 years, female, white, stage:Stage IV, alive, 2614 days
649.8
TCGA-24-2261-01A
0 years, female, white, stage:Stage IIIC, dead, 24 days
644.4
TCGA-24-1553-01A
0 years, female, white, stage:Stage IIIB, dead, 1767 days
642.3
TCGA-04-1343-01A
0 years, female, white, stage:Stage IV, dead, 361 days
639.5
TCGA-13-0883-01A
0 years, female, white, stage:Stage IIIC, dead, 2097 days
637.1
TCGA-04-1362-01A
0 years, female, white, stage:Stage IIC, dead, 1348 days
636.1
TCGA-13-1492-01A
0 years, female, white, stage:Stage IIIC, dead, 3819 days
634.3
TCGA-24-2297-01A
0 years, female, white, stage:Stage IIIC, dead, 1699 days
630.8
TCGA-29-1688-01A
0 years, female, white, stage:Stage IIIC, dead, 2400 days
628.5
TCGA-29-1762-01A
0 years, female, white, stage:Stage IV, dead, 2634 days
626.0
TCGA-13-1498-01A
0 years, female, white, stage:Stage IIIC, dead, 2012 days
602.9
TCGA-25-1633-01A
0 years, female, white, stage:Stage IIIC, dead, 1891 days
599.4
TCGA-61-1919-01A
0 years, female, white, stage:Stage IIIC, dead, 1161 days
593.5
TCGA-25-1323-01A
0 years, female, white, stage:Stage IIIC, dead, 395 days
592.9
TCGA-10-0928-01A
0 years, female, white, stage:Stage IIIC, dead, 563 days
589.6
TCGA-29-1701-01A
0 years, female, white, stage:Stage IIIC, dead, 515 days
587.5
TCGA-30-1714-01A
0 years, female, white, stage:Stage IV, dead, 1158 days
585.8
TCGA-29-1705-01A
0 years, female, white, stage:Stage IIIC, dead, 555 days
585.5
TCGA-31-1946-01A
0 years, female, stage:Stage IIIC, alive, 918 days
578.8
TCGA-57-1585-01A
0 years, female, white, stage:Stage IIIC, dead, 53 days
575.8
TCGA-29-1690-01A
0 years, female, white, stage:Stage IIIC, dead, 1448 days
575.7
TCGA-29-2425-01A
0 years, female, white, stage:Stage IIIC, alive, 1977 days
573.3
TCGA-24-1550-01A
0 years, female, white, stage:Stage IIIC, dead, 1249 days
566.5
TCGA-24-1616-01A
0 years, female, white, stage:Stage IIIC, dead, 1163 days
563.8
TCGA-13-0765-01A
0 years, female, white, stage:Stage IIIC, dead, 1389 days
560.6
TCGA-57-1994-01A
0 years, female, white, stage:'--, alive, 761 days
559.6
TCGA-24-1423-01A
0 years, female, white, stage:Stage IIIC, alive, 190 days
556.8
TCGA-25-1631-01A
0 years, female, white, stage:Stage IIIC, dead, 9 days
556.7
TCGA-09-1670-01A
0 years, female, white, stage:Stage IIIA, alive, 547 days
548.1
TCGA-10-0931-01A
0 years, female, white, stage:Stage IIIC, dead, 1000 days
541.5
TCGA-61-1911-01A
0 years, female, white, stage:Stage IIA, alive, 1293 days
540.1
TCGA-29-1777-01A
0 years, female, white, stage:Stage IIIC, alive, 374 days
534.5
TCGA-13-1509-01A
0 years, female, white, stage:Stage IV, alive, 2438 days
534.4
TCGA-24-1428-01A
0 years, female, white, stage:Stage IIIC, alive, 529 days
531.1
TCGA-59-2350-01A
0 years, female, stage:Stage IV, dead, 679 days
528.6
TCGA-31-1959-01A
0 years, female, white, stage:Stage IV, alive, 67 days
522.7
TCGA-24-2033-01A
0 years, female, white, stage:Stage IIIC, dead, 562 days
518.7
TCGA-24-2293-01A
0 years, female, white, stage:'--, dead, 506 days
516.6
TCGA-13-1506-01A
0 years, female, white, stage:Stage IIIC, dead, 1039 days
516.1
TCGA-25-1322-01A
0 years, female, white, stage:Stage IV, dead, 91 days
512.2
TCGA-10-0938-01A
0 years, female, white, stage:Stage IIIC, dead, 636 days
511.3
TCGA-24-1846-01A
0 years, female, stage:Stage IIIC, alive, 133 days
507.7
TCGA-13-0920-01A
0 years, female, white, stage:Stage IIIC, dead, 1484 days
504.1
TCGA-29-2427-01A
0 years, female, white, stage:Stage IIIC, alive, 1900 days
499.6
TCGA-31-1956-01A
0 years, female, white, stage:Stage IIIB, alive, 1342 days
493.7
TCGA-59-2352-01A
0 years, female, white, stage:Stage IIIC, dead, 286 days
492.6
TCGA-24-0966-01A
0 years, female, black or african american, stage:Stage IIIC, alive, 232 days
489.7
TCGA-61-2097-01A
0 years, female, white, stage:Stage IIC, alive, 1844 days
488.5
TCGA-09-0366-01A
0 years, female, white, stage:Stage IIIC, dead, 1757 days
488.3
TCGA-04-1530-01A
0 years, female, white, stage:Stage IIIC, dead, 3622 days
487.8
TCGA-25-1634-01A
0 years, female, white, stage:Stage IIIC, dead, 1091 days
486.3
TCGA-25-1626-01A
0 years, female, white, stage:Stage IIIC, dead, 518 days
485.8
TCGA-61-2012-01A
0 years, female, white, stage:Stage IIC, alive, 932 days
485.6
TCGA-31-1944-01A
0 years, female, white, stage:Stage IIIC, alive, 1386 days
484.9
TCGA-13-1407-01A
0 years, female, white, stage:Stage IIIC, alive, 2534 days
483.9
TCGA-24-1604-01A
0 years, female, white, stage:Stage IIIC, dead, 2688 days
480.2
TCGA-13-0800-01A
0 years, female, white, stage:Stage IIIC, alive, 2661 days
472.4
TCGA-24-1560-01A
0 years, female, white, stage:Stage IIIC, dead, 1341 days
471.3
TCGA-13-1477-01A
0 years, female, white, stage:Stage IV, dead, 1662 days
470.2
TCGA-30-1718-01A
0 years, female, white, stage:Stage IIIC, dead, 1579 days
466.1
TCGA-29-1776-01A
0 years, female, black or african american, stage:Stage IIIC, alive, 360 days
465.9
TCGA-24-2027-01A
0 years, female, white, stage:Stage IV, dead, 3337 days
464.0
TCGA-61-1741-01A
0 years, female, white, stage:Stage IIIB, dead, 1024 days
456.9
TCGA-24-2289-01A
0 years, female, white, stage:Stage IV, dead, 2049 days
456.8
TCGA-24-1413-01A
0 years, female, white, stage:Stage IIIC, alive, 192 days
456.6
TCGA-13-0730-01A
0 years, female, white, stage:Stage IIIC, dead, 542 days
454.4
TCGA-23-1118-01A
0 years, female, white, stage:Stage IIIC, alive, 2616 days
447.8
TCGA-30-1866-01A
0 years, female, white, stage:Stage IV, dead, 1114 days
447.6
TCGA-04-1331-01A
0 years, female, white, stage:Stage IIIC, dead, 1336 days
446.9
TCGA-23-1023-01A
0 years, female, white, stage:Stage IIIC, alive, 1233 days
445.2
TCGA-25-2401-01A
0 years, female, white, stage:Stage IIIC, dead, 90 days
440.0
TCGA-25-1315-01A
0 years, female, white, stage:Stage IIIC, dead, 1583 days
429.6
TCGA-36-1574-01A
0 years, female, asian, stage:Stage IIIC, alive, 686 days
424.5
TCGA-29-2414-01A
0 years, female, white, stage:Stage IIIC, dead, 2621 days
422.7
TCGA-13-0714-01A
0 years, female, white, stage:Stage IV, dead, 189 days
414.8
TCGA-04-1350-01A
0 years, female, white, stage:Stage IIIC, dead, 1946 days
412.4
TCGA-24-2271-01A
0 years, female, asian, stage:Stage IIIC, dead, 962 days
412.3
TCGA-13-1408-01A
0 years, female, white, stage:Stage IIIC, dead, 1680 days
411.2
TCGA-13-1403-01A
0 years, female, white, stage:Stage IIIC, dead, 2345 days
410.1
TCGA-13-0797-01A
0 years, female, white, stage:Stage IIIC, alive, 2121 days
408.6
TCGA-61-1737-01A
0 years, female, white, stage:Stage IV, alive, 1364 days
407.8
TCGA-04-1514-01A
0 years, female, white, stage:Stage IIIA, dead, 1720 days
406.2
TCGA-24-2280-01A
0 years, female, white, stage:Stage IIIC, alive, 2143 days
394.8
TCGA-04-1361-01A
0 years, female, white, stage:Stage IIIB, alive, 989 days
387.2
TCGA-25-2396-01A
0 years, female, white, stage:Stage IIIC, dead, 92 days
384.7
TCGA-61-2109-01A
0 years, female, white, stage:Stage IIIC, dead, 629 days
383.6
TCGA-13-1497-01A
0 years, female, white, stage:Stage IIIC, alive, 3871 days
381.1
TCGA-31-1953-01A
0 years, female, asian, stage:Stage IIIC, alive, 204 days
380.1
TCGA-23-1028-01A
0 years, female, white, stage:Stage IIIC, alive, 1503 days
377.2
TCGA-13-0887-01A
0 years, female, white, stage:Stage IIIC, dead, 2028 days
374.3
TCGA-24-1430-01A
0 years, female, white, stage:Stage IIIC, dead, 863 days
372.2
TCGA-24-1544-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 820 days
370.3
TCGA-30-1853-01A
0 years, female, white, stage:Stage IIIC, dead, 1103 days
370.0
TCGA-24-1558-01A
0 years, female, white, stage:Stage IIIC, dead, 594 days
366.8
TCGA-36-1571-01A
0 years, female, white, stage:Stage IIIB, dead, 695 days
366.7
TCGA-04-1519-01A
0 years, female, stage:Stage IIIC, alive, 24 days
365.5
TCGA-24-1434-01A
0 years, female, white, stage:Stage IIIC, dead, 568 days
363.3
TCGA-29-1697-01A
0 years, female, white, stage:Stage IIIC, dead, 949 days
362.0
TCGA-13-0923-01A
0 years, female, white, stage:Stage IIIC, alive, 2547 days
353.2
TCGA-25-2399-01A
0 years, female, white, stage:Stage IIIC, dead, 608 days
350.3
TCGA-59-A5PD-01A
0 years, female, black or african american, stage:Stage IC, dead, 624 days
350.2
TCGA-04-1648-01A
0 years, female, white, stage:Stage IIIC, dead, 871 days
347.6
TCGA-25-1312-01A
0 years, female, white, stage:Stage IV, dead, 31 days
347.1
TCGA-13-1410-01A
0 years, female, white, stage:Stage IV, alive, 2464 days
346.3
TCGA-23-1022-01A
0 years, female, white, stage:Stage IIIC, dead, 1511 days
344.5
TCGA-61-1900-01A
0 years, female, black or african american, stage:Stage IIIB, alive, 176 days
344.3
TCGA-36-1577-01A
0 years, female, asian, stage:Stage IIC, alive, 783 days
338.3
TCGA-24-2024-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1769 days
337.6
TCGA-25-1627-01A
0 years, female, white, stage:Stage IIIC, dead, 394 days
336.0
TCGA-36-1569-01A
0 years, female, white, stage:Stage IIIC, alive, 885 days
333.9
TCGA-25-2393-01A
0 years, female, white, stage:Stage IIIC, dead, 1157 days
330.0
TCGA-13-0795-01A
0 years, female, white, stage:Stage IIIC, dead, 619 days
322.6
TCGA-13-0720-01A
0 years, female, white, stage:Stage IIIC, dead, 1355 days
322.1
TCGA-59-2351-01A
0 years, female, white, stage:Stage IIIC, alive, 3532 days
321.5
TCGA-30-1862-01A
0 years, female, white, stage:Stage IV, dead, 186 days
319.5
TCGA-29-A5NZ-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1088 days
318.2
TCGA-24-0979-01A
0 years, female, white, stage:Stage IV, dead, 1264 days
317.8
TCGA-25-2398-01A
0 years, female, white, stage:Stage IIIC, dead, 1369 days
310.5
TCGA-23-1030-01A
0 years, female, white, stage:Stage IIIC, alive, 886 days
310.0
TCGA-13-1505-01A
0 years, female, white, stage:Stage IIIC, alive, 1998 days
307.5
TCGA-61-2088-01A
0 years, female, white, stage:Stage IIIC, alive, 145 days
307.3
TCGA-23-1109-01A
0 years, female, white, stage:Stage IIIC, dead, 1562 days
305.7
TCGA-24-2288-01A
0 years, female, white, stage:Stage IIIC, dead, 25 days
305.2
TCGA-20-0991-01A
0 years, female, white, stage:Stage IIB, alive, 797 days
298.7
TCGA-25-1319-01A
0 years, female, white, stage:Stage IIIC, dead, 1977 days
296.1
TCGA-04-1332-01A
0 years, female, white, stage:Stage IIIC, dead, 1247 days
289.2
TCGA-24-2254-01A
0 years, female, white, stage:Stage IIIC, dead, 1736 days
286.7
TCGA-24-1469-01A
0 years, female, white, stage:Stage IIIC, alive, 277 days
282.5
TCGA-24-1563-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1451 days
282.1
TCGA-25-2400-01A
0 years, female, white, stage:Stage IIIC, dead, 1278 days
280.9
TCGA-24-1425-01A
0 years, female, white, stage:Stage IIIC, alive, 181 days
277.7
TCGA-OY-A56Q-01A
0 years, female, black or african american, stage:Stage IIA, alive, 576 days
275.5
TCGA-09-2054-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 637 days
273.6
TCGA-24-1562-01A
0 years, female, white, stage:Stage IIIC, dead, 1384 days
273.4
TCGA-23-1024-01A
0 years, female, white, stage:Stage IV, alive, 468 days
271.7
TCGA-24-1419-01A
0 years, female, white, stage:Stage IIIC, alive, 239 days
266.6
TCGA-20-0987-01A
0 years, female, white, stage:Stage IIIC, dead, 701 days
264.8
TCGA-24-1567-01A
0 years, female, white, stage:Stage IIIB, dead, 524 days
260.0
TCGA-09-0364-01A
0 years, female, white, stage:Stage IIC, dead, 887 days
259.9
TCGA-61-2113-01A
0 years, female, white, stage:Stage IIC, dead, 676 days
259.8
TCGA-13-0888-01A
0 years, female, white, stage:Stage IIIC, dead, 2811 days
259.4
TCGA-04-1347-01A
0 years, female, white, stage:Stage IV, alive, 1919 days
254.1
TCGA-36-1580-01A
0 years, female, stage:Stage IIIC, dead, 737 days
248.6
TCGA-13-0724-01A
0 years, female, white, stage:Stage IV, dead, 83 days
245.8
TCGA-20-1683-01A
0 years, female, white, stage:Stage IIIC, alive, 772 days
243.1
TCGA-24-1467-01A
0 years, female, white, stage:Stage IIIC, dead, 3224 days
242.0
TCGA-61-2111-01A
0 years, female, white, stage:Stage IV, alive, 3825 days
239.8
TCGA-25-1630-01A
0 years, female, white, stage:Stage IIIC, dead, 1162 days
236.4
TCGA-5X-AA5U-01A
0 years, female, black or african american, stage:Stage IIC, alive, 361 days
236.3
TCGA-24-1923-01A
0 years, female, white, stage:Stage IIIC, dead, 690 days
235.7
TCGA-57-1584-01A
0 years, female, white, stage:Stage IIIC, alive, 643 days
232.0
TCGA-24-2290-01A
0 years, female, white, stage:Stage IIIC, dead, 1102 days
230.4
TCGA-13-1510-01A
0 years, female, white, stage:Stage IIIC, dead, 1359 days
228.7
TCGA-13-1511-01A
0 years, female, asian, stage:Stage IV, dead, 1650 days
227.1
TCGA-61-2110-01A
0 years, female, white, stage:Stage IIIC, dead, 1354 days
224.3
TCGA-09-1662-01A
0 years, female, white, stage:Stage IV, dead, 2717 days
220.2
TCGA-VG-A8LO-01A
0 years, female, black or african american, stage:Stage IV, dead, 24 days
207.4
TCGA-13-0804-01A
0 years, female, white, stage:Stage IIIC, dead, 1073 days
205.7
TCGA-24-1422-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 23 days
202.4
TCGA-13-1411-01A
0 years, female, white, stage:Stage IIIC, dead, 531 days
198.2
TCGA-09-1673-01A
0 years, female, white, stage:Stage IV, alive, 92 days
196.6
TCGA-24-1842-01A
0 years, female, white, stage:Stage IIIC, alive, 253 days
189.0
TCGA-29-1768-01A
0 years, female, white, stage:Stage IV, dead, 952 days
187.2
TCGA-61-1995-01A
0 years, female, white, stage:Stage IIIC, alive, 61 days
187.0
TCGA-61-2003-01A
0 years, female, white, stage:Stage IIIC, alive, 122 days
175.7
TCGA-29-1783-01A
0 years, female, white, stage:Stage IIIC, alive, 220 days
174.9
TCGA-13-1496-01A
0 years, female, white, stage:Stage IIIC, dead, 129 days
174.5
TCGA-36-1581-01A
0 years, female, white, stage:Stage IIC, alive, 751 days
170.6
TCGA-31-1951-01A
0 years, female, white, stage:Stage IIIC, alive, 684 days
168.6
TCGA-25-1623-01A
0 years, female, white, stage:Stage IV, dead, 565 days
167.6
TCGA-24-1426-01A
0 years, female, white, stage:Stage IIIC, alive, 163 days
166.7
TCGA-29-1778-01A
0 years, female, white, stage:Stage IIIC, alive, 454 days
165.0
TCGA-61-2000-01A
0 years, female, white, stage:Stage IIIC, alive, 441 days
164.4
TCGA-24-1551-01A
0 years, female, white, stage:Stage IIIC, dead, 1579 days
153.4
TCGA-13-0766-01A
0 years, female, white, stage:Stage IIIC, dead, 1725 days
145.7
TCGA-25-1870-01A
0 years, female, white, stage:Stage IIIC, dead, 455 days
144.1
TCGA-13-0762-01A
0 years, female, white, stage:Stage IIIC, alive, 3400 days
143.9
TCGA-29-1703-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1815 days
142.1
TCGA-13-0768-01A
0 years, female, white, stage:Stage IIIC, dead, 1784 days
138.5
TCGA-61-1998-01A
0 years, female, white, stage:Stage IIIC, alive, 168 days
138.0
TCGA-29-1710-01A
0 years, female, white, stage:Stage IIIC, dead, 951 days
137.3
TCGA-24-1845-01A
0 years, female, white, stage:Stage IIIC, alive, 116 days
133.5
TCGA-24-1418-01A
0 years, female, white, stage:Stage IIIC, alive, 243 days
123.3
TCGA-24-1843-01A
0 years, female, white, stage:Stage IIIC, alive, 106 days
120.5
TCGA-61-1738-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1089 days
117.5
TCGA-23-1809-01A
0 years, female, white, stage:Stage IIC, alive, 16 days
109.2
TCGA-24-2267-01A
0 years, female, white, stage:Stage IIB, dead, 1446 days
108.5
TCGA-23-1116-01A
0 years, female, white, stage:Stage IIIC, dead, 592 days
98.0
TCGA-23-1111-01A
0 years, female, white, stage:Stage IIIC, alive, 98 days
96.9
TCGA-13-1404-01A
0 years, female, white, stage:Stage IIIC, alive, 2469 days
96.8
TCGA-29-1785-01A
0 years, female, white, stage:Stage IIIC, dead, 1104 days
91.5
TCGA-24-1549-01A
0 years, female, white, stage:Stage IIIB, dead, 1721 days
88.9
TCGA-13-A5FT-01A
0 years, female, black or african american, stage:Stage IIIC, alive, 2143 days
88.7
TCGA-10-0927-01A
0 years, female, stage:Stage IIIC, dead, 2490 days
87.2
TCGA-61-1910-01A
0 years, female, white, stage:Stage IIC, alive, 1127 days
83.6
TCGA-24-1474-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 676 days
81.4
TCGA-WR-A838-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 304 days
76.7
TCGA-24-2023-01A
0 years, female, white, stage:Stage IIIA, dead, 1364 days
72.5
TCGA-20-1686-01A
0 years, female, white, stage:Stage IIIC, alive, 89 days
70.8
TCGA-13-0916-01A
0 years, female, white, stage:Stage IIIC, alive, 1785 days
70.6
TCGA-13-2060-01A
0 years, female, white, stage:Stage IV, alive, 2369 days
66.4
TCGA-29-1695-01A
0 years, female, white, stage:Stage IIIC, dead, 1229 days
63.0
TCGA-29-1711-01A
0 years, female, black or african american, stage:Stage IIIC, alive, 1053 days
60.5
TCGA-29-1761-01A
0 years, female, asian, stage:Stage IIIC, dead, 528 days
60.1
TCGA-13-1507-01A
0 years, female, white, stage:Stage IIIC, dead, 1993 days
54.0
TCGA-24-1431-01A
0 years, female, white, stage:Stage IIIC, dead, 583 days
48.4
TCGA-24-1471-01A
0 years, female, white, stage:Stage IIIC, alive, 36 days
37.9
TCGA-61-1721-01A
0 years, female, white, stage:Stage IV, alive, 338 days
26.8
TCGA-24-2020-01A
0 years, female, white, stage:Stage IIIC, dead, 4624 days
26.5
TCGA-25-1328-01A
0 years, female, white, stage:Stage IIIC, dead, 2009 days
17.1
TCGA-24-2026-01A
0 years, female, white, stage:Stage IIIC, dead, 1059 days
14.0
TCGA-24-2038-01A
0 years, female, white, stage:Stage IIIA, dead, 1354 days
12.6
TCGA-61-2092-01A
0 years, female, white, stage:Stage IIIC, alive, 1573 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CRABP2 is not prognostic in Ovary Serous Cystadenocarcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
411.2
Number of samples
81
Samples
Sample
Description
TPM
DO46392
0 years, female, NA, stage:III, dead, 628 days
1679.7
DO46448
0 years, female, NA, stage:III, dead, 654 days
1359.7
DO46581
0 years, female, NA, stage:III, dead, 408 days
1004.8
DO46551
0 years, female, NA, stage:III, dead, 1055 days
992.4
DO46390
0 years, female, NA, stage:III, dead, 374 days
992.0
DO46380
0 years, female, NA, stage:III, dead, 1423 days
990.8
DO46513
0 years, female, NA, stage:IV, dead, 1883 days
845.0
DO46538
0 years, female, NA, stage:III, dead, 1527 days
825.5
DO46378
0 years, female, NA, stage:III, alive, 843 days
769.2
DO46586
0 years, female, NA, stage:III, dead, 1019 days
649.2
DO46560
0 years, female, NA, stage:IV, dead, 286 days
643.8
DO46376
0 years, female, NA, stage:III, dead, 1430 days
630.4
DO46453
0 years, female, NA, stage:III, dead, 3294 days
615.1
DO46388
0 years, female, NA, stage:III, dead, 413 days
610.7
DO46346
0 years, female, NA, stage:III, dead, 1187 days
601.8
DO46325
0 years, female, NA, stage:III, dead, 477 days
594.1
DO46432
0 years, female, NA, stage:III, alive, 2218 days
591.2
DO46364
0 years, female, NA, stage:III, dead, 806 days
580.3
DO46354
0 years, female, NA, stage:III, dead, 843 days
567.8
DO46408
0 years, female, NA, stage:III, dead, 489 days
560.2
DO46368
0 years, female, NA, stage:III, dead, 2879 days
542.9
DO46336
0 years, female, NA, stage:IV, dead, 664 days
540.9
DO46344
0 years, female, NA, stage:III, dead, 642 days
501.7
DO46372
0 years, female, NA, stage:III, dead, 1326 days
487.4
DO46528
0 years, female, NA, stage:III, alive, 6139 days
485.3
DO46334
0 years, female, NA, stage:III, dead, 496 days
478.6
DO46458
0 years, female, NA, stage:IV, alive, 3787 days
466.8
DO46523
0 years, female, NA, stage:IV, alive, 1873 days
464.1
DO46493
0 years, female, NA, stage:IV, alive, 839 days
461.7
DO46340
0 years, female, NA, stage:III, dead, 616 days
456.9
DO46566
0 years, female, NA, stage:III, dead, 673 days
455.8
DO46597
0 years, female, NA, stage:III, dead, 393 days
449.1
DO46533
0 years, female, NA, stage:III, alive, 3667 days
447.2
DO46412
0 years, female, NA, stage:III, dead, 597 days
445.3
DO46463
0 years, female, NA, stage:III, dead, 2451 days
440.8
DO46546
0 years, female, NA, stage:III, dead, 1889 days
431.9
DO46330
0 years, female, NA, stage:III, dead, 684 days
408.5
DO46366
0 years, female, NA, stage:III, dead, 2054 days
408.4
DO46360
0 years, female, NA, stage:IV, dead, 1759 days
394.9
DO46396
0 years, female, NA, stage:III, dead, 583 days
394.7
DO46438
0 years, female, NA, stage:IV, alive, 2227 days
392.5
DO46561
0 years, female, NA, stage:III, dead, 195 days
386.8
DO46370
0 years, female, NA, stage:III, dead, 1727 days
379.6
DO46394
0 years, female, NA, stage:IV, dead, 1039 days
368.1
DO46576
0 years, female, NA, stage:III, alive, 133 days
345.1
DO46386
0 years, female, NA, stage:III, dead, 1162 days
342.5
DO46358
0 years, female, NA, stage:III, dead, 423 days
319.3
DO46348
0 years, female, NA, stage:IV, dead, 287 days
304.5
DO46508
0 years, female, NA, stage:III, dead, 2101 days
304.0
DO46443
0 years, female, NA, stage:III, dead, 2464 days
295.0
DO46588
0 years, female, NA, stage:III, dead, 438 days
282.4
DO46329
0 years, female, NA, stage:III, dead, 1699 days
278.9
DO46352
0 years, female, NA, stage:III, dead, 677 days
272.1
DO46342
0 years, female, NA, stage:III, dead, 1398 days
249.3
DO46436
0 years, female, NA, stage:III, alive, 3193 days
245.7
DO46331
0 years, female, NA, stage:III, dead, 612 days
242.8
DO46611
0 years, female, NA, stage:III, dead, 734 days
231.6
DO46374
0 years, female, NA, stage:III, dead, 1409 days
215.3
DO46350
0 years, female, NA, stage:III, dead, 886 days
210.9
DO46428
0 years, female, NA, stage:IV, alive, 2644 days
205.6
DO46333
0 years, female, NA, stage:III, dead, 359 days
194.0
DO46468
0 years, female, NA, stage:III, alive, 2776 days
193.7
DO46398
0 years, female, NA, stage:III, alive, 437 days
176.3
DO46568
0 years, female, NA, stage:III, dead, 320 days
171.0
DO46591
0 years, female, NA, stage:III, dead, 195 days
169.6
DO46328
0 years, female, NA, stage:III, dead, 972 days
169.0
DO46356
0 years, female, NA, stage:III, dead, 911 days
167.7
DO46332
0 years, female, NA, stage:III, dead, 689 days
135.6
DO46571
0 years, female, NA, stage:III, dead, 243 days
135.3
DO46402
0 years, female, NA, stage:III, dead, 511 days
133.2
DO46382
0 years, female, NA, stage:IV, dead, 311 days
103.5
DO46362
0 years, female, NA, stage:III, dead, 1639 days
83.0
DO46404
0 years, female, NA, stage:III, dead, 690 days
66.5
DO46338
0 years, female, NA, stage:III, dead, 596 days
58.9
DO46384
0 years, female, NA, stage:III, dead, 614 days
57.6
DO46400
0 years, female, NA, stage:III, dead, 719 days
54.0
DO46518
0 years, female, NA, stage:III, alive, 2960 days
33.0
DO46326
0 years, female, NA, stage:III, dead, 701 days
27.0
DO46327
0 years, female, NA, stage:III, dead, 184 days
21.1
DO46606
0 years, female, NA, stage:III, alive, 804 days
16.9
DO46602
0 years, female, NA, stage:III, dead, 205 days
8.8
Show allShow less
OVARY SEROUS CYSTADENOCARCINOMA - Protein relative expression (CPTAC)
Number of samples
108
Samples
Sample ID
Sample type
nRPX
5c3971ee-87c7-4dff-b66e-f18892_D2
Tumor
1.3
2dc28da8-7ff1-4b9b-b5bd-17cc25_D2
Tumor
1.1
558333b0-ea23-4303-9e3c-4932b1_D2
Tumor
0.9
8234f8ea-bdbd-45b0-bd0b-16f1e7_D2
Tumor
0.8
3a380577-c134-47ba-a1ce-988d7c_D2
Tumor
0.8
0cc794c3-5bf5-4621-b238-58a0f6_D2
Tumor
0.8
15524912-685a-47ce-a824-567848_D2
Tumor
0.7
76e77c6b-c80e-4391-bdbb-e1dcea_D2
Tumor
0.7
7069e990-4a4e-4984-a66d-4d835a_D2
Tumor
0.7
8d78194e-fbef-4819-a7b5-b73ae9_D2
Tumor
0.7
256ac9f5-1e19-44b4-92fb-fef3fc_D2
Tumor
0.6
80873a0c-1f40-4d51-bab1-3f2071_D2
Tumor
0.6
fbb41c94-aabd-49cc-90b2-882c3e_D2
Tumor
0.6
9c8e78bf-b03e-4ba0-9909-5ff070_D2
Tumor
0.5
318d53c3-216b-4de1-a098-77d6dd_D2
Tumor
0.5
1b2ab076-c72f-4bbe-b9f9-657d24_D2
Tumor
0.4
994f9b8e-46cb-413f-8ec8-2c2fed_D2
Normal
0.4
c17b0ff9-9057-4848-a0cc-abb25f_D2
Tumor
0.4
eb3f3494-7057-4afe-b212-e6e9a3_D2
Tumor
0.4
0c87932d-b6fd-4eb5-b86a-a34d07_D2
Tumor
0.3
46c73531-f531-4ec3-97fe-b39d9d_D2
Tumor
0.3
2f901c90-617e-46da-9fac-d68369_D2
Tumor
0.3
a583d3ff-8165-43e9-b764-23b7ef_D1_D2
Normal
0.3
10c2d629-0287-4511-ac25-f29031_D2
Tumor
0.2
42d860a3-8a0c-4c44-a09a-9ad8cf_D2
Tumor
0.2
2115808b-6a0d-49bc-a8d7-b83bde_D2
Tumor
0.2
e7b656bf-3c34-4ba1-bdf3-c7eefe_D2
Tumor
0.1
efc971f8-54c5-4531-a792-705ecf_D2
Tumor
0.1
a03d1103-b809-42c4-ad5c-5aff58_D2
Tumor
0.1
49bd51fe-48a1-4828-b66e-b30c38_D2
Tumor
0.1
eb0a53df-7620-4024-8d2d-051142_D2
Tumor
0.1
2433b136-fc7b-4cea-b958-bc6efb_D2
Tumor
0.0
f6c215ea-5381-4521-bb61-be8e97_D2
Tumor
0.0
1556af7e-c2ae-4fce-9aae-87c459_D1_D2
Normal
0.0
ce1e5dfc-2ef1-4633-af93-5ea4d9_D2
Tumor
0.0
74a45e5a-a35a-4c60-a4b4-f3f5ea_D2
Tumor
-0.1
2563cb02-d58a-4286-8634-7502cd_D2
Tumor
-0.1
285fed94-1495-448e-879b-b55de9_D2
Tumor
-0.1
a8853382-b726-4ce8-98d5-ca89df_D2
Tumor
-0.1
7d953d1d-84b6-4ecd-b1d7-1ed865_D2
Tumor
-0.1
e9d416e7-f661-400a-896e-388545_D2
Tumor
-0.1
79b60f32-6cca-4cb6-9a1e-22a3ac_D2
Tumor
-0.2
52c064a7-78d9-4a1a-85b4-27c6d1_D2
Tumor
-0.2
62f5840e-6cd7-4200-b651-645e53_D2
Tumor
-0.3
3e746bea-ed68-40e6-b348-6ddf08_D2
Normal
-0.3
31c15e30-21d4-4843-bd4a-9cd0d8_D2
Normal
-0.3
6319b36b-533c-4e86-8e12-80552e_D3
Tumor
-0.4
3490835c-c004-45ed-91f3-7c206f_D2
Tumor
-0.4
3946a96c-e0ae-442f-83b4-a9350e_D2
Tumor
-0.4
3fbf076a-824b-4eac-b6dc-bf5e59_D2
Normal
-0.4
1772e913-f62e-446a-8cf3-720348_D2
Tumor
-0.4
2ed8beb2-bc63-4bad-b5fe-1916a0_D2
Tumor
-0.4
1a10c200-3895-4648-b951-94f99f_D2
Tumor
-0.4
6e209757-a7f4-45af-b5f3-2ebc02_D2
Normal
-0.5
4ccb249a-6722-491e-97e9-e3b4e7_D2
Tumor
-0.5
927f0958-db5a-4bc5-92b7-2a3695_D2
Tumor
-0.5
b22659b9-e12c-4725-a7db-a833de_D1_D2
Normal
-0.6
7edfd606-4bee-4529-9fec-1ca7f0_D2
Normal
-0.6
1de8d3d8-fc0e-4be0-8aa7-127c7b_D2
Tumor
-0.6
69d552be-7cb2-4bb4-b602-a27b3e_D2
Tumor
-0.6
cfd76f9a-ce60-4ec7-8e6b-a8fc31_D3
Tumor
-0.6
7c7ce2d7-6c8a-424e-8e6c-d14ad1_D2
Tumor
-0.6
08296da7-70ea-44df-8646-09f2cc_D2
Tumor
-0.6
51a4ce2f-4166-4c6b-a7e0-942d0a_D2
Tumor
-0.6
0745488e-0bfb-4d1f-8228-dedf76_D1_D2
Normal
-0.6
d109a3c0-350e-47f5-bda0-61899c_D2
Tumor
-0.7
2b4ce90c-8036-4207-ac3e-54a76f_D2
Tumor
-0.7
1abbcb28-f221-4cd4-8c01-37b9bb_D1_D2
Normal
-0.7
627e6e36-3dca-4ee5-9755-6f3510_D2
Tumor
-0.7
3dcf8b3c-c0c5-4dfa-9543-5d30fb_D2
Tumor
-0.8
d38f40fb-dd78-43b2-8b7b-4b6977_D2
Tumor
-0.8
1c9145ad-1981-4871-aa7e-8b11de_D2
Tumor
-0.8
af95e2c6-25c4-4ab8-bf06-3e15ff_D2
Tumor
-0.8
28d0abdb-f682-4bd3-9425-a9c508_D2
Tumor
-0.8
e6850782-fd2a-4c53-b682-1852fe_D2
Tumor
-0.8
bd266bdd-12e4-42cb-9c49-911bfc_D2
Tumor
-0.8
e23eb014-69c1-460a-b9d4-9786c8_D2
Normal
-0.8
b9c1f22e-61f7-45ed-b3b4-5094c7_D2
Normal
-0.8
05387aad-2a1f-42c2-8d6f-950598_D3
Tumor
-0.9
21efd60f-6a31-4b98-9477-16a905_D2
Normal
-0.9
51c1c79e-5a8e-4b0a-bf92-1c0cab_D2
Tumor
-0.9
9e0d47e0-f633-468b-b82b-4d752d_D2
Tumor
-0.9
1db5574d-aca7-403c-8100-6e705f_D2
Normal
-1.0
340a3769-3031-41ae-bb08-a2f696_D2
Normal
-1.0
347e379b-77c0-4dd3-aa25-18c9d1_D2
Tumor
-1.0
9a7a86d3-bbf2-4d36-941d-c75c03_D1_D2
Tumor
-1.0
a3a26070-fb84-406a-8280-d555e6_D2
Normal
-1.0
35a345a4-e954-4c81-ae3f-7797cd_D2
Tumor
-1.0
3d3e1888-d67e-4c69-ba83-112d0f_D2
Tumor
-1.0
8ed739dd-ae0f-4881-971a-db3cf4_D1_D2
Normal
-1.0
a65d8e76-640f-4341-a561-afbb57_D2
Normal
-1.1
685ec3c2-e67a-40d3-9eb3-aa01c9_D1_D2
Normal
-1.1
2b73e01c-347a-4dae-a71d-752aeb_D2
Normal
-1.1
61f76fe6-a1c6-41b8-bdc2-2f9209_D2
Normal
-1.1
6530147a-efe9-4df6-ac2f-03ece3_D2
Tumor
-1.2
9b90eb78-2f50-4aeb-b010-d642f9_D2
Tumor
-1.2
092af714-b97a-457c-b0e9-8c20e8_D2
Normal
-1.2
fe83e13f-9754-403b-8f74-d6caf8_D2
Tumor
-1.2
8e17b45e-6a06-4e4e-913d-7b1edb_D2
Tumor
-1.2
91b287fd-eadb-442d-abcd-20b741_D2
Tumor
-1.2
2224c03f-b7b1-4368-887e-2b4cdf_D2
Tumor
-1.2
e3ebe010-cd31-4b5d-8fcb-b7103b_D2
Tumor
-1.3
41d0619e-b299-42e2-ac32-29e784_D2
Tumor
-1.3
161317f3-1a39-438e-af45-cd2502_D2
Tumor
-1.3
27f3ca2d-a86f-479d-8e7e-5307c7_D2
Tumor
-1.4
d4791079-c826-4fc7-9d9b-ee20ba_D2
Tumor
-1.4
5ea22f5e-307b-491d-801f-8b7fa6_D2
Tumor
-1.5
50997c44-1c8b-4d34-b535-4a6cc2_D2
Tumor
-1.6
Show allShow less
OVARIAN CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.