We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CRABP2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
2.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
109.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
107.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
92.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
69.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
19.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
16.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
14.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
11.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
10.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
10.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
10.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
10.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
9.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
9.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
8.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
8.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
8.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
7.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
7.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
7.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
6.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
6.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
6.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
5.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
5.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
5.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
4.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
4.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
3.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
3.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
3.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
3.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
3.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
2.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
2.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
2.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
2.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
2.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
2.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
2.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
2.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
2.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
2.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
2.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
2.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
2.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
2.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
2.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
2.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
2.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
2.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
1.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
1.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
1.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
1.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
1.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
1.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
1.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
1.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
1.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
1.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
1.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
1.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
1.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
1.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
1.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
1.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
1.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
1.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
1.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
1.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
1.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
1.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
1.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
1.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
1.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
1.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
1.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
1.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
1.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
1.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
1.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
1.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
1.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
1.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
1.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
1.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
1.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
1.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
1.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
1.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
1.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
1.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
1.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
1.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
1.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
1.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
1.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
1.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
1.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
1.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
1.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
1.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
1.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
1.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
1.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
1.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
1.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
1.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
0.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
0.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
0.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
0.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
0.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
0.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
0.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
0.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
0.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
0.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
0.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
0.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
0.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
0.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
0.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
0.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
0.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
0.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
0.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
0.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
0.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
0.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
0.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
0.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
0.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
0.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
0.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
0.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
0.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
0.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
0.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
0.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
0.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
0.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
0.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
0.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
0.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
0.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
0.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
0.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
0.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
0.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
0.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
0.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
0.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
0.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
0.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
0.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
0.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
0.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
0.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
0.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
0.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
0.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
0.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
0.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
0.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
0.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
0.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
0.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
0.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
0.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
0.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
0.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
0.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
0.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
0.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
0.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
0.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
0.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
0.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
0.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
0.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
0.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
0.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
0.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CRABP2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.8
Number of samples
231
Samples
Sample
Description
TPM
DO45245
0 years, female, NA, stage:2, dead, 240 days
397.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
341.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
194.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
178.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
129.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
36.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
22.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
19.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
15.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
15.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
13.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
10.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
10.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
8.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
7.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
6.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
5.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
5.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
4.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
4.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
3.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
3.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
3.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
3.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
3.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
2.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
2.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
2.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
2.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
2.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
2.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
2.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
2.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
2.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
2.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
2.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
2.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
2.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
2.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
2.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
1.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
1.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
1.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
1.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
1.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
1.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
1.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
1.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
1.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
1.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
1.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
1.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
1.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
1.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
1.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
1.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
1.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
1.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
1.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
1.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
1.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
1.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
1.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
1.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
1.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
1.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
1.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
1.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
1.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
1.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
1.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
1.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
1.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
1.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
0.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
0.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
0.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
0.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
0.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
0.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
0.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
0.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
0.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
0.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
0.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
0.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
0.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
0.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
0.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
0.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
0.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
0.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
0.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
0.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
0.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
0.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
0.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
0.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
0.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
0.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
0.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
0.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
0.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
0.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
0.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
0.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
0.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
0.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
0.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
0.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
0.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
0.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
0.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
0.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
0.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
0.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
0.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
0.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
0.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
0.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
0.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
0.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
0.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
0.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
0.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
0.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
0.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
0.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
0.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
0.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
0.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
0.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
0.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
0.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
0.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
0.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
0.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
0.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
0.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
0.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
0.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
0.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
0.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
0.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
0.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
0.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
0.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
0.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
0.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
0.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
0.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
0.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
0.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
0.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
0.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
0.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
0.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
0.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
0.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
0.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
0.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
0.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
0.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
0.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
0.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
0.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
0.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
0.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
0.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
0.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
0.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
0.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
0.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
0.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
0.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
0.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
0.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
0.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
0.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
0.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
0.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
0.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
0.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
0.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
0.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
0.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
0.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
0.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
0.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
283
Tumor
4.7
351
Tumor
2.9
311
Tumor
2.5
877
Tumor
2.2
697
Tumor
2.0
535
Tumor
1.7
385
Tumor
1.6
141
Tumor
1.5
433
Tumor
1.5
363
Tumor
1.5
813
Tumor
1.3
817
Tumor
1.2
727
Tumor
1.1
455
Tumor
1.1
943
Tumor
1.1
192
Normal
1.0
814
Normal
1.0
471
Tumor
0.9
536
Normal
0.9
331
Tumor
0.9
917
Tumor
0.8
525
Tumor
0.8
123
Tumor
0.8
228
Normal
0.6
916
Normal
0.6
195
Tumor
0.6
1045
Tumor
0.6
354
Normal
0.6
963
Tumor
0.6
975
Tumor
0.6
923
Tumor
0.6
125
Tumor
0.6
375
Tumor
0.5
852
Normal
0.5
297
Tumor
0.5
343
Tumor
0.5
327
Tumor
0.5
137
Tumor
0.4
284
Normal
0.4
227
Tumor
0.4
355
Tumor
0.4
492
Normal
0.4
211
Tumor
0.4
328
Normal
0.3
313
Tumor
0.3
364
Normal
0.3
516
Normal
0.3
483
Tumor
0.3
881
Tumor
0.3
444
Normal
0.3
918
Normal
0.3
953
Tumor
0.3
341
Tumor
0.3
384
Normal
0.3
938
Normal
0.3
956
Normal
0.2
188
Normal
0.2
468
Normal
0.2
823
Tumor
0.2
191
Tumor
0.2
526
Normal
0.2
498
Normal
0.2
224
Normal
0.2
186
Normal
0.2
478
Normal
0.2
958
Normal
0.2
312
Normal
0.2
365
Tumor
0.1
785
Tumor
0.1
743
Tumor
0.1
277
Tumor
0.1
968
Normal
0.1
937
Tumor
0.1
447
Tumor
0.1
921
Tumor
0.1
185
Tumor
0.1
461
Tumor
0.1
884
Normal
0.1
286
Normal
0.1
857
Tumor
0.1
352
Normal
0.1
386
Normal
0.1
148
Normal
0.0
126
Normal
0.0
786
Normal
0.0
416
Normal
0.0
387
Tumor
0.0
434
Normal
0.0
951
Tumor
0.0
954
Normal
0.0
368
Normal
0.0
491
Tumor
0.0
383
Tumor
0.0
746
Normal
0.0
756
Normal
0.0
361
Tumor
0.0
777
Tumor
0.0
926
Normal
-0.1
924
Normal
-0.1
366
Normal
-0.1
415
Tumor
-0.1
493
Tumor
-0.1
344
Normal
-0.1
162
Normal
-0.1
1044
Normal
-0.1
187
Tumor
-0.1
745
Tumor
-0.1
944
Normal
-0.1
172
Normal
-0.1
231
Tumor
-0.1
394
Normal
-0.1
212
Normal
-0.1
268
Normal
-0.2
1046
Normal
-0.2
964
Normal
-0.2
353
Tumor
-0.2
467
Tumor
-0.2
396
Normal
-0.2
213
Tumor
-0.2
395
Tumor
-0.2
392
Normal
-0.2
463
Tumor
-0.2
778
Normal
-0.2
922
Normal
-0.2
113
Tumor
-0.2
257
Tumor
-0.2
472
Normal
-0.3
362
Normal
-0.3
376
Normal
-0.3
955
Tumor
-0.3
278
Normal
-0.3
952
Normal
-0.3
925
Tumor
-0.3
388
Normal
-0.3
223
Tumor
-0.3
914
Normal
-0.3
114
Normal
-0.3
356
Normal
-0.3
391
Tumor
-0.3
464
Normal
-0.3
524
Normal
-0.3
285
Tumor
-0.3
966
Normal
-0.3
477
Tumor
-0.3
976
Normal
-0.3
698
Normal
-0.4
755
Tumor
-0.4
456
Normal
-0.4
196
Normal
-0.4
145
Tumor
-0.4
358
Normal
-0.4
816
Normal
-0.4
111
Normal
-0.4
913
Tumor
-0.4
912
Normal
-0.4
342
Normal
-0.4
314
Normal
-0.4
138
Normal
-0.4
332
Normal
-0.4
124
Normal
-0.4
127
Tumor
-0.5
448
Normal
-0.5
412
Normal
-0.5
518
Normal
-0.5
882
Normal
-0.5
161
Tumor
-0.5
432
Normal
-0.6
298
Normal
-0.6
915
Tumor
-0.6
393
Tumor
-0.6
272
Normal
-0.6
446
Normal
-0.6
462
Normal
-0.6
494
Normal
-0.7
515
Tumor
-0.7
878
Normal
-0.7
474
Normal
-0.7
262
Normal
-0.7
883
Tumor
-0.7
132
Normal
-0.7
214
Normal
-0.7
142
Normal
-0.8
818
Normal
-0.8
965
Tumor
-0.8
1043
Tumor
-0.8
147
Tumor
-0.8
466
Normal
-0.8
497
Tumor
-0.8
445
Tumor
-0.8
452
Normal
-0.8
514
Normal
-0.8
367
Tumor
-0.8
482
Normal
-0.8
258
Normal
-0.8
851
Tumor
-0.9
488
Normal
-0.9
744
Normal
-0.9
357
Tumor
-0.9
815
Tumor
-0.9
911
Tumor
-0.9
135
Tumor
-0.9
128
Normal
-1.0
232
Normal
-1.0
465
Tumor
-1.0
436
Normal
-1.0
112
Tumor
-1.0
723
Tumor
-1.1
136
Normal
-1.1
171
Tumor
-1.1
431
Tumor
-1.1
742
Normal
-1.1
435
Tumor
-1.1
217
Tumor
-1.1
451
Tumor
-1.1
738
Normal
-1.2
443
Tumor
-1.2
218
Normal
-1.2
858
Normal
-1.2
517
Tumor
-1.2
824
Normal
-1.2
957
Tumor
-1.2
473
Tumor
-1.3
146
Normal
-1.3
737
Tumor
-1.3
728
Normal
-1.3
261
Tumor
-1.3
724
Normal
-1.4
221
Tumor
-1.4
741
Tumor
-1.4
271
Tumor
-1.4
967
Tumor
-1.4
222
Normal
-1.4
523
Tumor
-1.4
513
Tumor
-1.5
481
Tumor
-1.5
484
Normal
-1.5
411
Tumor
-1.5
267
Tumor
-1.7
131
Tumor
-1.9
487
Tumor
-2.9
1022
Normal
N/A
1021
Tumor
N/A
1016
Normal
N/A
1015
Tumor
N/A
1014
Normal
N/A
1013
Tumor
N/A
713
Tumor
N/A
714
Normal
N/A
715
Tumor
N/A
716
Normal
N/A
1032
Normal
N/A
1031
Tumor
N/A
1028
Normal
N/A
1027
Tumor
N/A
1026
Normal
N/A
1025
Tumor
N/A
721
Tumor
N/A
722
Normal
N/A
1042
Normal
N/A
1041
Tumor
N/A
977
Tumor
N/A
615
Tumor
N/A
978
Normal
N/A
616
Normal
N/A
617
Tumor
N/A
618
Normal
N/A
981
Tumor
N/A
861
Tumor
N/A
982
Normal
N/A
862
Normal
N/A
983
Tumor
N/A
863
Tumor
N/A
984
Normal
N/A
864
Normal
N/A
865
Tumor
N/A
866
Normal
N/A
867
Tumor
N/A
868
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
873
Tumor
N/A
874
Normal
N/A
635
Tumor
N/A
636
Normal
N/A
641
Tumor
N/A
642
Normal
N/A
647
Tumor
N/A
527
Tumor
N/A
648
Normal
N/A
528
Normal
N/A
533
Tumor
N/A
413
Tumor
N/A
534
Normal
N/A
414
Normal
N/A
537
Tumor
N/A
538
Normal
N/A
661
Tumor
N/A
662
Normal
N/A
421
Tumor
N/A
663
Tumor
N/A
422
Normal
N/A
664
Normal
N/A
423
Tumor
N/A
665
Tumor
N/A
424
Normal
N/A
545
Tumor
N/A
666
Normal
N/A
425
Tumor
N/A
546
Normal
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
671
Tumor
N/A
672
Normal
N/A
553
Tumor
N/A
554
Normal
N/A
557
Tumor
N/A
558
Normal
N/A
563
Tumor
N/A
564
Normal
N/A
685
Tumor
N/A
686
Normal
N/A
567
Tumor
N/A
568
Normal
N/A
571
Tumor
N/A
572
Normal
N/A
573
Tumor
N/A
574
Normal
N/A
695
Tumor
N/A
696
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
