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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PFDN2 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
127.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
350.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
333.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
313.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
312.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
312.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
307.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
306.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
300.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
287.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
274.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
272.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
271.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
266.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
249.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
241.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
232.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
231.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
230.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
230.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
228.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
228.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
227.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
226.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
221.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
221.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
220.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
219.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
218.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
216.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
215.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
212.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
210.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
209.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
208.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
208.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
204.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
204.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
203.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
203.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
202.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
201.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
200.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
198.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
197.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
195.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
194.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
191.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
188.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
187.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
183.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
183.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
182.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
180.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
179.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
178.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
178.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
178.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
178.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
176.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
174.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
173.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
173.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
171.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
170.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
169.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
169.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
167.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
166.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
166.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
166.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
166.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
165.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
165.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
164.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
164.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
163.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
163.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
162.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
162.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
162.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
162.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
161.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
160.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
160.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
160.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
159.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
159.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
158.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
158.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
157.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
157.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
157.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
157.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
156.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
155.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
155.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
155.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
154.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
154.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
154.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
153.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
153.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
153.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
152.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
151.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
150.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
150.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
149.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
148.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
148.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
148.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
148.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
146.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
146.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
146.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
144.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
143.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
141.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
141.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
141.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
140.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
140.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
140.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
139.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
139.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
138.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
138.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
137.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
137.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
137.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
136.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
136.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
135.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
134.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
134.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
134.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
134.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
134.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
133.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
133.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
133.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
132.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
132.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
132.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
132.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
131.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
131.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
130.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
130.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
129.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
129.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
129.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
129.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
128.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
128.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
128.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
127.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
127.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
126.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
126.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
124.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
124.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
124.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
123.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
121.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
120.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
120.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
120.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
120.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
120.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
120.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
119.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
119.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
118.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
118.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
118.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
118.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
117.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
116.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
116.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
116.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
116.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
115.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
115.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
115.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
115.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
115.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
115.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
114.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
114.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
113.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
112.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
111.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
111.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
110.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
110.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
110.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
110.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
109.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
109.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
109.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
108.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
108.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
108.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
107.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
107.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
107.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
105.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
105.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
105.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
104.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
104.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
103.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
103.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
102.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
102.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
101.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
101.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
101.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
101.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
101.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
101.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
100.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
100.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
100.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
100.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
99.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
99.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
99.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
98.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
98.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
98.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
98.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
98.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
98.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
98.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
97.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
97.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
96.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
96.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
96.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
96.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
95.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
95.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
94.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
94.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
94.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
94.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
93.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
93.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
93.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
91.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
91.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
91.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
90.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
90.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
89.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
89.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
89.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
88.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
88.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
88.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
88.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
87.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
87.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
87.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
87.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
87.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
87.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
85.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
85.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
85.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
85.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
84.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
84.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
83.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
83.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
83.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
83.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
83.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
82.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
81.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
81.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
81.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
81.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
81.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
80.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
80.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
80.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
80.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
79.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
79.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
79.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
79.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
78.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
78.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
78.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
78.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
77.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
77.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
76.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
75.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
75.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
75.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
74.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
74.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
74.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
74.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
74.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
74.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
73.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
73.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
72.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
72.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
72.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
72.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
72.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
71.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
71.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
71.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
70.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
70.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
70.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
69.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
69.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
68.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
67.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
67.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
66.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
65.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
65.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
64.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
64.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
62.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
61.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
61.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
60.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
58.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
58.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
57.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
57.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
56.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
55.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
54.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
54.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
54.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
53.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
52.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
52.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
51.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
51.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
49.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
48.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
47.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
46.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
46.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
46.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
45.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
45.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
45.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
39.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PFDN2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
85.7
Number of samples
231
Samples
Sample
Description
TPM
DO45145
0 years, male, NA, stage:3, dead, 60 days
372.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
288.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
219.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
203.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
200.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
196.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
188.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
184.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
182.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
172.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
164.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
159.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
157.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
156.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
152.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
148.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
148.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
146.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
141.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
138.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
138.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
138.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
138.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
137.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
136.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
133.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
133.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
132.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
130.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
130.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
128.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
127.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
126.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
124.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
124.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
122.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
121.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
121.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
120.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
119.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
119.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
118.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
117.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
117.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
115.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
115.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
115.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
114.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
112.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
112.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
112.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
111.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
111.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
110.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
109.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
109.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
108.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
107.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
106.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
105.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
105.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
105.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
102.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
102.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
102.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
101.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
100.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
100.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
100.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
99.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
98.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
97.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
97.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
96.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
94.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
94.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
94.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
94.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
93.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
92.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
92.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
91.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
90.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
89.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
88.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
88.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
88.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
88.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
87.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
87.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
86.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
85.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
85.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
85.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
85.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
85.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
84.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
84.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
83.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
83.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
83.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
82.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
82.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
82.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
82.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
81.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
81.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
81.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
81.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
80.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
80.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
79.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
79.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
79.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
78.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
78.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
78.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
77.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
77.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
77.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
77.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
77.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
76.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
75.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
74.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
74.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
72.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
70.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
70.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
70.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
70.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
70.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
70.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
69.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
68.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
68.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
68.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
67.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
67.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
67.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
66.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
66.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
66.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
66.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
66.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
65.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
64.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
64.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
64.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
64.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
63.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
62.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
61.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
61.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
61.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
61.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
61.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
60.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
60.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
60.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
60.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
60.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
59.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
59.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
58.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
58.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
58.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
58.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
58.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
57.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
57.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
56.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
56.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
56.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
54.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
54.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
52.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
52.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
52.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
51.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
51.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
50.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
50.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
50.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
49.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
48.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
48.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
48.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
47.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
47.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
47.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
47.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
47.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
46.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
46.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
46.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
45.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
45.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
44.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
44.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
44.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
44.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
43.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
43.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
42.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
41.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
41.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
40.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
39.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
39.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
39.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
39.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
38.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
38.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
38.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
37.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
37.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
37.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
37.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
36.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
35.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
34.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
34.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
33.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
32.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
31.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
31.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
29.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
29.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
26.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
25.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1013
Tumor
1.6
567
Tumor
1.0
951
Tumor
1.0
545
Tumor
0.9
527
Tumor
0.8
411
Tumor
0.8
351
Tumor
0.8
537
Tumor
0.8
147
Tumor
0.8
1021
Tumor
0.8
425
Tumor
0.8
923
Tumor
0.8
647
Tumor
0.7
663
Tumor
0.7
435
Tumor
0.7
483
Tumor
0.7
487
Tumor
0.7
473
Tumor
0.7
724
Normal
0.7
777
Tumor
0.7
953
Tumor
0.6
745
Tumor
0.6
525
Tumor
0.6
865
Tumor
0.6
965
Tumor
0.6
523
Tumor
0.6
983
Tumor
0.6
1027
Tumor
0.6
661
Tumor
0.5
327
Tumor
0.5
573
Tumor
0.5
131
Tumor
0.5
283
Tumor
0.5
331
Tumor
0.5
497
Tumor
0.5
471
Tumor
0.4
385
Tumor
0.4
943
Tumor
0.4
957
Tumor
0.4
1031
Tumor
0.4
517
Tumor
0.4
1025
Tumor
0.4
553
Tumor
0.4
921
Tumor
0.4
463
Tumor
0.4
445
Tumor
0.4
977
Tumor
0.4
515
Tumor
0.4
477
Tumor
0.4
737
Tumor
0.4
211
Tumor
0.4
431
Tumor
0.4
313
Tumor
0.3
447
Tumor
0.3
695
Tumor
0.3
355
Tumor
0.3
533
Tumor
0.3
873
Tumor
0.3
881
Tumor
0.3
357
Tumor
0.3
285
Tumor
0.3
171
Tumor
0.3
257
Tumor
0.3
415
Tumor
0.3
883
Tumor
0.3
387
Tumor
0.3
963
Tumor
0.3
915
Tumor
0.3
785
Tumor
0.3
271
Tumor
0.2
443
Tumor
0.2
967
Tumor
0.2
727
Tumor
0.2
1043
Tumor
0.2
227
Tumor
0.2
221
Tumor
0.2
513
Tumor
0.2
367
Tumor
0.2
161
Tumor
0.2
125
Tumor
0.2
465
Tumor
0.2
937
Tumor
0.2
857
Tumor
0.2
975
Tumor
0.2
671
Tumor
0.2
481
Tumor
0.2
491
Tumor
0.2
433
Tumor
0.2
493
Tumor
0.2
635
Tumor
0.2
277
Tumor
0.2
191
Tumor
0.2
925
Tumor
0.1
123
Tumor
0.1
427
Tumor
0.1
141
Tumor
0.1
665
Tumor
0.1
311
Tumor
0.1
498
Normal
0.1
1015
Tumor
0.1
455
Tumor
0.1
685
Tumor
0.1
817
Tumor
0.1
135
Tumor
0.1
535
Tumor
0.1
863
Tumor
0.1
395
Tumor
0.1
917
Tumor
0.1
697
Tumor
0.1
461
Tumor
0.1
851
Tumor
0.1
743
Tumor
0.1
823
Tumor
0.1
217
Tumor
0.1
145
Tumor
0.1
492
Normal
0.1
978
Normal
0.1
913
Tumor
0.1
375
Tumor
0.1
721
Tumor
0.0
958
Normal
0.0
484
Normal
0.0
297
Tumor
0.0
383
Tumor
0.0
127
Tumor
0.0
361
Tumor
0.0
861
Tumor
0.0
911
Tumor
0.0
137
Tumor
0.0
1041
Tumor
0.0
524
Normal
0.0
261
Tumor
0.0
341
Tumor
0.0
916
Normal
0.0
1022
Normal
0.0
715
Tumor
0.0
516
Normal
0.0
955
Tumor
0.0
363
Tumor
0.0
563
Tumor
0.0
814
Normal
0.0
571
Tumor
0.0
536
Normal
0.0
185
Tumor
-0.1
1014
Normal
-0.1
741
Tumor
-0.1
478
Normal
-0.1
981
Tumor
-0.1
467
Tumor
-0.1
877
Tumor
-0.1
232
Normal
-0.1
713
Tumor
-0.1
813
Tumor
-0.1
976
Normal
-0.1
488
Normal
-0.1
755
Tumor
-0.1
938
Normal
-0.1
867
Tumor
-0.1
966
Normal
-0.1
882
Normal
-0.1
413
Tumor
-0.1
615
Tumor
-0.1
272
Normal
-0.1
466
Normal
-0.1
112
Tumor
-0.1
353
Tumor
-0.1
557
Tumor
-0.1
1028
Normal
-0.1
944
Normal
-0.1
393
Tumor
-0.1
213
Tumor
-0.1
627
Tumor
-0.1
224
Normal
-0.1
514
Normal
-0.1
952
Normal
-0.1
714
Normal
-0.1
964
Normal
-0.2
824
Normal
-0.2
231
Tumor
-0.2
815
Tumor
-0.2
284
Normal
-0.2
448
Normal
-0.2
262
Normal
-0.2
494
Normal
-0.2
696
Normal
-0.2
617
Tumor
-0.2
1045
Tumor
-0.2
723
Tumor
-0.2
451
Tumor
-0.2
212
Normal
-0.2
641
Tumor
-0.2
518
Normal
-0.2
858
Normal
-0.2
538
Normal
-0.2
223
Tumor
-0.2
884
Normal
-0.2
482
Normal
-0.2
984
Normal
-0.2
982
Normal
-0.2
146
Normal
-0.2
444
Normal
-0.2
286
Normal
-0.2
878
Normal
-0.2
924
Normal
-0.2
912
Normal
-0.2
1016
Normal
-0.2
1026
Normal
-0.2
956
Normal
-0.2
616
Normal
-0.2
722
Normal
-0.2
416
Normal
-0.2
698
Normal
-0.2
472
Normal
-0.2
918
Normal
-0.2
968
Normal
-0.2
391
Tumor
-0.2
343
Tumor
-0.2
526
Normal
-0.2
267
Tumor
-0.2
136
Normal
-0.2
1032
Normal
-0.2
1044
Normal
-0.2
421
Tumor
-0.3
558
Normal
-0.3
818
Normal
-0.3
268
Normal
-0.3
554
Normal
-0.3
716
Normal
-0.3
228
Normal
-0.3
664
Normal
-0.3
412
Normal
-0.3
1042
Normal
-0.3
1046
Normal
-0.3
874
Normal
-0.3
738
Normal
-0.3
364
Normal
-0.3
628
Normal
-0.3
816
Normal
-0.3
468
Normal
-0.3
728
Normal
-0.3
376
Normal
-0.3
474
Normal
-0.3
332
Normal
-0.3
666
Normal
-0.3
172
Normal
-0.3
328
Normal
-0.3
113
Tumor
-0.3
298
Normal
-0.3
258
Normal
-0.3
926
Normal
-0.3
312
Normal
-0.3
546
Normal
-0.3
384
Normal
-0.3
618
Normal
-0.3
862
Normal
-0.3
434
Normal
-0.3
162
Normal
-0.3
852
Normal
-0.3
132
Normal
-0.3
864
Normal
-0.3
756
Normal
-0.3
142
Normal
-0.3
642
Normal
-0.3
868
Normal
-0.3
464
Normal
-0.3
534
Normal
-0.3
954
Normal
-0.3
648
Normal
-0.3
187
Tumor
-0.3
922
Normal
-0.3
746
Normal
-0.3
866
Normal
-0.3
414
Normal
-0.3
365
Tumor
-0.4
192
Normal
-0.4
423
Tumor
-0.4
778
Normal
-0.4
314
Normal
-0.4
195
Tumor
-0.4
742
Normal
-0.4
462
Normal
-0.4
356
Normal
-0.4
352
Normal
-0.4
362
Normal
-0.4
126
Normal
-0.4
672
Normal
-0.4
662
Normal
-0.4
188
Normal
-0.4
528
Normal
-0.4
138
Normal
-0.4
148
Normal
-0.4
452
Normal
-0.4
436
Normal
-0.4
636
Normal
-0.4
456
Normal
-0.4
128
Normal
-0.4
432
Normal
-0.4
686
Normal
-0.4
278
Normal
-0.4
111
Normal
-0.4
394
Normal
-0.4
914
Normal
-0.4
196
Normal
-0.4
344
Normal
-0.4
424
Normal
-0.4
744
Normal
-0.5
214
Normal
-0.5
368
Normal
-0.5
786
Normal
-0.5
358
Normal
-0.5
572
Normal
-0.5
568
Normal
-0.5
114
Normal
-0.5
426
Normal
-0.5
428
Normal
-0.5
564
Normal
-0.5
386
Normal
-0.5
446
Normal
-0.5
422
Normal
-0.5
354
Normal
-0.5
392
Normal
-0.5
186
Normal
-0.5
574
Normal
-0.5
366
Normal
-0.6
124
Normal
-0.6
218
Normal
-0.6
388
Normal
-0.6
396
Normal
-0.6
222
Normal
-0.6
342
Normal
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.