MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:184.9 nTPM
HPA Brain:89.4 nTPM
GTEx:184.9 nTPM
FANTOM5:117.3 Scaled Tags Per Million
Pig:31.4 nTPM
Mouse:79.8 nTPM
Allen mouse:3.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 89.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 71.6
2666 Male, age 74, left hemisphere 110.0
1870 Female, age 42, unknown 85.9
1833 Male, age 53, unknown 79.1
2411 Female, age 72, unknown 74.2
1827 Male, age 72, unknown 71.6
1830 Male, age 51, unknown 67.6
2828 Female, age 72, unknown 62.7
2219 Male, age 76, both hemispheres 60.8
2019 Male, age 18, unknown 53.9
2586 Male, age 75, left hemisphere 50.7
Dorsal raphe nucleus
nTPM: 62.4
2750 Male, age 76, both hemispheres 72.8
1828 Male, age 53, unknown 68.9
2047 Male, age 72, unknown 60.7
2016 Female, age 72, unknown 56.6
2298 Female, age 72, unknown 53.1
Inferior colliculus
nTPM: 61.8
2849 Male, age 72, unknown 67.1
1890 Male, age 53, unknown 65.1
2097 Female, age 72, unknown 58.4
1848 Female, age 42, unknown 56.6
Median raphe nucleus
nTPM: 89.4
2220 Male, age 76, midline 89.4
Periaquaductal grey, anterior
nTPM: 56.5
1947 Male, age 18, unknown 63.9
1795 Male, age 51, unknown 60.4
2502 Female, age 75, unknown 45.2
Periaquaductal grey, dorsal
nTPM: 55.3
2850 Male, age 76, both hemispheres 62.2
1840 Male, age 53, unknown 55.2
1831 Male, age 72, unknown 54.5
2464 Female, age 72, unknown 49.1
Periaquaductal grey, lateral
nTPM: 50.5
2053 Male, age 18, unknown 54.4
2140 Male, age 76, both hemispheres 53.3
2272 Male, age 74, both hemispheres 43.8
Pretectal area
nTPM: 58.8
1817 Female, age 42, unknown 71.9
2825 Male, age 18, unknown 67.0
1815 Male, age 53, unknown 66.2
2007 Male, age 72, unknown 66.2
1944 Female, age 72, unknown 64.7
1816 Male, age 51, unknown 60.3
2224 Female, age 72, unknown 59.6
2407 Male, age 75, both hemispheres 55.2
2667 Female, age 75, unknown 49.7
2316 Male, age 76, right hemisphere 45.7
2273 Male, age 74, both hemispheres 40.1
Red nucleus
nTPM: 80.8
2725 Female, age 75, unknown 110.2
2503 Female, age 72, unknown 89.3
1821 Female, age 72, unknown 86.0
1954 Female, age 42, unknown 85.6
1904 Male, age 53, unknown 80.8
2584 Male, age 75, left hemisphere 80.8
2227 Male, age 72, unknown 77.7
2769 Male, age 72, unknown 77.7
1865 Male, age 51, unknown 75.9
2588 Male, age 74, left hemisphere 72.8
2823 Male, age 76, right hemisphere 68.3
2785 Male, age 18, unknown 64.1
Substantia nigra
nTPM: 76.2
1916 Female, age 42, unknown 101.9
2699 Male, age 18, unknown 90.8
1851 Male, age 51, unknown 82.3
2665 Male, age 74, both hemispheres 81.7
1889 Female, age 72, unknown 77.7
2241 Male, age 72, unknown 70.6
2583 Male, age 75, right hemisphere 69.8
2409 Female, age 72, unknown 69.0
2590 Female, age 75, unknown 60.1
1941 Male, age 53, unknown 57.8
Superior colliculus
nTPM: 58.7
2587 Male, age 74, left hemisphere 75.4
2668 Female, age 75, unknown 75.4
1895 Male, age 76, right hemisphere 61.2
1796 Male, age 53, unknown 60.6
1913 Female, age 42, unknown 58.3
1839 Male, age 51, unknown 56.8
2261 Male, age 18, unknown 54.3
1995 Male, age 72, unknown 53.0
2087 Female, age 72, unknown 52.4
2664 Male, age 75, both hemispheres 39.8
Ventral tegmental area
nTPM: 71.9
2218 Male, age 76, both hemispheres 84.0
1915 Female, age 42, unknown 79.5
2410 Female, age 72, unknown 76.2
2223 Female, age 72, unknown 69.7
1942 Male, age 51, unknown 64.3
2021 Male, age 53, unknown 57.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 184.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 184.9
Samples: 139

Max nTPM: 414.4
Min nTPM: 83.9
Std nTPM: 52.2
Median nTPM: 179.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 414.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 319.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 304.4
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 303.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 297.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 289.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 283.9
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 279.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 267.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 264.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 260.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 117.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 117.3
FF:10158-103A5 76 years, female 117.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 31.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 29.1
Samples: 4

Max nTPM: 41.2
Min nTPM: 19.6
Sample A Female 41.2
Sample B Female 20.8
Sample C Male 34.8
Sample D Male 19.6
Midbrain
nTPM: 29.5
Samples: 4

Max nTPM: 38.6
Min nTPM: 21.0
Sample A Female 33.8
Sample B Female 38.6
Sample C Male 21.0
Sample D Male 24.5
Periaqueductal gray
nTPM: 31.4
Samples: 3

Max nTPM: 34.9
Min nTPM: 27.2
Sample B Female 32.2
Sample C Male 34.9
Sample D Male 27.2
Superior colliculi
nTPM: 24.6
Samples: 4

Max nTPM: 32.4
Min nTPM: 15.1
Sample A Female 32.4
Sample B Female 15.1
Sample C Male 24.4
Sample D Male 26.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 79.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 79.8
Samples: 4

Max nTPM: 83.7
Min nTPM: 74.9
Sample A Male 80.3
Sample B Male 80.1
Sample C Female 74.9
Sample D Female 83.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.6
68666601 Antisense, RP_050126_02_E12, Mouse strain C57BL/6J (56 days, male) 3.6

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