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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PTPRF is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
60.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
402.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
332.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
308.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
250.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
195.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
192.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
161.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
150.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
149.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
149.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
146.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
143.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
139.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
137.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
136.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
133.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
130.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
127.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
127.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
127.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
124.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
120.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
118.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
117.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
116.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
116.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
114.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
114.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
113.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
111.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
111.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
111.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
111.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
108.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
107.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
106.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
106.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
105.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
105.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
104.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
104.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
103.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
103.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
102.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
102.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
102.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
102.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
100.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
100.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
100.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
100.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
99.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
99.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
98.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
97.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
97.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
97.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
93.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
93.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
93.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
92.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
92.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
91.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
91.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
90.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
90.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
90.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
88.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
88.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
87.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
87.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
87.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
86.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
86.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
86.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
86.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
84.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
83.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
83.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
82.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
82.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
81.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
81.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
81.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
80.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
79.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
79.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
78.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
78.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
78.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
78.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
78.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
77.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
76.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
75.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
75.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
75.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
74.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
73.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
73.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
71.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
71.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
71.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
70.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
70.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
70.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
69.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
69.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
69.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
69.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
69.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
69.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
68.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
68.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
68.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
68.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
68.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
67.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
67.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
67.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
66.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
66.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
65.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
65.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
65.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
64.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
64.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
64.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
63.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
63.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
63.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
62.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
62.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
62.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
62.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
61.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
61.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
60.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
60.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
60.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
59.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
59.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
59.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
59.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
59.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
58.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
58.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
58.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
58.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
58.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
58.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
57.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
57.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
56.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
56.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
56.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
55.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
54.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
54.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
54.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
54.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
54.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
54.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
54.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
54.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
54.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
54.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
53.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
53.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
53.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
52.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
52.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
52.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
52.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
52.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
52.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
52.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
52.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
52.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
52.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
51.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
51.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
51.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
51.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
50.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
50.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
50.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
50.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
50.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
49.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
49.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
49.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
49.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
49.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
49.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
48.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
48.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
48.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
48.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
48.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
48.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
47.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
47.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
47.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
47.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
46.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
46.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
46.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
46.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
46.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
46.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
46.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
46.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
46.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
45.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
45.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
45.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
45.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
44.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
44.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
44.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
44.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
43.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
43.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
43.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
42.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
42.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
42.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
42.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
42.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
41.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
41.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
41.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
41.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
41.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
41.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
41.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
40.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
40.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
40.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
40.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
40.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
40.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
40.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
39.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
39.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
39.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
39.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
39.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
38.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
38.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
38.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
37.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
36.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
36.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
36.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
35.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
35.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
35.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
34.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
34.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
34.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
34.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
34.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
34.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
33.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
33.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
33.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
33.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
33.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
32.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
32.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
32.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
32.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
32.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
32.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
32.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
32.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
32.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
31.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
31.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
31.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
31.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
31.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
30.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
30.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
30.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
30.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
30.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
30.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
29.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
29.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
29.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
29.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
28.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
28.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
28.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
28.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
28.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
28.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
28.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
28.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
28.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
28.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
28.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
27.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
26.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
26.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
26.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
26.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
25.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
25.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
25.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
25.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
25.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
24.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
24.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
24.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
24.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
23.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
23.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
23.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
22.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
22.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
22.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
21.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
21.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
21.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
21.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
21.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
20.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
20.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
19.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
19.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
19.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
19.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
18.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
18.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
18.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
18.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
17.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
16.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
15.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
15.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
14.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
14.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
14.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
13.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
13.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
13.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
12.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
12.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
11.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
10.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
10.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
9.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
8.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
8.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
8.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
8.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
7.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PTPRF is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
39.0
Number of samples
231
Samples
Sample
Description
TPM
DO45245
0 years, female, NA, stage:2, dead, 240 days
361.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
163.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
111.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
105.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
97.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
95.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
89.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
86.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
81.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
79.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
79.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
79.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
78.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
74.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
74.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
74.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
73.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
73.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
70.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
69.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
69.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
68.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
66.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
65.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
65.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
63.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
63.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
62.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
62.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
62.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
61.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
61.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
61.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
61.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
60.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
60.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
60.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
59.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
58.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
56.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
56.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
55.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
55.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
55.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
55.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
54.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
54.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
54.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
52.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
51.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
51.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
50.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
50.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
50.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
49.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
48.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
48.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
47.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
47.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
46.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
46.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
45.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
45.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
44.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
44.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
44.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
44.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
44.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
43.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
43.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
43.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
42.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
42.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
42.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
42.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
42.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
42.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
41.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
41.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
40.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
40.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
40.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
39.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
39.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
38.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
38.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
38.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
37.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
37.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
37.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
37.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
37.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
37.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
37.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
37.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
36.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
36.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
36.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
35.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
35.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
35.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
35.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
35.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
35.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
34.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
34.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
34.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
34.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
34.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
34.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
34.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
33.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
33.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
33.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
32.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
32.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
32.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
32.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
32.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
31.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
31.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
31.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
31.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
30.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
30.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
30.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
30.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
30.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
30.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
30.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
30.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
30.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
29.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
29.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
29.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
29.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
29.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
29.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
28.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
28.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
27.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
27.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
27.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
27.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
27.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
27.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
27.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
27.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
27.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
26.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
26.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
26.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
26.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
26.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
26.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
25.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
25.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
25.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
25.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
25.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
25.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
24.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
24.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
24.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
24.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
24.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
24.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
23.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
23.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
23.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
23.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
23.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
23.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
23.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
23.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
22.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
22.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
22.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
22.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
22.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
22.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
22.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
21.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
21.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
21.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
21.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
20.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
20.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
20.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
20.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
20.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
19.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
18.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
18.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
18.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
18.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
18.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
18.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
18.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
18.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
17.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
17.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
17.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
17.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
16.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
16.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
15.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
15.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
15.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
15.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
15.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
14.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
14.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
14.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
14.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
13.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
13.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
13.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
12.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
12.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
12.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
11.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
11.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
10.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
10.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
9.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
9.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
9.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
8.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
6.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
1.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
523
Tumor
1.2
1021
Tumor
1.2
727
Tumor
1.1
112
Tumor
1.0
425
Tumor
1.0
393
Tumor
1.0
267
Tumor
0.9
573
Tumor
0.8
647
Tumor
0.8
1025
Tumor
0.8
527
Tumor
0.8
737
Tumor
0.7
951
Tumor
0.7
465
Tumor
0.7
463
Tumor
0.7
367
Tumor
0.6
125
Tumor
0.6
277
Tumor
0.6
663
Tumor
0.6
431
Tumor
0.6
526
Normal
0.6
685
Tumor
0.6
343
Tumor
0.5
445
Tumor
0.5
387
Tumor
0.5
1046
Normal
0.5
743
Tumor
0.5
187
Tumor
0.5
413
Tumor
0.5
635
Tumor
0.5
135
Tumor
0.5
257
Tumor
0.5
483
Tumor
0.4
943
Tumor
0.4
545
Tumor
0.4
487
Tumor
0.4
923
Tumor
0.4
497
Tumor
0.4
537
Tumor
0.4
436
Normal
0.3
723
Tumor
0.3
873
Tumor
0.3
756
Normal
0.3
777
Tumor
0.3
911
Tumor
0.3
863
Tumor
0.3
926
Normal
0.3
862
Normal
0.3
1027
Tumor
0.3
286
Normal
0.3
218
Normal
0.3
518
Normal
0.3
568
Normal
0.3
913
Tumor
0.3
185
Tumor
0.3
964
Normal
0.3
813
Tumor
0.3
464
Normal
0.3
664
Normal
0.3
884
Normal
0.2
217
Tumor
0.2
131
Tumor
0.2
426
Normal
0.2
514
Normal
0.2
448
Normal
0.2
314
Normal
0.2
883
Tumor
0.2
484
Normal
0.2
1015
Tumor
0.2
141
Tumor
0.2
515
Tumor
0.2
472
Normal
0.2
113
Tumor
0.2
965
Tumor
0.2
975
Tumor
0.2
482
Normal
0.2
925
Tumor
0.2
111
Normal
0.2
414
Normal
0.2
1041
Tumor
0.2
428
Normal
0.2
222
Normal
0.2
363
Tumor
0.2
786
Normal
0.2
392
Normal
0.2
696
Normal
0.2
742
Normal
0.2
313
Tumor
0.2
435
Tumor
0.2
534
Normal
0.2
396
Normal
0.2
423
Tumor
0.2
196
Normal
0.2
148
Normal
0.1
427
Tumor
0.1
297
Tumor
0.1
332
Normal
0.1
488
Normal
0.1
982
Normal
0.1
877
Tumor
0.1
1016
Normal
0.1
391
Tumor
0.1
745
Tumor
0.1
356
Normal
0.1
618
Normal
0.1
462
Normal
0.1
223
Tumor
0.1
714
Normal
0.1
912
Normal
0.1
957
Tumor
0.1
671
Tumor
0.1
466
Normal
0.1
741
Tumor
0.1
648
Normal
0.1
938
Normal
0.1
665
Tumor
0.1
1045
Tumor
0.1
944
Normal
0.1
924
Normal
0.1
627
Tumor
0.1
1026
Normal
0.1
528
Normal
0.1
666
Normal
0.1
517
Tumor
0.1
128
Normal
0.1
452
Normal
0.1
525
Tumor
0.1
1022
Normal
0.1
882
Normal
0.1
922
Normal
0.1
364
Normal
0.1
698
Normal
0.0
132
Normal
0.0
567
Tumor
0.0
161
Tumor
0.0
513
Tumor
0.0
456
Normal
0.0
361
Tumor
0.0
365
Tumor
0.0
546
Normal
0.0
713
Tumor
0.0
186
Normal
0.0
412
Normal
0.0
866
Normal
0.0
937
Tumor
0.0
641
Tumor
0.0
967
Tumor
0.0
785
Tumor
0.0
271
Tumor
0.0
424
Normal
0.0
914
Normal
0.0
376
Normal
0.0
443
Tumor
0.0
554
Normal
0.0
572
Normal
0.0
375
Tumor
0.0
162
Normal
0.0
195
Tumor
0.0
981
Tumor
0.0
123
Tumor
0.0
963
Tumor
0.0
818
Normal
0.0
258
Normal
0.0
272
Normal
0.0
493
Tumor
0.0
953
Tumor
0.0
285
Tumor
0.0
867
Tumor
0.0
385
Tumor
0.0
278
Normal
0.0
358
Normal
0.0
481
Tumor
0.0
394
Normal
-0.1
814
Normal
-0.1
824
Normal
-0.1
1013
Tumor
-0.1
212
Normal
-0.1
388
Normal
-0.1
858
Normal
-0.1
686
Normal
-0.1
571
Tumor
-0.1
473
Tumor
-0.1
1032
Normal
-0.1
232
Normal
-0.1
433
Tumor
-0.1
446
Normal
-0.1
636
Normal
-0.1
728
Normal
-0.1
172
Normal
-0.1
298
Normal
-0.1
451
Tumor
-0.1
535
Tumor
-0.1
191
Tumor
-0.1
642
Normal
-0.1
874
Normal
-0.1
1014
Normal
-0.1
432
Normal
-0.1
616
Normal
-0.1
564
Normal
-0.1
422
Normal
-0.1
341
Tumor
-0.1
368
Normal
-0.1
716
Normal
-0.1
231
Tumor
-0.1
662
Normal
-0.1
491
Tumor
-0.1
221
Tumor
-0.1
778
Normal
-0.1
574
Normal
-0.1
817
Tumor
-0.1
533
Tumor
-0.1
142
Normal
-0.1
114
Normal
-0.1
557
Tumor
-0.1
755
Tumor
-0.1
968
Normal
-0.1
145
Tumor
-0.1
146
Normal
-0.1
738
Normal
-0.1
331
Tumor
-0.1
851
Tumor
-0.2
956
Normal
-0.2
918
Normal
-0.2
558
Normal
-0.2
1042
Normal
-0.2
342
Normal
-0.2
461
Tumor
-0.2
746
Normal
-0.2
516
Normal
-0.2
1044
Normal
-0.2
415
Tumor
-0.2
352
Normal
-0.2
958
Normal
-0.2
228
Normal
-0.2
354
Normal
-0.2
386
Normal
-0.2
366
Normal
-0.2
628
Normal
-0.2
474
Normal
-0.2
978
Normal
-0.2
477
Tumor
-0.2
954
Normal
-0.2
615
Tumor
-0.2
411
Tumor
-0.2
136
Normal
-0.2
868
Normal
-0.2
138
Normal
-0.2
416
Normal
-0.2
328
Normal
-0.2
722
Normal
-0.2
362
Normal
-0.2
816
Normal
-0.2
498
Normal
-0.2
344
Normal
-0.2
384
Normal
-0.2
617
Tumor
-0.2
468
Normal
-0.2
952
Normal
-0.3
192
Normal
-0.3
284
Normal
-0.3
171
Tumor
-0.3
864
Normal
-0.3
672
Normal
-0.3
467
Tumor
-0.3
983
Tumor
-0.3
471
Tumor
-0.3
355
Tumor
-0.3
494
Normal
-0.3
214
Normal
-0.3
224
Normal
-0.3
976
Normal
-0.3
823
Tumor
-0.3
977
Tumor
-0.3
357
Tumor
-0.3
312
Normal
-0.3
744
Normal
-0.3
865
Tumor
-0.3
966
Normal
-0.3
857
Tumor
-0.3
262
Normal
-0.3
353
Tumor
-0.3
1028
Normal
-0.3
921
Tumor
-0.3
126
Normal
-0.3
915
Tumor
-0.3
455
Tumor
-0.3
137
Tumor
-0.3
563
Tumor
-0.3
984
Normal
-0.3
1031
Tumor
-0.4
327
Tumor
-0.4
881
Tumor
-0.4
283
Tumor
-0.4
268
Normal
-0.4
124
Normal
-0.4
955
Tumor
-0.4
127
Tumor
-0.4
661
Tumor
-0.4
538
Normal
-0.4
421
Tumor
-0.4
852
Normal
-0.4
878
Normal
-0.4
383
Tumor
-0.5
478
Normal
-0.5
227
Tumor
-0.5
524
Normal
-0.5
188
Normal
-0.5
916
Normal
-0.5
311
Tumor
-0.5
715
Tumor
-0.5
1043
Tumor
-0.5
434
Normal
-0.5
492
Normal
-0.5
697
Tumor
-0.5
553
Tumor
-0.6
695
Tumor
-0.6
351
Tumor
-0.6
147
Tumor
-0.6
447
Tumor
-0.6
395
Tumor
-0.6
536
Normal
-0.6
861
Tumor
-0.6
444
Normal
-0.6
721
Tumor
-0.6
917
Tumor
-0.7
261
Tumor
-0.7
213
Tumor
-0.8
211
Tumor
-0.9
724
Normal
-0.9
815
Tumor
-1.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
