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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NOSIP is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
47.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
154.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
145.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
130.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
128.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
118.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
118.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
114.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
110.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
109.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
104.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
103.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
102.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
102.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
93.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
92.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
90.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
89.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
88.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
88.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
88.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
87.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
87.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
87.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
87.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
87.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
84.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
84.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
84.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
81.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
80.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
79.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
79.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
79.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
77.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
77.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
77.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
75.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
74.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
74.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
73.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
72.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
72.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
72.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
72.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
71.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
71.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
71.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
70.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
70.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
70.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
69.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
69.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
68.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
66.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
66.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
66.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
65.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
65.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
64.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
64.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
63.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
62.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
62.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
61.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
61.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
61.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
61.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
61.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
61.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
60.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
60.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
59.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
59.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
59.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
59.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
58.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
58.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
57.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
57.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
57.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
57.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
56.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
56.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
56.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
56.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
56.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
56.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
55.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
55.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
55.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
55.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
55.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
54.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
54.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
54.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
53.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
53.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
53.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
53.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
52.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
52.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
52.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
52.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
51.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
51.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
51.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
51.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
51.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
51.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
51.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
51.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
51.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
51.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
51.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
51.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
51.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
51.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
51.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
50.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
50.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
50.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
50.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
49.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
49.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
49.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
49.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
49.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
48.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
48.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
48.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
48.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
48.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
48.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
48.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
47.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
47.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
47.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
47.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
47.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
46.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
46.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
46.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
46.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
46.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
46.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
46.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
46.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
46.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
46.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
46.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
45.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
45.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
45.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
45.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
45.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
45.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
44.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
44.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
44.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
44.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
44.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
44.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
44.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
44.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
44.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
44.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
44.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
44.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
43.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
43.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
42.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
42.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
42.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
42.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
42.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
42.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
42.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
41.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
41.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
41.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
41.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
41.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
41.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
41.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
41.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
41.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
40.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
40.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
40.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
40.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
40.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
40.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
40.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
40.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
40.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
40.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
40.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
40.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
40.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
40.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
39.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
39.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
39.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
39.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
39.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
39.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
39.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
39.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
39.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
39.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
38.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
38.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
38.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
38.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
38.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
38.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
38.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
38.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
38.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
37.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
37.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
37.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
37.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
37.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
37.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
37.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
37.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
36.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
36.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
36.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
36.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
36.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
36.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
36.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
35.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
35.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
35.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
35.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
35.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
35.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
35.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
35.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
35.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
35.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
35.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
35.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
35.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
35.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
35.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
35.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
34.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
34.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
34.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
34.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
34.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
34.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
33.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
33.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
33.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
33.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
33.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
33.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
33.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
33.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
33.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
33.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
33.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
32.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
32.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
32.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
32.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
32.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
32.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
32.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
32.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
32.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
32.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
32.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
31.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
31.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
31.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
31.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
30.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
30.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
30.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
30.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
30.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
30.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
30.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
30.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
30.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
29.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
29.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
29.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
29.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
29.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
29.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
29.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
29.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
29.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
29.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
28.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
28.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
28.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
28.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
28.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
28.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
28.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
28.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
28.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
28.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
28.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
28.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
27.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
27.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
27.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
27.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
27.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
27.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
27.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
27.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
26.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
26.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
26.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
26.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
26.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
26.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
25.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
25.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
25.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
24.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
24.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
24.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
24.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
24.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
24.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
24.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
23.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
23.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
23.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
23.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
23.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
22.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
22.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
22.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
22.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
22.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
22.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
22.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
22.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
22.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
21.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
21.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
20.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
19.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
18.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
18.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
18.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
18.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
17.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
15.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NOSIP is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
27.3
Number of samples
231
Samples
Sample
Description
TPM
DO23508
0 years, female, NA, stage:2, alive, 390 days
89.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
83.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
81.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
77.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
64.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
62.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
61.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
60.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
59.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
58.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
56.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
55.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
53.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
52.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
52.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
50.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
50.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
46.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
45.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
45.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
44.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
43.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
42.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
42.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
41.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
41.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
41.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
40.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
40.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
40.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
40.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
39.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
39.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
39.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
39.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
38.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
38.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
38.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
38.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
37.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
37.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
36.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
36.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
36.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
35.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
35.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
34.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
34.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
34.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
34.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
33.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
32.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
32.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
32.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
32.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
32.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
31.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
31.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
31.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
31.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
31.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
31.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
31.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
31.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
31.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
30.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
30.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
30.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
29.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
29.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
29.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
29.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
29.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
29.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
29.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
29.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
28.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
28.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
28.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
28.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
28.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
28.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
27.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
27.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
27.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
27.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
27.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
27.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
27.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
26.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
26.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
26.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
26.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
26.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
26.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
26.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
26.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
26.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
26.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
26.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
26.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
26.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
26.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
25.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
25.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
25.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
25.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
25.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
25.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
24.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
24.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
24.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
24.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
24.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
24.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
24.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
24.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
24.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
23.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
23.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
23.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
23.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
23.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
23.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
22.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
22.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
22.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
22.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
22.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
22.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
22.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
22.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
21.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
21.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
21.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
21.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
21.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
21.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
21.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
21.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
21.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
21.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
21.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
20.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
20.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
20.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
20.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
20.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
20.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
20.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
20.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
20.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
20.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
20.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
20.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
20.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
20.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
20.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
20.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
19.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
19.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
19.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
19.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
19.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
19.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
19.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
19.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
19.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
19.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
19.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
18.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
18.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
18.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
18.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
18.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
18.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
18.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
18.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
18.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
18.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
18.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
18.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
18.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
18.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
18.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
18.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
17.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
17.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
17.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
17.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
17.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
17.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
16.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
16.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
16.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
16.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
16.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
16.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
16.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
16.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
15.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
15.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
15.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
15.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
15.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
15.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
15.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
15.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
15.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
14.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
14.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
14.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
14.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
14.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
14.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
14.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
14.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
13.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
13.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
13.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
13.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
12.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
12.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
12.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
12.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
11.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
11.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
11.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
10.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
10.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
7.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
425
Tumor
1.4
661
Tumor
1.4
285
Tumor
1.1
737
Tumor
1.0
921
Tumor
1.0
635
Tumor
1.0
497
Tumor
0.9
431
Tumor
0.9
515
Tumor
0.9
965
Tumor
0.9
865
Tumor
0.8
473
Tumor
0.8
112
Tumor
0.8
357
Tumor
0.8
523
Tumor
0.8
983
Tumor
0.8
567
Tumor
0.8
1021
Tumor
0.7
1031
Tumor
0.7
937
Tumor
0.7
975
Tumor
0.7
777
Tumor
0.7
647
Tumor
0.7
341
Tumor
0.7
211
Tumor
0.7
525
Tumor
0.7
951
Tumor
0.7
977
Tumor
0.6
123
Tumor
0.6
967
Tumor
0.6
571
Tumor
0.6
881
Tumor
0.6
537
Tumor
0.6
533
Tumor
0.6
527
Tumor
0.6
695
Tumor
0.6
815
Tumor
0.5
545
Tumor
0.5
923
Tumor
0.5
721
Tumor
0.5
455
Tumor
0.5
863
Tumor
0.5
883
Tumor
0.5
393
Tumor
0.5
465
Tumor
0.5
271
Tumor
0.5
331
Tumor
0.5
213
Tumor
0.5
131
Tumor
0.5
161
Tumor
0.4
913
Tumor
0.4
813
Tumor
0.4
483
Tumor
0.4
517
Tumor
0.4
387
Tumor
0.4
447
Tumor
0.4
493
Tumor
0.4
221
Tumor
0.4
351
Tumor
0.4
267
Tumor
0.4
665
Tumor
0.4
217
Tumor
0.3
1025
Tumor
0.3
963
Tumor
0.3
137
Tumor
0.3
955
Tumor
0.3
433
Tumor
0.3
877
Tumor
0.3
443
Tumor
0.3
395
Tumor
0.3
411
Tumor
0.3
113
Tumor
0.3
857
Tumor
0.3
861
Tumor
0.3
353
Tumor
0.3
1013
Tumor
0.3
1041
Tumor
0.3
477
Tumor
0.3
814
Normal
0.3
957
Tumor
0.3
785
Tumor
0.3
697
Tumor
0.3
413
Tumor
0.3
873
Tumor
0.2
724
Normal
0.2
481
Tumor
0.2
867
Tumor
0.2
467
Tumor
0.2
671
Tumor
0.2
641
Tumor
0.2
223
Tumor
0.2
535
Tumor
0.2
421
Tumor
0.2
823
Tumor
0.2
283
Tumor
0.2
297
Tumor
0.2
451
Tumor
0.2
663
Tumor
0.2
277
Tumor
0.2
1045
Tumor
0.2
553
Tumor
0.2
513
Tumor
0.2
471
Tumor
0.2
367
Tumor
0.2
851
Tumor
0.2
218
Normal
0.2
463
Tumor
0.2
222
Normal
0.2
445
Tumor
0.2
817
Tumor
0.2
231
Tumor
0.2
415
Tumor
0.1
383
Tumor
0.1
615
Tumor
0.1
261
Tumor
0.1
563
Tumor
0.1
727
Tumor
0.1
627
Tumor
0.1
915
Tumor
0.1
536
Normal
0.1
461
Tumor
0.1
557
Tumor
0.1
715
Tumor
0.1
616
Normal
0.1
968
Normal
0.1
966
Normal
0.1
185
Tumor
0.1
745
Tumor
0.1
981
Tumor
0.1
363
Tumor
0.1
1027
Tumor
0.0
361
Tumor
0.0
524
Normal
0.0
912
Normal
0.0
884
Normal
0.0
882
Normal
0.0
1014
Normal
0.0
953
Tumor
0.0
617
Tumor
0.0
628
Normal
0.0
141
Tumor
0.0
196
Normal
0.0
135
Tumor
0.0
368
Normal
0.0
755
Tumor
0.0
1046
Normal
0.0
343
Tumor
0.0
195
Tumor
0.0
427
Tumor
0.0
664
Normal
0.0
978
Normal
0.0
484
Normal
0.0
743
Tumor
0.0
1043
Tumor
0.0
958
Normal
0.0
685
Tumor
0.0
713
Tumor
0.0
187
Tumor
0.0
391
Tumor
-0.1
636
Normal
-0.1
924
Normal
-0.1
228
Normal
-0.1
672
Normal
-0.1
662
Normal
-0.1
214
Normal
-0.1
964
Normal
-0.1
528
Normal
-0.1
385
Tumor
-0.1
818
Normal
-0.1
943
Tumor
-0.1
311
Tumor
-0.1
492
Normal
-0.1
666
Normal
-0.1
487
Tumor
-0.1
142
Normal
-0.1
327
Tumor
-0.1
554
Normal
-0.1
474
Normal
-0.1
878
Normal
-0.1
922
Normal
-0.1
448
Normal
-0.1
518
Normal
-0.1
191
Tumor
-0.1
127
Tumor
-0.1
696
Normal
-0.1
478
Normal
-0.1
546
Normal
-0.1
491
Tumor
-0.1
866
Normal
-0.1
564
Normal
-0.1
984
Normal
-0.1
686
Normal
-0.1
435
Tumor
-0.1
716
Normal
-0.1
423
Tumor
-0.1
917
Tumor
-0.1
365
Tumor
-0.1
862
Normal
-0.1
355
Tumor
-0.1
918
Normal
-0.1
498
Normal
-0.1
1028
Normal
-0.1
352
Normal
-0.1
488
Normal
-0.1
171
Tumor
-0.1
146
Normal
-0.1
538
Normal
-0.1
572
Normal
-0.1
472
Normal
-0.1
778
Normal
-0.1
648
Normal
-0.2
375
Tumor
-0.2
618
Normal
-0.2
568
Normal
-0.2
925
Tumor
-0.2
741
Tumor
-0.2
516
Normal
-0.2
286
Normal
-0.2
1022
Normal
-0.2
864
Normal
-0.2
698
Normal
-0.2
742
Normal
-0.2
816
Normal
-0.2
534
Normal
-0.2
366
Normal
-0.2
376
Normal
-0.2
362
Normal
-0.2
914
Normal
-0.2
952
Normal
-0.2
852
Normal
-0.2
1044
Normal
-0.2
384
Normal
-0.2
132
Normal
-0.2
147
Tumor
-0.2
494
Normal
-0.2
526
Normal
-0.2
738
Normal
-0.2
258
Normal
-0.2
1016
Normal
-0.2
746
Normal
-0.2
462
Normal
-0.2
744
Normal
-0.2
436
Normal
-0.2
573
Tumor
-0.2
426
Normal
-0.2
1015
Tumor
-0.2
1026
Normal
-0.2
284
Normal
-0.2
145
Tumor
-0.2
926
Normal
-0.2
858
Normal
-0.2
1042
Normal
-0.2
452
Normal
-0.2
111
Normal
-0.2
714
Normal
-0.2
344
Normal
-0.2
298
Normal
-0.2
466
Normal
-0.2
227
Tumor
-0.2
136
Normal
-0.2
944
Normal
-0.2
464
Normal
-0.2
192
Normal
-0.3
138
Normal
-0.3
786
Normal
-0.3
722
Normal
-0.3
268
Normal
-0.3
956
Normal
-0.3
916
Normal
-0.3
412
Normal
-0.3
422
Normal
-0.3
272
Normal
-0.3
314
Normal
-0.3
456
Normal
-0.3
824
Normal
-0.3
354
Normal
-0.3
954
Normal
-0.3
446
Normal
-0.3
982
Normal
-0.3
124
Normal
-0.3
468
Normal
-0.3
1032
Normal
-0.3
514
Normal
-0.3
938
Normal
-0.3
396
Normal
-0.3
232
Normal
-0.3
428
Normal
-0.3
558
Normal
-0.3
262
Normal
-0.3
728
Normal
-0.3
642
Normal
-0.3
188
Normal
-0.3
364
Normal
-0.3
114
Normal
-0.3
868
Normal
-0.3
874
Normal
-0.3
482
Normal
-0.3
424
Normal
-0.3
128
Normal
-0.4
434
Normal
-0.4
212
Normal
-0.4
416
Normal
-0.4
574
Normal
-0.4
432
Normal
-0.4
976
Normal
-0.4
186
Normal
-0.4
126
Normal
-0.4
723
Tumor
-0.4
414
Normal
-0.4
148
Normal
-0.4
224
Normal
-0.4
444
Normal
-0.4
911
Tumor
-0.4
257
Tumor
-0.4
278
Normal
-0.4
756
Normal
-0.4
125
Tumor
-0.4
312
Normal
-0.5
358
Normal
-0.5
313
Tumor
-0.5
162
Normal
-0.5
342
Normal
-0.5
332
Normal
-0.5
328
Normal
-0.5
172
Normal
-0.5
386
Normal
-0.6
356
Normal
-0.6
394
Normal
-0.6
388
Normal
-0.6
392
Normal
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
